-
1
-
-
25444482801
-
Speeding disease gene discovery by sequence based candidate prioritization
-
Adie EA, Adams RR, Evans KL, Porteous DJ, Pickard BS (2005) Speeding disease gene discovery by sequence based candidate prioritization. BMC Bioinformatics 6:55
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 55
-
-
Adie, E.A.1
Adams, R.R.2
Evans, K.L.3
Porteous, D.J.4
Pickard, B.S.5
-
2
-
-
33645104470
-
SUSPECTS: Enabling fast and effective prioritization of positional candidates
-
Adie EA, Adams RR, Evans KL, Porteous DJ, Pickard BS (2006) SUSPECTS: Enabling fast and effective prioritization of positional candidates. Bioinformatics 22(6):773-774
-
(2006)
Bioinformatics
, vol.22
, Issue.6
, pp. 773-774
-
-
Adie, E.A.1
Adams, R.R.2
Evans, K.L.3
Porteous, D.J.4
Pickard, B.S.5
-
3
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
Aerts S, Lambrechts D, Maity S, Van Loo P, Coessens B, De Smet F, Tranchevent LC, De Moor B, Marynen P, Hassan B, Carmeliet P, Moreau Y (2006) Gene prioritization through genomic data fusion. Nat Biotechnol 24(5):537-544
-
(2006)
Nat Biotechnol
, vol.24
, Issue.5
, pp. 537-544
-
-
Aerts, S.1
Lambrechts, D.2
Maity, S.3
Van Loo, P.4
Coessens, B.5
De Smet, F.6
Tranchevent, L.C.7
De Moor, B.8
Marynen, P.9
Hassan, B.10
Carmeliet, P.11
Moreau, Y.12
-
4
-
-
2442604715
-
The genetic association database
-
doi:10.1038/ng0504-431, ng0504-431 [pii]
-
Becker KG, Barnes KC, Bright TJ, Wang SA (2004) The genetic association database. Nat Genet 36(5):431-432. doi:10.1038/ng0504-431, ng0504-431 [pii]
-
(2004)
Nat Genet
, vol.36
, Issue.5
, pp. 431-432
-
-
Becker, K.G.1
Barnes, K.C.2
Bright, T.J.3
Wang, S.A.4
-
5
-
-
80455149806
-
Exome-sequencing confirms DNAJC5 mutations as cause of adult neuronal ceroid-lipofuscinosis
-
doi:10.1371/journal. pone.0026741, PONE-D-11-16499 [pii]
-
Benitez BA, Alvarado D, Cai Y, Mayo K, Chakraverty S, Norton J, Morris JC, Sands MS, Goate A, Cruchaga C (2011) Exome-sequencing confirms DNAJC5 mutations as cause of adult neuronal ceroid-lipofuscinosis. PLoS One 6(11):e26741. doi:10.1371/journal. pone.0026741, PONE-D-11-16499 [pii]
-
(2011)
PLoS One
, vol.6
, Issue.11
-
-
Benitez, B.A.1
Alvarado, D.2
Cai, Y.3
Mayo, K.4
Chakraverty, S.5
Norton, J.6
Morris, J.C.7
Sands, M.S.8
Goate, A.9
Cruchaga, C.10
-
6
-
-
77957704576
-
Retinol status of newborn infants is associated with congenital diaphragmatic hernia
-
doi:10.1542/peds.2010-0521 eds2010-0521 [ii]
-
Beurskens LW, Tibboel D, Lindemans J, Duvekot JJ, Cohen-Overbeek TE, Veenma DC, de Klein A, Greer JJ, Steegers-Theunissen RP (2010) Retinol status of newborn infants is associated with congenital diaphragmatic hernia. Pediatrics 126(4):712-720. doi:10.1542/peds.2010- 0521, peds.2010-0521 [pii]
-
(2010)
Pediatrics
, vol.126
, Issue.4
, pp. 712-720
-
-
Beurskens, L.W.1
Tibboel, D.2
Lindemans, J.3
Duvekot, J.J.4
Cohen-Overbeek, T.E.5
Veenma, D.C.6
De Klein, A.7
Greer, J.J.8
Steegers-Theunissen, R.P.9
-
7
-
-
84870474023
-
An unbiased evaluation of gene prioritization tools
-
doi:10.1093/bioinformatics/bts581, bts581 [pii]
-
Bornigen D, Tranchevent LC, Bonachela-Capdevila F, Devriendt K, De Moor B, De Causmaecker P, Moreau Y (2012) An unbiased evaluation of gene prioritization tools. Bioinformatics 28(23):3081-3088. doi:10.1093/ bioinformatics/bts581, bts581 [pii]
-
(2012)
Bioinformatics
, vol.28
, Issue.23
, pp. 3081-3088
-
-
Bornigen, D.1
Tranchevent, L.C.2
Bonachela-Capdevila, F.3
Devriendt, K.4
De Moor, B.5
De Causmaecker, P.6
Moreau, Y.7
-
8
-
-
62849126285
-
Disease candidate gene identification and prioritization using protein interaction networks
-
doi1471-2105-10-73 [pii] 101186/1471-2105-10-73
-
Chen J, Aronow BJ, Jegga AG (2009) Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinformatics 10:73. doi:1471-2105-10-73, [pii] 10.1186/1471-2105-10-73
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 73
-
-
Chen, J.1
Aronow, B.J.2
Jegga, A.G.3
-
9
-
-
67849130563
-
ToppGene Suite for gene list enrichment analysis and candidate gene prioritization
-
(Web Server issue) doi:gkp427, [pii] 10.1093/nar/gkp427
-
Chen J, Bardes EE, Aronow BJ, Jegga AG (2009) ToppGene Suite for gene list enrichment analysis and candidate gene prioritization. Nucleic Acids Res 37(Web Server issue):W305- W311. doi:gkp427, [pii] 10.1093/nar/gkp427
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Chen, J.1
Bardes, E.E.2
Aronow, B.J.3
Jegga, A.G.4
-
10
-
-
38049136610
-
Improved human disease candidate gene prioritization using mouse phenotype
-
Chen J, Xu H, Aronow BJ, Jegga AG (2007) Improved human disease candidate gene prioritization using mouse phenotype. BMC Bioinformatics 8(1):392
-
(2007)
BMC Bioinformatics
, vol.8
, Issue.1
, pp. 392
-
-
Chen, J.1
Xu, H.2
Aronow, B.J.3
Jegga, A.G.4
-
11
-
-
39049189899
-
Mining Alzheimer disease relevant proteins from integrated protein interactome data
-
Chen JY, Shen C, Sivachenko AY (2006) Mining Alzheimer disease relevant proteins from integrated protein interactome data. Pac Symp Biocomput 367-378
-
(2006)
Pac Symp Biocomput
, pp. 367-378
-
-
Chen, J.Y.1
Shen, C.2
Sivachenko, A.Y.3
-
12
-
-
77956047866
-
A novel candidate disease genes prioritization method based on module partition and rank fusion
-
doi:10.1089/omi.2009.0143
-
Chen X, Yan GY, Liao XP (2010) A novel candidate disease genes prioritization method based on module partition and rank fusion. OMICS 14(4):337-356. doi:10.1089/omi.2009.0143
-
(2010)
OMICS
, vol.14
, Issue.4
, pp. 337-356
-
-
Chen, X.1
Yan, G.Y.2
Liao, X.P.3
-
13
-
-
58149200928
-
Comparative Toxicogenomics Database: A knowledgebase and discovery tool for chemical-gene-disease networks
-
(Database issue) doi:gkn580, [pii] 10.1093/nar/gkn580
-
Davis AP, Murphy CG, Saraceni-Richards CA, Rosenstein MC, Wiegers TC, Mattingly CJ (2009) Comparative Toxicogenomics Database: A knowledgebase and discovery tool for chemical-gene-disease networks. Nucleic Acids Res 37(Database issue):D786-D792. doi:gkn580, [pii] 10.1093/nar/gkn580
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Davis, A.P.1
Murphy, C.G.2
Saraceni-Richards, C.A.3
Rosenstein, M.C.4
Wiegers, T.C.5
Mattingly, C.J.6
-
14
-
-
79955556527
-
Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis
-
doi:gr.117143.110, [pii] 10.1101/gr.117143.110
-
Erlich Y, Edvardson S, Hodges E, Zenvirt S, Thekkat P, Shaag A, Dor T, Hannon GJ, Elpeleg O (2011) Exome sequencing and disease-network analysis of a single family implicate a mutation in KIF1A in hereditary spastic paraparesis. Genome Res 21(5):658-664. doi:gr.117143.110, [pii] 10.1101/gr.117143.110
-
(2011)
Genome Res
, vol.21
, Issue.5
, pp. 658-664
-
-
Erlich, Y.1
Edvardson, S.2
Hodges, E.3
Zenvirt, S.4
Thekkat, P.5
Shaag, A.6
Dor, T.7
Hannon, G.J.8
Elpeleg, O.9
-
15
-
-
33646884801
-
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
-
Franke L, Bakel H, Fokkens L, de Jong ED, Egmont-Petersen M, Wijmenga C (2006) Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. Am J Hum Genet 78(6):1011-1025
-
(2006)
Am J Hum Genet
, vol.78
, Issue.6
, pp. 1011-1025
-
-
Franke, L.1
Bakel, H.2
Fokkens, L.3
De Jong, E.D.4
Egmont-Petersen, M.5
Wijmenga, C.6
-
16
-
-
0037580196
-
A similarity-based method for genome-wide prediction of disease-relevant human genes
-
Freudenberg J, Propping P (2002) A similarity-based method for genome-wide prediction of disease-relevant human genes. Bioinformatics 18(Suppl 2):S110-S115
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 2
-
-
Freudenberg, J.1
Propping, P.2
-
17
-
-
33750983361
-
Analysis of protein sequence and interaction data for candidate disease gene prediction
-
George RA, Liu JY, Feng LL, Bryson-Richardson RJ, Fatkin D, Wouters MA (2006) Analysis of protein sequence and interaction data for candidate disease gene prediction. Nucleic Acids Res 34(19):e130
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.19
-
-
George, R.A.1
Liu, J.Y.2
Feng, L.L.3
Bryson-Richardson, R.J.4
Fatkin, D.5
Wouters, M.A.6
-
18
-
-
0345600247
-
A protein interaction map of Drosophila melanogaster
-
(New York, NY) doi:10.1126/science.1090289 1090289-[ii]
-
Giot L, Bader JS, Brouwer C, Chaudhuri A, Kuang B, Li Y, Hao YL, Ooi CE, Godwin B, Vitols E, Vijayadamodar G, Pochart P, Machineni H, Welsh M, Kong Y, Zerhusen B, Malcolm R, Varrone Z, Collis A, Minto M, Burgess S, McDaniel L, Stimpson E, Spriggs F, Williams J, Neurath K, Ioime N, Agee M, Voss E, Furtak K, Renzulli R, Aanensen N, Carrolla S, Bickelhaupt E, Lazovatsky Y, DaSilva A, Zhong J, Stanyon CA, Finley RL Jr, White KP, Braverman M, Jarvie T, Gold S, Leach M, Knight J, Shimkets RA, McKenna MP, Chant J, Rothberg JM (2003) A protein interaction map of Drosophila melanogaster. Science (New York, NY) 302(5651):1727-1736. doi:10.1126/science.1090289, 1090289 [pii]
-
(2003)
Science
, vol.302
, Issue.5651
, pp. 1727-1736
-
-
Giot, L.1
Bader, J.S.2
Brouwer, C.3
Chaudhuri, A.4
Kuang, B.5
Li, Y.6
Hao, Y.L.7
Ooi, C.E.8
Godwin, B.9
Vitols, E.10
Vijayadamodar, G.11
Pochart, P.12
Machineni, H.13
Welsh, M.14
Kong, Y.15
Zerhusen, B.16
Malcolm, R.17
Varrone, Z.18
Collis, A.19
Minto, M.20
Burgess, S.21
McDaniel, L.22
Stimpson, E.23
Spriggs, F.24
Williams, J.25
Neurath, K.26
Ioime, N.27
Agee, M.28
Voss, E.29
Furtak, K.30
Renzulli, R.31
Aanensen, N.32
Carrolla, S.33
Bickelhaupt, E.34
Lazovatsky, Y.35
Dasilva, A.36
Zhong, J.37
Stanyon, C.A.38
Finley Jr., R.L.39
White, K.P.40
Braverman, M.41
Jarvie, T.42
Gold, S.43
Leach, M.44
Knight, J.45
Shimkets, R.A.46
McKenna, M.P.47
Chant, J.48
Rothberg, J.M.49
more..
-
19
-
-
4644231870
-
A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease
-
doi:10.1016/j.molcel.2004.09.016 S1097276504005453-[ii]
-
Goehler H, Lalowski M, Stelzl U, Waelter S, Stroedicke M, Worm U, Droege A, Lindenberg KS, Knoblich M, Haenig C, Herbst M, Suopanki J, Scherzinger E, Abraham C, Bauer B, Hasenbank R, Fritzsche A, Ludewig AH, Bussow K, Coleman SH, Gutekunst CA, Landwehrmeyer BG, Lehrach H, Wanker EE (2004) A protein interaction network links GIT1, an enhancer of huntingtin aggregation, to Huntington's disease. Mol Cell 15(6):853-865. doi:10.1016/j.molcel.2004.09.016, S1097276504005453 [pii]
-
(2004)
Mol Cell
, vol.15
, Issue.6
, pp. 853-865
-
-
Goehler, H.1
Lalowski, M.2
Stelzl, U.3
Waelter, S.4
Stroedicke, M.5
Worm, U.6
Droege, A.7
Lindenberg, K.S.8
Knoblich, M.9
Haenig, C.10
Herbst, M.11
Suopanki, J.12
Scherzinger, E.13
Abraham, C.14
Bauer, B.15
Hasenbank, R.16
Fritzsche, A.17
Ludewig, A.H.18
Bussow, K.19
Coleman, S.H.20
Gutekunst, C.A.21
Landwehrmeyer, B.G.22
Lehrach, H.23
Wanker, E.E.24
more..
-
20
-
-
34547140875
-
The human disease network
-
doi0701361104 [ii] 101073/ nas0701361104
-
Goh KI, Cusick ME, Valle D, Childs B, Vidal M, Barabasi AL (2007) The human disease network. Proc Natl Acad Sci U S A 104(21):8685-8690. doi:0701361104, [pii] 10.1073/ pnas.0701361104
-
(2007)
Proc Natl Acad Sci U S A
, vol.104
, Issue.21
, pp. 8685-8690
-
-
Goh, K.I.1
Cusick, M.E.2
Valle, D.3
Childs, B.4
Vidal, M.5
Barabasi, A.L.6
-
21
-
-
13444266370
-
Online Mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders
-
Hamosh A, Scott A, Amberger J, Bocchini C, McKusick V (2005) Online Mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res 33:D514-D517
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Hamosh, A.1
Scott, A.2
Amberger, J.3
Bocchini, C.4
McKusick, V.5
-
22
-
-
67249117049
-
Potential etiologic and functional implications of genome-wide association loci for human diseases and traits
-
doi0903103106 [ii]101073/nas0903103106
-
Hindorff LA, Sethupathy P, Junkins HA, Ramos EM, Mehta JP, Collins FS, Manolio TA (2009) Potential etiologic and functional implications of genome-wide association loci for human diseases and traits. Proc Natl Acad Sci U S A 106(23):9362-9367. doi:0903103106, [pii]10.1073/pnas.0903103106
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, Issue.23
, pp. 9362-9367
-
-
Hindorff, L.A.1
Sethupathy, P.2
Junkins, H.A.3
Ramos, E.M.4
Mehta, J.P.5
Collins, F.S.6
Manolio, T.A.7
-
23
-
-
13444278595
-
Using literature-based discovery to identify disease candidate genes
-
Hristovski D, Peterlin B, Mitchell JA, Humphrey SM (2005) Using literature-based discovery to identify disease candidate genes. Int J Med Inform 74(2-4):289-298
-
(2005)
Int J Med Inform
, vol.74
, Issue.2-4
, pp. 289-298
-
-
Hristovski, D.1
Peterlin, B.2
Mitchell, J.A.3
Humphrey, S.M.4
-
24
-
-
84862249788
-
Prioritizing disease candidate genes by a gene interconnectedness-based approach
-
Hsu C, Huang Y, Hsu C, Yang U (2011) Prioritizing disease candidate genes by a gene interconnectedness-based approach. BMC Genomics 12(3):S25
-
(2011)
BMC Genomics
, vol.12
, Issue.3
-
-
Hsu, C.1
Huang, Y.2
Hsu, C.3
Yang, U.4
-
25
-
-
3242677236
-
Comparative genomics for reliable protein-function prediction from genomic data
-
Huynen MA, Snel B, van Noort V (2004) Comparative genomics for reliable protein-function prediction from genomic data. Trends Genet 20(8):340-344
-
(2004)
Trends Genet
, vol.20
, Issue.8
, pp. 340-344
-
-
Huynen, M.A.1
Snel, B.2
Van Noort, V.3
-
26
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
doi:10.1073/pnas.061034498 061034498-[ii]
-
Ito T, Chiba T, Ozawa R, Yoshida M, Hattori M, Sakaki Y (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc Natl Acad Sci U S A 98(8):4569-4574. doi:10.1073/pnas.061034498, 061034498 [pii]
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, Issue.8
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
29
-
-
79955659162
-
Integrative systems biology approaches to identify and prioritize disease and drug candidate genes
-
doi:10.1007/978-1-61737-954-3-16
-
Kaimal V, Sardana D, Bardes EE, Gudivada RC, Chen J, Jegga AG (2011) Integrative systems biology approaches to identify and prioritize disease and drug candidate genes. Methods Mol Biol 700:241-259. doi:10.1007/978-1-61737-954- 3-16
-
(2011)
Methods Mol Biol
, vol.700
, pp. 241-259
-
-
Kaimal, V.1
Sardana, D.2
Bardes, E.E.3
Gudivada, R.C.4
Chen, J.5
Jegga, A.G.6
-
30
-
-
36349010138
-
Protein interactions and disease: Computational approaches to uncover the etiology of diseases
-
Kann MG (2007) Protein interactions and disease: Computational approaches to uncover the etiology of diseases. Brief Bioinform 8(5):333-346
-
(2007)
Brief Bioinform
, vol.8
, Issue.5
, pp. 333-346
-
-
Kann, M.G.1
-
31
-
-
41949141881
-
Retinyl ester formation by lecithin: Retinol acyltransferase is a key regulator of retinoid homeostasis in mouse embryogenesis
-
doiM708885200 [ii] 101074/jbcM708885200
-
Kim YK, Wassef L, Hamberger L, Piantedosi R, Palczewski K, Blaner WS, Quadro L (2008) Retinyl ester formation by lecithin: Retinol acyltransferase is a key regulator of retinoid homeostasis in mouse embryogenesis. J Biol Chem 283(9):5611-5621. doi:M708885200, [pii] 10.1074/jbc.M708885200
-
(2008)
J Biol Chem
, vol.283
, Issue.9
, pp. 5611-5621
-
-
Kim, Y.K.1
Wassef, L.2
Hamberger, L.3
Piantedosi, R.4
Palczewski, K.5
Blaner, W.S.6
Quadro, L.7
-
32
-
-
0016669094
-
Evolution at two levels in humans and chimpanzees
-
King MC, Wilson AC (1975) Evolution at two levels in humans and chimpanzees. Science (New York, NY) 188(4184):107-116
-
(1975)
Science (New York, NY)
, vol.188
, Issue.4184
, pp. 107-116
-
-
King, M.C.1
Wilson, A.C.2
-
33
-
-
4243148480
-
Authoritative sources in a hyperlinked environment
-
Kleinberg J (1999) Authoritative sources in a hyperlinked environment. J ACM 46(5):604-632
-
(1999)
J. ACM
, vol.46
, Issue.5
, pp. 604-632
-
-
Kleinberg, J.1
-
34
-
-
41549139527
-
Walking the interactome for prioritization of candidate disease genes
-
doiS0002-92970800172-9 [pii] 101016/jajhg2008 02013
-
Kohler S, Bauer S, Horn D, Robinson PN (2008) Walking the interactome for prioritization of candidate disease genes. Am J Hum Genet 82(4):949-958. doi:S0002-9297(08)00172-9, [pii] 10.1016/j.ajhg.2008.02.013
-
(2008)
Am J Hum Genet
, vol.82
, Issue.4
, pp. 949-958
-
-
Kohler, S.1
Bauer, S.2
Horn, D.3
Robinson, P.N.4
-
35
-
-
0036648981
-
From QTL to gene: The harvest begins
-
Korstanje R, Paigen B (2002) From QTL to gene: The harvest begins. Nat Genet 31(3):235-236
-
(2002)
Nat Genet
, vol.31
, Issue.3
, pp. 235-236
-
-
Korstanje, R.1
Paigen, B.2
-
36
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
Lage K, Karlberg EO, Storling ZM, Olason PI, Pedersen AG, Rigina O, Hinsby AM, Tumer Z, Pociot F, Tommerup N et al (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat Biotechnol 25(3):309-316
-
(2007)
Nat Biotechnol
, vol.25
, Issue.3
, pp. 309-316
-
-
Lage, K.1
Karlberg, E.O.2
Storling, Z.M.3
Olason, P.I.4
Pedersen, A.G.5
Rigina, O.6
Hinsby, A.M.7
Tumer, Z.8
Pociot, F.9
Tommerup, N.10
-
37
-
-
9144264169
-
A map of the interactome network of the metazoan C. Elegans
-
doi:10.1126/science.1091403 1091403-[ii]
-
Li S, Armstrong CM, Bertin N, Ge H, Milstein S, Boxem M, Vidalain PO, Han JD, Chesneau A, Hao T, Goldberg DS, Li N, Martinez M, Rual JF, Lamesch P, Xu L, Tewari M, Wong SL, Zhang LV, Berriz GF, Jacotot L, Vaglio P, Reboul J, Hirozane-Kishikawa T, Li Q, Gabel HW, Elewa A, Baumgartner B, Rose DJ, Yu H, Bosak S, Sequerra R, Fraser A, Mango SE, Saxton WM, Strome S, Van Den Heuvel S, Piano F, Vandenhaute J, Sardet C, Gerstein M, Doucette-Stamm L, Gunsalus KC, Harper JW, Cusick ME, Roth FP, Hill DE, Vidal M (2004) A map of the interactome network of the metazoan C. elegans. Science (New York, NY) 303(5657):540- 543. doi:10.1126/science.1091403, 1091403 [pii]
-
(2004)
Science (New York, NY)
, vol.303
, Issue.5657
, pp. 540-543
-
-
Li, S.1
Armstrong, C.M.2
Bertin, N.3
Ge, H.4
Milstein, S.5
Boxem, M.6
Vidalain, P.O.7
Han, J.D.8
Chesneau, A.9
Hao, T.10
Goldberg, D.S.11
Li, N.12
Martinez, M.13
Rual, J.F.14
Lamesch, P.15
Xu, L.16
Tewari, M.17
Wong, S.L.18
Zhang, L.V.19
Berriz, G.F.20
Jacotot, L.21
Vaglio, P.22
Reboul, J.23
Hirozane-Kishikawa, T.24
Li, Q.25
Gabel, H.W.26
Elewa, A.27
Baumgartner, B.28
Rose, D.J.29
Yu, H.30
Bosak, S.31
Sequerra, R.32
Fraser, A.33
Mango, S.E.34
Saxton, W.M.35
Strome, S.36
Van Den Heuvel, S.37
Piano, F.38
Vandenhaute, J.39
Sardet, C.40
Gerstein, M.41
Doucette-Stamm, L.42
Gunsalus, K.C.43
Harper, J.W.44
Cusick, M.E.45
Roth, F.P.46
Hill, D.E.47
Vidal, M.48
more..
-
38
-
-
76249105279
-
Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network
-
doi:10.1186/gb-2009-10-9-r91, gb-2009-10-9-r91 [pii]
-
Linghu B, Snitkin ES, Hu Z, Xia Y, Delisi C (2009) Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network. Genome Biol 10(9):R91. doi:10.1186/gb-2009-10-9-r91, gb-2009-10-9-r91 [pii]
-
(2009)
Genome Biol
, vol.10
, Issue.9
-
-
Linghu, B.1
Snitkin, E.S.2
Hu, Z.3
Xia, Y.4
Delisi, C.5
-
39
-
-
3543106033
-
Genome-wide identification of genes likely to be involved in human genetic disease
-
Lopez-Bigas N, Ouzounis CA (2004) Genome-wide identification of genes likely to be involved in human genetic disease. Nucleic Acids Res 32(10):3108-3114
-
(2004)
Nucleic Acids Res
, vol.32
, Issue.10
, pp. 3108-3114
-
-
Lopez-Bigas, N.1
Ouzounis, C.A.2
-
40
-
-
0035230102
-
Quantitative trait loci in Drosophila
-
Mackay TF (2001) Quantitative trait loci in Drosophila. Nat Rev 2(1):11-20
-
(2001)
Nat Rev
, vol.2
, Issue.1
, pp. 11-20
-
-
Mackay, T.F.1
-
41
-
-
23144458671
-
GFINDer: Genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists
-
(Web Server issue)
-
Masseroli M, Galati O, Pinciroli F (2005) GFINDer: Genetic disease and phenotype location statistical analysis and mining of dynamically annotated gene lists. Nucleic Acids Res 33(Web Server issue):W717-W723
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Masseroli, M.1
Galati, O.2
Pinciroli, F.3
-
42
-
-
3242880832
-
GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining
-
(Web Server issue)
-
Masseroli M, Martucci D, Pinciroli F (2004) GFINDer: Genome Function INtegrated Discoverer through dynamic annotation, statistical analysis, and mining. Nucleic Acids Res 32(Web Server issue):W293-W300
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Masseroli, M.1
Martucci, D.2
Pinciroli, F.3
-
43
-
-
84863987708
-
Computational tools for prioritizing candidate genes: Boosting disease gene discovery
-
doi:10.1038/nrg3253, nrg3253 [pii]
-
Moreau Y, Tranchevent LC (2012) Computational tools for prioritizing candidate genes: Boosting disease gene discovery. Nat Rev 13(8):523-536. doi:10.1038/nrg3253, nrg3253 [pii]
-
(2012)
Nat Rev
, vol.13
, Issue.8
, pp. 523-536
-
-
Moreau, Y.1
Tranchevent, L.C.2
-
44
-
-
77951952127
-
The power of protein interaction networks for associating genes with diseases
-
doi:10.1093/bioinformatics/btq076, btq076 [pii]
-
Navlakha S, Kingsford C (2010) The power of protein interaction networks for associating genes with diseases. Bioinformatics 26(8):1057-1063. doi:10.1093/bioinformatics/btq076, btq076 [pii]
-
(2010)
Bioinformatics
, vol.26
, Issue.8
, pp. 1057-1063
-
-
Navlakha, S.1
Kingsford, C.2
-
45
-
-
59649111554
-
Identification of candidate disease genes by integrating gene ontologies and protein-interaction networks: Case study of primary immunodeficiencies
-
doigkn982 [ii]101093/nar/gkn982
-
Ortutay C, Vihinen M (2009) Identification of candidate disease genes by integrating gene ontologies and protein-interaction networks: Case study of primary immunodeficiencies. Nucleic Acids Res 37(2):622-628. doi:gkn982, [pii]10.1093/nar/gkn982
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.2
, pp. 622-628
-
-
Ortutay, C.1
Vihinen, M.2
-
46
-
-
79960904149
-
Web tools for the prioritization of candidate disease genes
-
doi:10.1007/978-1-61779-176-5-12
-
Oti M, Ballouz S, Wouters MA (2011) Web tools for the prioritization of candidate disease genes. Methods Mol Biol 760:189-206. doi:10.1007/978-1-61779- 176-5-12
-
(2011)
Methods Mol Biol
, vol.760
, pp. 189-206
-
-
Oti, M.1
Ballouz, S.2
Wouters, M.A.3
-
47
-
-
33747035889
-
Predicting disease genes using protein-protein interactions
-
Oti M, Snel B, Huynen MA, Brunner HG (2006) Predicting disease genes using protein-protein interactions. J Med Genet 43(8):691-698
-
(2006)
J Med Genet
, vol.43
, Issue.8
, pp. 691-698
-
-
Oti, M.1
Snel, B.2
Huynen, M.A.3
Brunner, H.G.4
-
48
-
-
0036649742
-
Association of genes to genetically inherited diseases using data mining
-
Perez-Iratxeta C, Bork P, Andrade MA (2002) Association of genes to genetically inherited diseases using data mining. Nat Genet 31(3):316-319
-
(2002)
Nat Genet
, vol.31
, Issue.3
, pp. 316-319
-
-
Perez-Iratxeta, C.1
Bork, P.2
Andrade, M.A.3
-
50
-
-
84857658973
-
Computational approaches to disease-gene prediction: Rationale, classification and successes
-
doi:10.1111/j.1742-4658.2012.08471.x
-
Piro RM, Di Cunto F (2012) Computational approaches to disease-gene prediction: Rationale, classification and successes. FEBS J 279(5):678-696. doi:10.1111/j.1742-4658.2012.08471.x
-
(2012)
FEBS J
, vol.279
, Issue.5
, pp. 678-696
-
-
Piro, R.M.1
Di Cunto, F.2
-
52
-
-
33747814487
-
TOM: A web-based integrated approach for identification of candidate disease genes
-
(Web Server issue)
-
Rossi S, Masotti D, Nardini C, Bonora E, Romeo G, Macii E, Benini L, Volinia S (2006) TOM: A web-based integrated approach for identification of candidate disease genes. Nucleic Acids Res 34(Web Server issue):W285-W292
-
(2006)
Nucleic Acids Res
, vol.34
-
-
Rossi, S.1
Masotti, D.2
Nardini, C.3
Bonora, E.4
Romeo, G.5
Macii, E.6
Benini, L.7
Volinia, S.8
-
53
-
-
27144530248
-
Towards a proteome-scale map of the human protein-protein interaction network
-
doinature04209 101038/nature04209
-
Rual JF, Venkatesan K, Hao T, Hirozane-Kishikawa T, Dricot A, Li N, Berriz GF, Gibbons FD, Dreze M, Ayivi-Guedehoussou N, Klitgord N, Simon C, Boxem M, Milstein S, Rosenberg J, Goldberg DS, Zhang LV, Wong SL, Franklin G, Li S, Albala JS, Lim J, Fraughton C, Llamosas E, Cevik S, Bex C, Lamesch P, Sikorski RS, Vandenhaute J, Zoghbi HY, Smolyar A, Bosak S, Sequerra R, Doucette-Stamm L, Cusick ME, Hill DE, Roth FP, Vidal M (2005) Towards a proteome-scale map of the human protein-protein interaction network. Nature 437(7062):1173- 1178. doi:nature04209, 10.1038/nature04209
-
(2005)
Nature
, vol.437
, Issue.7062
, pp. 1173-1178
-
-
Rual, J.F.1
Venkatesan, K.2
Hao, T.3
Hirozane-Kishikawa, T.4
Dricot, A.5
Li, N.6
Berriz, G.F.7
Gibbons, F.D.8
Dreze, M.9
Ayivi-Guedehoussou, N.10
Klitgord, N.11
Simon, C.12
Boxem, M.13
Milstein, S.14
Rosenberg, J.15
Goldberg, D.S.16
Zhang, L.V.17
Wong, S.L.18
Franklin, G.19
Li, S.20
Albala, J.S.21
Lim, J.22
Fraughton, C.23
Llamosas, E.24
Cevik, S.25
Bex, C.26
Lamesch, P.27
Sikorski, R.S.28
Vandenhaute, J.29
Zoghbi, H.Y.30
Smolyar, A.31
Bosak, S.32
Sequerra, R.33
Doucette-Stamm, L.34
Cusick, M.E.35
Hill, D.E.36
Roth, F.P.37
Vidal, M.38
more..
-
54
-
-
36348967978
-
Discovery of protein interaction networks shared by diseases
-
Sam L, Liu Y, Li J, Friedman C, Lussier YA (2007) Discovery of protein interaction networks shared by diseases. Pac Symp Biocomput 76-87
-
(2007)
Pac Symp Biocomput
, pp. 76-87
-
-
Sam, L.1
Liu, Y.2
Li, J.3
Friedman, C.4
Lussier, Y.A.5
-
55
-
-
0242285634
-
Human disease genes: Patterns and predictions
-
Smith NG, Eyre-Walker A (2003) Human disease genes: Patterns and predictions. Gene 318:169-175
-
(2003)
Gene
, vol.318
, pp. 169-175
-
-
Smith, N.G.1
Eyre-Walker, A.2
-
56
-
-
25144498379
-
A human protein-protein interaction network: A resource for annotating the proteome
-
doiS0092-86740500866-4 101016/jcell2005 08029
-
Stelzl U, Worm U, Lalowski M, Haenig C, Brembeck FH, Goehler H, Stroedicke M, Zenkner M, Schoenherr A, Koeppen S, Timm J, Mintzlaff S, Abraham C, Bock N, Kietzmann S, Goedde A, Toksoz E, Droege A, Krobitsch S, Korn B, Birchmeier W, Lehrach H, Wanker EE (2005) A human protein-protein interaction network: A resource for annotating the proteome. Cell 122(6):957-968. doi:S0092-8674(05)00866-4, 10.1016/j.cell.2005.08.029
-
(2005)
Cell
, vol.122
, Issue.6
, pp. 957-968
-
-
Stelzl, U.1
Worm, U.2
Lalowski, M.3
Haenig, C.4
Brembeck, F.H.5
Goehler, H.6
Stroedicke, M.7
Zenkner, M.8
Schoenherr, A.9
Koeppen, S.10
Timm, J.11
Mintzlaff, S.12
Abraham, C.13
Bock, N.14
Kietzmann, S.15
Goedde, A.16
Toksoz, E.17
Droege, A.18
Krobitsch, S.19
Korn, B.20
Birchmeier, W.21
Lehrach, H.22
Wanker, E.E.23
more..
-
57
-
-
79952457046
-
Prediction of human disease-related gene clusters by clustering analysis
-
Sun PG, Gao L, Han S (2010) Prediction of human disease-related gene clusters by clustering analysis. Int J Biol Sci 7(1):61-73
-
(2010)
Int J Biol Sci
, vol.7
, Issue.1
, pp. 61-73
-
-
Sun, P.G.1
Gao, L.2
Han, S.3
-
58
-
-
78651324347
-
The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
-
(Database issue) doi:10.1093/nar/gkq973, gkq973 [pii]
-
Szklarczyk D, Franceschini A, Kuhn M, Simonovic M, Roth A, Minguez P, Doerks T, Stark M, Muller J, Bork P, Jensen LJ, von Mering C (2011) The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res 39(Database issue):D561-D568. doi:10.1093/nar/gkq973, gkq973 [pii]
-
(2011)
Nucleic Acids Res
, vol.39
-
-
Szklarczyk, D.1
Franceschini, A.2
Kuhn, M.3
Simonovic, M.4
Roth, A.5
Minguez, P.6
Doerks, T.7
Stark, M.8
Muller, J.9
Bork, P.10
Jensen, L.J.11
Von Mering, C.12
-
59
-
-
37349005962
-
Prioritization of positional candidate genes using multiple web-based software tools
-
Thornblad TA, Elliott KS, Jowett J, Visscher PM (2007) Prioritization of positional candidate genes using multiple web-based software tools. Twin Res Hum Genet 10(6):861-870
-
(2007)
Twin Res Hum Genet
, vol.10
, Issue.6
, pp. 861-870
-
-
Thornblad, T.A.1
Elliott, K.S.2
Jowett, J.3
Visscher, P.M.4
-
60
-
-
79960921606
-
Conceptual thinking for in silico prioritization of candidate disease genes
-
doi:10.1007/978-1-61779-176-5-11
-
Tiffin N (2011) Conceptual thinking for in silico prioritization of candidate disease genes. Methods Mol Biol 760:175-187. doi:10.1007/978-1-61779- 176-5-11
-
(2011)
Methods Mol Biol
, vol.760
, pp. 175-187
-
-
Tiffin, N.1
-
61
-
-
33745154860
-
Computational disease gene identification: A concert of methods prioritizes type 2 diabetes and obesity candidate genes
-
Tiffin N, Adie E, Turner F, Brunner HG, van Driel MA, Oti M, Lopez-Bigas N, Ouzounis C, Perez-Iratxeta C, Andrade-Navarro MA, Adeyemo A, Patti ME, Semple CA, Hide W (2006) Computational disease gene identification: A concert of methods prioritizes type 2 diabetes and obesity candidate genes. Nucleic Acids Res 34(10):3067-3081
-
(2006)
Nucleic Acids Res
, vol.34
, Issue.10
, pp. 3067-3081
-
-
Tiffin, N.1
Adie, E.2
Turner, F.3
Brunner, H.G.4
Van Driel, M.A.5
Oti, M.6
Lopez-Bigas, N.7
Ouzounis, C.8
Perez-Iratxeta, C.9
Andrade-Navarro, M.A.10
Adeyemo, A.11
Patti, M.E.12
Semple, C.A.13
Hide, W.14
-
62
-
-
15044341082
-
Integration of text- and data-mining using ontologies successfully selects disease gene candidates
-
Tiffin N, Kelso JF, Powell AR, Pan H, Bajic VB, Hide WA (2005) Integration of text- and data-mining using ontologies successfully selects disease gene candidates. Nucleic Acids Res 33(5):1544-1552
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.5
, pp. 1544-1552
-
-
Tiffin, N.1
Kelso, J.F.2
Powell, A.R.3
Pan, H.4
Bajic, V.B.5
Hide, W.A.6
-
63
-
-
48449097800
-
ENDEAVOUR update: A web resource for gene prioritization in multiple species
-
(Web Server issue)
-
Tranchevent LC, Barriot R, Yu S, Van Vooren S, Van Loo P, Coessens B, De Moor B, Aerts S, Moreau Y (2008) ENDEAVOUR update: A web resource for gene prioritization in multiple species. Nucleic Acids Res 36(Web Server issue):W377-W384
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Tranchevent, L.C.1
Barriot, R.2
Yu, S.3
Van Vooren, S.4
Van Loo, P.5
Coessens, B.6
De Moor, B.7
Aerts, S.8
Moreau, Y.9
-
64
-
-
79551643743
-
A guide to web tools to prioritize candidate genes
-
doi:10.1093/ bib/bbq007, bbq007 [pii]
-
Tranchevent LC, Capdevila FB, Nitsch D, De Moor B, De Causmaecker P, Moreau Y (2011) A guide to web tools to prioritize candidate genes. Brief Bioinform 12(1):22-32. doi:10.1093/ bib/bbq007, bbq007 [pii]
-
(2011)
Brief Bioinform
, vol.12
, Issue.1
, pp. 22-32
-
-
Tranchevent, L.C.1
Capdevila, F.B.2
Nitsch, D.3
De Moor, B.4
De Causmaecker, P.5
Moreau, Y.6
-
65
-
-
1542787787
-
POCUS: Mining genomic sequence annotation to predict disease genes
-
Turner FS, Clutterbuck DR, Semple CA (2003) POCUS: Mining genomic sequence annotation to predict disease genes. Genome Biol 4(11):R75
-
(2003)
Genome Biol
, vol.4
, Issue.11
-
-
Turner, F.S.1
Clutterbuck, D.R.2
Semple, C.A.3
-
66
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
doi:10.1038/35001009
-
Uetz P, Giot L, Cagney G, Mansfield TA, Judson RS, Knight JR, Lockshon D, Narayan V, Srinivasan M, Pochart P, Qureshi-Emili A, Li Y, Godwin B, Conover D, Kalbfleisch T, Vijayadamodar G, Yang M, Johnston M, Fields S, Rothberg JM (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403(6770): 623-627. doi:10.1038/35001009
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Giot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emili, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
67
-
-
33646058032
-
A text-mining analysis of the human phenome
-
van Driel MA, Bruggeman J, Vriend G, Brunner HG, Leunissen JA (2006) A text-mining analysis of the human phenome. Eur J Hum Genet 14(5):535-542
-
(2006)
Eur J Hum Genet
, vol.14
, Issue.5
, pp. 535-542
-
-
Van Driel, M.A.1
Bruggeman, J.2
Vriend, G.3
Brunner, H.G.4
Leunissen, J.A.5
-
68
-
-
0037265647
-
A new web-based data mining tool for the identification of candidate genes for human genetic disorders
-
van Driel MA, Cuelenaere K, Kemmeren PP, Leunissen JA, Brunner HG (2003) A new web-based data mining tool for the identification of candidate genes for human genetic disorders. Eur J Hum Genet 11(1):57-63
-
(2003)
Eur J Hum Genet
, vol.11
, Issue.1
, pp. 57-63
-
-
Van Driel, M.A.1
Cuelenaere, K.2
Kemmeren, P.P.3
Leunissen, J.A.4
Brunner, H.G.5
-
69
-
-
23144443079
-
GeneSeeker: Extraction and integration of human disease-related information from web-based genetic databases
-
(Web Server issue)
-
van Driel MA, Cuelenaere K, Kemmeren PP, Leunissen JA, Brunner HG, Vriend G (2005) GeneSeeker: Extraction and integration of human disease-related information from web-based genetic databases. Nucleic Acids Res 33(Web Server issue):W758-W761
-
(2005)
Nucleic Acids Res
, vol.33
-
-
Van Driel, M.A.1
Cuelenaere, K.2
Kemmeren, P.P.3
Leunissen, J.A.4
Brunner, H.G.5
Vriend, G.6
-
70
-
-
76749134818
-
Associating genes and protein complexes with disease via network propagation
-
doi:10.1371/journal.pcbi.1000641
-
Vanunu O, Magger O, Ruppin E, Shlomi T, Sharan R (2010) Associating genes and protein complexes with disease via network propagation. PLoS Comput Biol 6(1):e1000641. doi:10.1371/journal.pcbi.1000641
-
(2010)
PLoS Comput Biol
, vol.6
, Issue.1
-
-
Vanunu, O.1
Magger, O.2
Ruppin, E.3
Shlomi, T.4
Sharan, R.5
-
71
-
-
79955542031
-
Genomic alterations that contribute to the development of isolated and non-isolated congenital diaphragmatic hernia
-
doi:10.1136/jmg.2011.089680, 48/5/299 [pii]
-
Wat MJ, Veenma D, Hogue J, Holder AM, Yu Z, Wat JJ, Hanchard N, Shchelochkov OA, Fernandes CJ, Johnson A, Lally KP, Slavotinek A, Danhaive O, Schaible T, Cheung SW, Rauen KA, Tonk VS, Tibboel D, de Klein A, Scott DA (2011) Genomic alterations that contribute to the development of isolated and non-isolated congenital diaphragmatic hernia. J Med Genet 48(5):299-307. doi:10.1136/jmg.2011.089680, 48/5/299 [pii]
-
(2011)
J Med Genet
, vol.48
, Issue.5
, pp. 299-307
-
-
Wat, M.J.1
Veenma, D.2
Hogue, J.3
Holder, A.M.4
Yu, Z.5
Wat, J.J.6
Hanchard, N.7
Shchelochkov, O.A.8
Fernandes, C.J.9
Johnson, A.10
Lally, K.P.11
Slavotinek, A.12
Danhaive, O.13
Schaible, T.14
Cheung, S.W.15
Rauen, K.A.16
Tonk, V.S.17
Tibboel, D.18
De Klein, A.19
Scott, D.A.20
more..
-
73
-
-
43249114206
-
Network-based global inference of human disease genes
-
doi:msb200827, [pii] 10.1038/msb 2008 27
-
Wu X, Jiang R, Zhang MQ, Li S (2008) Network-based global inference of human disease genes. Mol Syst Biol 4:189. doi:msb200827, [pii] 10.1038/msb.2008.27
-
(2008)
Mol Syst Biol
, vol.4
, pp. 189
-
-
Wu, X.1
Jiang, R.2
Zhang, M.Q.3
Li, S.4
-
74
-
-
33751017706
-
Discovering disease-genes by topological features in human protein-protein interaction network
-
doibtl467 [ii] 101093/bioinformatics/ btl467
-
Xu J, Li Y (2006) Discovering disease-genes by topological features in human protein-protein interaction network. Bioinformatics 22(22):2800-2805. doi:btl467, [pii] 10.1093/bioinformatics/ btl467
-
(2006)
Bioinformatics
, vol.22
, Issue.22
, pp. 2800-2805
-
-
Xu, J.1
Li, Y.2
-
75
-
-
84878889476
-
A vertex similarity-based framework to discover and rank orphan disease-related genes
-
doi:10.1186/1752-0509-6-S3-S8, 1752-0509-6-S3-S8 [pii]
-
Zhu C, Kushwaha A, Berman K, Jegga AG (2012) A vertex similarity-based framework to discover and rank orphan disease-related genes. BMC Syst Biol 6(Suppl 3):S8. doi:10.1186/1752-0509-6-S3-S8, 1752-0509-6-S3-S8 [pii]
-
(2012)
BMC Syst Biol
, vol.6
, Issue.SUPPL. 3
-
-
Zhu, C.1
Kushwaha, A.2
Berman, K.3
Jegga, A.G.4
-
76
-
-
36249020808
-
Candidate gene identification approach: Progress and challenges
-
Zhu M, Zhao S (2007) Candidate gene identification approach: Progress and challenges. Int J Biol Sci 3(7):420-427
-
(2007)
Int J Biol Sci
, vol.3
, Issue.7
, pp. 420-427
-
-
Zhu, M.1
Zhao, S.2
|