-
1
-
-
33646568805
-
Gene prioritization through genomic data fusion
-
Aerts,S. et al. (2006) Gene prioritization through genomic data fusion. Nat. Biotechnol., 24, 537-544.
-
(2006)
Nat. Biotechnol.
, vol.24
, pp. 537-544
-
-
Aerts, S.1
-
2
-
-
0034069495
-
Gene Ontology: tool for the unification of biology
-
Ashburner,M. et al. (2000) Gene Ontology: tool for the unification of biology. Nat. Genet., 25, 25-29.
-
(2000)
Nat. Genet.
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
-
3
-
-
63449105241
-
Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24
-
Birnbaum,S. et al. (2009) Key susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24. Nat. Genet., 41, 473-477.
-
(2009)
Nat. Genet.
, vol.41
, pp. 473-477
-
-
Birnbaum, S.1
-
4
-
-
0035478854
-
Random forests
-
Breiman,L. (2001) Random forests. Mach. Learn., 45, 5-32.
-
(2001)
Mach. Learn.
, vol.45
, pp. 5-32
-
-
Breiman, L.1
-
5
-
-
33751255087
-
Evaluation of clustering algorithms for proteinprotein interaction networks
-
Brohee,S. and van Helden,J. (2006) Evaluation of clustering algorithms for proteinprotein interaction networks. BMC Bioinformatics, 7, 488-507.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 488-507
-
-
Brohee, S.1
van Helden, J.2
-
6
-
-
18744376914
-
Online predicted human interaction database
-
Brown,K.R. and Jurisica,I. (2005) Online predicted human interaction database. Bioinformatics, 21, 2076-2082.
-
(2005)
Bioinformatics
, vol.21
, pp. 2076-2082
-
-
Brown, K.R.1
Jurisica, I.2
-
7
-
-
39049189899
-
Mining Alzheimer disease relevant proteins from integrated protein interactome data
-
World Scientific, Singapore
-
Chen,J.Y. et al. (2006) Mining Alzheimer disease relevant proteins from integrated protein interactome data. Pacific Symposium on Biocomputing. World Scientific, Singapore, pp. 367-378.
-
(2006)
Pacific Symposium on Biocomputing
, pp. 367-378
-
-
Chen, J.Y.1
-
8
-
-
62849126285
-
Disease candidate gene identification and prioritization using protein interaction networks
-
Chen,J. et al. (2009) Disease candidate gene identification and prioritization using protein interaction networks. BMC Bioinformatics, 10, 73-87.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 73-87
-
-
Chen, J.1
-
9
-
-
65249160573
-
Association of mdm2 snp309, age of onset, and gender in cutaneous melanoma
-
Firoz,E.F. et al. (2009) Association of mdm2 snp309, age of onset, and gender in cutaneous melanoma. Clin. Cancer Res., 15, 2573-2580.
-
(2009)
Clin. Cancer Res.
, vol.15
, pp. 2573-2580
-
-
Firoz, E.F.1
-
10
-
-
33646884801
-
Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes
-
Franke,L. et al. (2006). Reconstruction of a functional human gene network, with an application for prioritizing positional candidate genes. Am. J. Hum. Genet., 78, 1011-1025.
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 1011-1025
-
-
Franke, L.1
-
11
-
-
43249125341
-
Using protein complexes to predict phenotypic effects of gene mutation
-
Fraser,H.B. and Plotkin,J.B. (2007) Using protein complexes to predict phenotypic effects of gene mutation. Genome Biol., 8, R252-R261.
-
(2007)
Genome Biol
, vol.8
-
-
Fraser, H.B.1
Plotkin, J.B.2
-
12
-
-
0037580196
-
A similarity-based method for genome-wide prediction of disease-relevant human genes
-
Freudenberg,J. and Propping,P. (2002) A similarity-based method for genome-wide prediction of disease-relevant human genes. Bioinformatics, 18 (Suppl. 2), S110-S115.
-
(2002)
Bioinformatics
, vol.18
, Issue.SUPPL. 2
-
-
Freudenberg, J.1
Propping, P.2
-
13
-
-
34249850089
-
Acomputational system to select candidate genes for complex human traits
-
Gaulton,K.J. et al. (2007) Acomputational system to select candidate genes for complex human traits. Bioinformatics, 23, 1132-1140.
-
(2007)
Bioinformatics
, vol.23
, pp. 1132-1140
-
-
Gaulton, K.J.1
-
14
-
-
33750983361
-
Analysis of protein sequence and interaction data for candidate disease gene prediction
-
George,R.A. et al. (2006) Analysis of protein sequence and interaction data for candidate disease gene prediction. Nucleic Acids Res., 34, e130.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
George, R.A.1
-
15
-
-
34547140875
-
The human disease network
-
Goh,K.-I. et al. (2007) The human disease network. Proc. Natl Acad. Sci. USA, 104, 8685-8690.
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 8685-8690
-
-
Goh, K.-I.1
-
16
-
-
41649119247
-
Protein networks in disease
-
Ideker,T. and Sharan,R. (2008) Protein networks in disease. Genome Res., 18, 644-652.
-
(2008)
Genome Res
, vol.18
, pp. 644-652
-
-
Ideker, T.1
Sharan, R.2
-
17
-
-
36349010138
-
Protein interactions and disease: computational approaches to uncover the etiology of diseases
-
Kann,M.G. (2007) Protein interactions and disease: computational approaches to uncover the etiology of diseases. Brief. Bioinform., 8, 333-346.
-
(2007)
Brief. Bioinform.
, vol.8
, pp. 333-346
-
-
Kann, M.G.1
-
18
-
-
59649125020
-
A network-based method for predicting disease-causing genes
-
Karni,S. et al. (2009) A network-based method for predicting disease-causing genes. J. Comput. Biol., 16, 181-189.
-
(2009)
J. Comput. Biol.
, vol.16
, pp. 181-189
-
-
Karni, S.1
-
19
-
-
70749096913
-
Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants
-
Kathiresan,S. et al. (2009) Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants. Nat. Genet., 41, 334-341.
-
(2009)
Nat. Genet.
, vol.41
, pp. 334-341
-
-
Kathiresan, S.1
-
20
-
-
58149193222
-
Human protein reference database-2009 update
-
Keshava Prasad,T.S. et al. (2008) Human protein reference database-2009 update. Nucleic Acids Res., 37, D767-D772.
-
(2008)
Nucleic Acids Res.
, vol.37
-
-
Keshava Prasad, T.S.1
-
21
-
-
41549139527
-
Walking the interactome for prioritization of candidate disease genes
-
Kohler,S. et al. (2008) Walking the interactome for prioritization of candidate disease genes. Am. J. Hum. Genet., 82, 949-958.
-
(2008)
Am. J. Hum. Genet.
, vol.82
, pp. 949-958
-
-
Kohler, S.1
-
22
-
-
33947095027
-
A human phenome-interactome network of protein complexes implicated in genetic disorders
-
Lage,K. et al. (2007) A human phenome-interactome network of protein complexes implicated in genetic disorders. Nat. Biotechnol., 25, 309-316.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 309-316
-
-
Lage, K.1
-
23
-
-
67650305689
-
Detection of locally over-represented GO terms in protein-protein interaction networks
-
Springer, Heidelberg
-
Lavallee-Adam,M. et al. (2009) Detection of locally over-represented GO terms in protein-protein interaction networks. In Proceedings of RECOMB 2009, Vol. 5541 of Lecture Notes in Computer Science. Springer, Heidelberg, pp. 302-320.
-
(2009)
Proceedings of RECOMB 2009 of Lecture Notes in Computer Science
, vol.5541
, pp. 302-320
-
-
Lavallee-Adam, M.1
-
24
-
-
76249105279
-
Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network
-
Linghu,B. et al. (2009)Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network. Genome Biol., 10, R91.
-
(2009)
Genome Biol
, vol.10
-
-
Linghu, B.1
-
25
-
-
21244435102
-
3R coordination by Fanconi Anemia proteins
-
Macé,G. et al. (2005) 3R coordination by Fanconi Anemia proteins. Biochimie, 87, 647-658.
-
(2005)
Biochimie
, vol.87
, pp. 647-658
-
-
Macé, G.1
-
26
-
-
33846700890
-
CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data
-
Ma,X. et al. (2007) CGI: a new approach for prioritizing genes by combining gene expression and protein-protein interaction data. Bioinformatics, 23, 215-221.
-
(2007)
Bioinformatics
, vol.23
, pp. 215-221
-
-
Ma, X.1
-
27
-
-
34147122065
-
Mendelian inheritance in man and its online version
-
McKusick,V. (2007) Mendelian inheritance in man and its online version, OMIM. Am. J. Hum. Genet., 80, 588-604.
-
(2007)
OMIM. Am. J. Hum. Genet.
, vol.80
, pp. 588-604
-
-
McKusick, V.1
-
28
-
-
29144442904
-
Whole-proteome prediction of protein function via graphtheoretic analysis of interaction maps
-
Nabieva,E. et al. (2005) Whole-proteome prediction of protein function via graphtheoretic analysis of interaction maps. Bioinformatics, 21, 302-310.
-
(2005)
Bioinformatics
, vol.21
, pp. 302-310
-
-
Nabieva, E.1
-
30
-
-
67650456399
-
Finding biologically accurate clusterings in hierarchical tree decompositions using the variation of information
-
Springer Heidelberg
-
Navlakha,S. et al. (2009a)Finding biologically accurate clusterings in hierarchical tree decompositions using the variation of information. In Proceedings of RECOMB 2009, Vol. 5541 of Lecture Notes in Computer Science. Springer, Heidelberg, pp. 400-417.
-
(2009)
In Proceedings of RECOMB 2009 of Lecture Notes in Computer Science
, vol.5541
, pp. 400-417
-
-
Navlakha, S.1
-
31
-
-
59649120244
-
Revealing biological modules via graph summarization
-
Navlakha,S. et al. (2009b) Revealing biological modules via graph summarization. J. Comput. Biol., 16, 253-264.
-
(2009)
J. Comput. Biol.
, vol.16
, pp. 253-264
-
-
Navlakha, S.1
-
32
-
-
33845545435
-
The modular nature of genetic diseases
-
Oti,M. and Brunner,H.G. (2007) The modular nature of genetic diseases. Clin. Genet., 71, 1-11.
-
(2007)
Clin. Genet.
, vol.71
, pp. 1-11
-
-
Oti, M.1
Brunner, H.G.2
-
33
-
-
33747035889
-
Predicting disease genes using protein-protein interactions
-
Oti,M. et al. (2006) Predicting disease genes using protein-protein interactions. J. Med. Genet., 43, 691-698.
-
(2006)
J. Med. Genet.
, vol.43
, pp. 691-698
-
-
Oti, M.1
-
34
-
-
46249127253
-
Identifying gene-disease associations using centrality on a literature mined gene-interaction network
-
Ozgur,A. et al. (2008) Identifying gene-disease associations using centrality on a literature mined gene-interaction network. Bioinformatics, 24, i277-i285.
-
(2008)
Bioinformatics
, vol.24
-
-
Ozgur, A.1
-
35
-
-
53749102828
-
Network-based model weighting to detect multiple loci influencing complex diseases
-
Pan,W. (2008) Network-based model weighting to detect multiple loci influencing complex diseases. Hum. Genet., 124, 225-234.
-
(2008)
Hum. Genet.
, vol.124
, pp. 225-234
-
-
Pan, W.1
-
36
-
-
34547601280
-
Update of the G2D tool for prioritization of gene candidates to inherited diseases
-
Perez-Iratxeta,C. et al. (2007) Update of the G2D tool for prioritization of gene candidates to inherited diseases. Nucleic Acids Res., 35, W212-W216.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Perez-Iratxeta, C.1
-
37
-
-
47349128648
-
An integrated approach to inferring gene-disease associations in humans
-
Radivojac,P. et al. (2008) An integrated approach to inferring gene-disease associations in humans. Proteins, 72, 1030-1037.
-
(2008)
Proteins
, vol.72
, pp. 1030-1037
-
-
Radivojac, P.1
-
38
-
-
36348967978
-
Discovery of protein interaction networks shared by diseases
-
World Scientific, Singapore
-
Sam,L. et al. (2007) Discovery of protein interaction networks shared by diseases. In Pacific Symposium on Biocomputing. World Scientific, Singapore, pp. 76-87.
-
(2007)
In Pacific Symposium on Biocomputing
, pp. 76-87
-
-
Sam, L.1
-
39
-
-
0033669189
-
A network of protein-protein interactions in yeast
-
Schwikowski,B. et al. (2000) A network of protein-protein interactions in yeast. Nat. Biotechnol., 18, 1257-1261.
-
(2000)
Nat. Biotechnol.
, vol.18
, pp. 1257-1261
-
-
Schwikowski, B.1
-
40
-
-
38549097071
-
The UniProt Consortium The universal protein resource (UniProt)
-
The UniProt Consortium (2008)The universal protein resource (UniProt). Nucleic Acids Res., 36, D190-D195.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
-
42
-
-
61849113253
-
Graph clustering via a discrete uncoupling process
-
Van Dongen,S. (2008) Graph clustering via a discrete uncoupling process. SIAM J. Matrix Anal. Appl., 30, 121-141.
-
(2008)
SIAM J. Matrix Anal. Appl.
, vol.30
, pp. 121-141
-
-
Van Dongen, S.1
-
43
-
-
33646058032
-
A text-mining analysis of the human phenome
-
van Driel,M.A. et al. (2006) A text-mining analysis of the human phenome. Eur. J. Hum. Genet., 14, 535-542.
-
(2006)
Eur. J. Hum. Genet.
, vol.14
, pp. 535-542
-
-
van Driel, M.A.1
-
45
-
-
43249114206
-
Network-based global inference of human disease genes
-
Wu,X. et al. (2008) Network-based global inference of human disease genes. Mol. Syst. Biol., 4, 189.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 189
-
-
Wu, X.1
-
46
-
-
58049220319
-
Align human interactome with phenome to identify causative genes and networks underlying disease families
-
Wu,X. et al. (2009) Align human interactome with phenome to identify causative genes and networks underlying disease families. Bioinformatics, 25, 98-104.
-
(2009)
Bioinformatics
, vol.25
, pp. 98-104
-
-
Wu, X.1
|