GeneSeeker: Extraction and integration of human disease-related information from web-based genetic databases

Nucleic Acids Research

Volumn 33, Issue SUPPL. 2, 2005, Pages

  van Driel, M A ^a   Cuelenaere, K ^b   Kemmeren, P P C W ^c   Leunissen, J A M ^b,d   Brunner, H G ^a   Vriend, Gert ^a  

^a RADBOUD UNIVERSITY MEDICAL CENTER   (Netherlands)

^b Dalicon BV   (Netherlands)

^c UNIVERSITY MEDICAL CENTER UTRECHT   (Netherlands)

^d WAGENINGEN UNIVERSITY   (Netherlands)

Author keywords

[No Author keywords available]

Indexed keywords

ACCESS TO INFORMATION; ARTICLE; BIOINFORMATICS; COMPUTER INTERFACE; COMPUTER PROGRAM; CONTROLLED STUDY; GENE EXPRESSION; GENE IDENTIFICATION; GENE LOCATION; GENE MAPPING; GENETIC DATABASE; GENETIC DISORDER; HUMAN; HUMAN GENETICS; INFORMATION PROCESSING; MOUSE; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; CLIENT SERVER APPLICATION; DATA EXTRACTION; CHROMOSOME MAP; GENETIC PREDISPOSITION; GENETICS; INTERNET; SYNDROME; SYSTEM ANALYSIS;

CHROMOSOME MAPPING; DATABASES, GENETIC; GENE EXPRESSION; GENETIC DISEASES, INBORN; GENETIC PREDISPOSITION TO DISEASE; HUMANS; INTERNET; PHENOTYPE; SOFTWARE; SYNDROME; SYSTEMS INTEGRATION; USER-COMPUTER INTERFACE;

EID: 23144443079     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gki435     Document Type: Article

References (18)

1. Blackshaw,S., Fraioli,R.E., Furukawa,T. and Cepko,C.L. (2001) Comprehensive analysis of photoreceptor gene expression and the identification of candidate retinal disease genes. Cell, 107, 579-589.
2. den Hollander,A.I., van Driel,M.A., de Kok,Y.J., van de Pol,D.J., Hoyng,C.B., Brunner,H.G., Deutman,A.F. and Cremers,F.P. (1999) Isolation and mapping of novel candidate genes for retinal disorders using suppression subtractive hybridization. Genomics, 58, 240-249.
3. Dryja,T.P. (1997) Gene-based approach to human gene-phenotype correlations. Proc. Natl Acad. Sci. USA, 94, 12117-12121.
4. Chiang,A.P., Nishimura,D., Searby,C., Elbedour,K., Carmi,R., Ferguson,A.L., Secrist,J., Braun,T., Casavant,T., Stone,E.M. et al. (2004) Comparative genomic analysis identifies an ADP-ribosylation factor-like gene as the cause of Bardet-Biedl syndrome (BBS3). Am. J. Hum. Genet., 75, 475-484.
5. van Driel,M.A., Cuelenaere,K., Kemmeren,P.P., Leunissen,J.A. and Brunner,H.G. (2003) A new web-based data mining tool for the identification of candidate genes for human genetic disorders. Eur. J. Hum. Genet., 11, 57-63.
6. Hamosh,A., Scott,A.F., Amberger,J., Bocchini,C., Valle,D. and McKusick,V.A. (2002) Online Mendelian Inheritance in Man (OMIM), a knowledgebase of human genes and genetic disorders. Nucleic Acids Res., 30, 52-55.
7. Etzold,T., Ulyanov,A. and Argos,P. (1996) SRS: Information retrieval system for molecular biology data banks. Methods Enzymol., 266, 114-128.
8. Edwards,J.H. (1991) The Oxford Grid. Ann. Hum. Genet., 55, 17-31.
9. Apweiler,R., Bairoch,A., Wu,C.H., Barker,W.C., Boeckmann,B., Ferro,S., Gasteiger,E., Huang,H., Lopez,R., Magrane,M. et al. (2004) UniProt: The Universal Protein knowledgebase. Nucleic Acids Res., 32, D115-D119.
10. van Steensel,M.A., Celli,J., van Bokhoven,J.H. and Brunner,H.G. (1999) Probing the gene expression database for candidate genes. Eur. J. Hum. Genet., 7, 910-919.
11. Brewer,C., Holloway,S., Zawalnyski,P., Schinzel,A. and FitzPatrick,D. (1998) A chromosomal deletion map of human malformations. Am. J. Hum. Genet., 63, 1153-1159.
12. Brewer,C., Holloway,S., Zawalnyski,P., Schinzel,A. and FitzPatrick,D. (1999) A chromosomal duplication map of malformations: Regions of suspected haplo- and triplolethality - and tolerance of segmental aneuploidy - in humans. Am. J. Hum. Genet., 64, 1702-1708.
13. Veugelers,M., Bressan,M., McDermott,D.A., Weremowicz,S., Morton,C.C., Mabry,C.C., Lefaivre,J.F., Zunamon,A., Destree,A., Chaudron,J.M. et al. (2004) Mutation of perinatal myosin heavy chain associated with a Carney complex variant. N. Engl. J. Med., 351, 460-469.
14. Safran,M., Chalifa-Caspi,V., Shmueli,O., Olender,T., Lapidot,M., Rosen,N., Shmoish,M., Peter,Y., Glusman,G., Feldmesser,E. et al. (2003) Human Gene-Centric Databases at the Weizmann Institute of Science: GeneCards, UDB, CroW 21 and HORDE. Nucleic Acids Res., 31, 142-146.
15. Blake,J.A., Richardson,J.E., Bult,C.J., Kadin,J.A. and Eppig,J.T. (2003) MGD: The Mouse Genome Database. Nucleic Acids Res., 31, 193-195.
16. Letovsky,S.I., Cottingham,R.W., Porter,C.J. and Li,P.W. (1998) GDB: The Human Genome Database. Nucleic Acids Res., 26, 94-99.
17. Ringwald,M., Eppig,J.T., Begley,D.A., Corradi,J.P., McCright,I.J., Hayamizu,T.F., Hill,D.P., Kadin,J.A. and Richardson,J.E. (2001) The Mouse Gene Expression Database (GXD). Nucleic Acids Res., 29, 98-101.
18. Woychik,R.P., Wassom,J.S., Kingsbury,D. and Jacobson,D.A. (1993) TBASE: a computerized database for transgenic animals and targeted mutations. Nature, 363, 375-376.