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Volumn 112, Issue 8, 2015, Pages 1663-1672

Genetically expanded cell-free protein synthesis using endogenous pyrrolysyl orthogonal translation system

Author keywords

Amber suppression; Cell free protein synthesis; Genetic code expansion; Pyrrolysyl tRNA synthetase

Indexed keywords

AMINO ACIDS; CELLS; CYTOLOGY; PROTEINS;

EID: 84932197247     PISSN: 00063592     EISSN: 10970290     Source Type: Journal    
DOI: 10.1002/bit.25587     Document Type: Article
Times cited : (46)

References (49)
  • 1
    • 79960246803 scopus 로고    scopus 로고
    • Label-free, single protein detection on a near-infrared fluorescent single-walled carbon nanotube/protein microarray fabricated by cell-free synthesis
    • Ahn J-H, Kim J-H, Reuel NF, Barone PW, Boghossian A a, Zhang J, Yoon H, Chang AC, Hilmer AJ, Strano MS. 2011. Label-free, single protein detection on a near-infrared fluorescent single-walled carbon nanotube/protein microarray fabricated by cell-free synthesis. Nano Lett 11:2743-2752.
    • (2011) Nano Lett , vol.11 , pp. 2743-2752
    • Ahn, J.-H.1    Kim, J.-H.2    Reuel, N.F.3    Barone, P.W.4    Boghossian, A.a.5    Zhang, J.6    Yoon, H.7    Chang, A.C.8    Hilmer, A.J.9    Strano, M.S.10
  • 2
    • 84878892281 scopus 로고    scopus 로고
    • Cell-free co-production of an orthogonal transfer RNA activates efficient site-specific non-natural amino acid incorporation
    • Albayrak C, Swartz JR. 2013. Cell-free co-production of an orthogonal transfer RNA activates efficient site-specific non-natural amino acid incorporation. Nucleic Acids Res 41:5949-5963.
    • (2013) Nucleic Acids Res , vol.41 , pp. 5949-5963
    • Albayrak, C.1    Swartz, J.R.2
  • 3
    • 8344222343 scopus 로고    scopus 로고
    • Prolegomena to future experimental efforts on genetic code engineering by expanding its amino acid repertoire
    • Budisa N. 2004. Prolegomena to future experimental efforts on genetic code engineering by expanding its amino acid repertoire. Angew Chem Int Ed Engl 43:6426-6463.
    • (2004) Angew Chem Int Ed Engl , vol.43 , pp. 6426-6463
    • Budisa, N.1
  • 5
    • 84894033400 scopus 로고    scopus 로고
    • Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system
    • Caschera F, Noireaux V. 2014. Synthesis of 2.3 mg/ml of protein with an all Escherichia coli cell-free transcription-translation system. Biochimie 99:162-168.
    • (2014) Biochimie , vol.99 , pp. 162-168
    • Caschera, F.1    Noireaux, V.2
  • 6
    • 84882706773 scopus 로고    scopus 로고
    • Cell-free platforms for flexible expression and screening of enzymes
    • Catherine C, Lee K-H, Oh S-J, Kim D-M. 2013. Cell-free platforms for flexible expression and screening of enzymes. Biotechnol Adv 31:797-803.
    • (2013) Biotechnol Adv , vol.31 , pp. 797-803
    • Catherine, C.1    Lee, K.-H.2    Oh, S.-J.3    Kim, D.-M.4
  • 7
    • 84885841617 scopus 로고    scopus 로고
    • Protein nanomachines assembly modes: Cell-free expression and biochip perspectives
    • Daube SS, Bar-Ziv RH. 2013. Protein nanomachines assembly modes: Cell-free expression and biochip perspectives. Wiley Interdiscip Rev Nanomed Nanobiotechnol 5:613-628.
    • (2013) Wiley Interdiscip Rev Nanomed Nanobiotechnol , vol.5 , pp. 613-628
    • Daube, S.S.1    Bar-Ziv, R.H.2
  • 8
    • 84915756442 scopus 로고    scopus 로고
    • Designing logical codon reassignment - Expanding the chemistry in biology
    • Dumas A, Lercher L, Spicer CD, Davis BG. 2014. Designing logical codon reassignment - Expanding the chemistry in biology. Chem Sci 6(1):50-69.
    • (2014) Chem Sci , vol.6 , Issue.1 , pp. 50-69
    • Dumas, A.1    Lercher, L.2    Spicer, C.D.3    Davis, B.G.4
  • 10
    • 58249085422 scopus 로고    scopus 로고
    • High-level cell-free synthesis yields of proteins containing site-specific non-natural amino acids
    • Goerke AR, Swartz JR. 2009. High-level cell-free synthesis yields of proteins containing site-specific non-natural amino acids. Biotechnol Bioeng 102:400-416.
    • (2009) Biotechnol Bioeng , vol.102 , pp. 400-416
    • Goerke, A.R.1    Swartz, J.R.2
  • 11
    • 0242361562 scopus 로고    scopus 로고
    • Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control
    • Hayes CS, Sauer RT. 2003. Cleavage of the A site mRNA codon during ribosome pausing provides a mechanism for translational quality control. Mol Cell 12:903-911.
    • (2003) Mol Cell , vol.12 , pp. 903-911
    • Hayes, C.S.1    Sauer, R.T.2
  • 13
    • 84896452607 scopus 로고    scopus 로고
    • Cell-free protein synthesis from a release factor 1 deficient escherichia coli activates efficient and multiple site-specific nonstandard amino acid incorporation
    • Hong SH, Ntai I, Haimovich AD, Kelleher NL, Isaacs FJ, Jewett MC. 2014. Cell-free protein synthesis from a release factor 1 deficient escherichia coli activates efficient and multiple site-specific nonstandard amino acid incorporation. ACS Synth Biol 3:398-409.
    • (2014) ACS Synth Biol , vol.3 , pp. 398-409
    • Hong, S.H.1    Ntai, I.2    Haimovich, A.D.3    Kelleher, N.L.4    Isaacs, F.J.5    Jewett, M.C.6
  • 14
    • 41849151162 scopus 로고    scopus 로고
    • Continuous-exchange cell-free protein synthesis using PCR-generated DNA and an RNase E-deficient extract
    • Jun SY, Kang SH, Lee K-H. 2008. Continuous-exchange cell-free protein synthesis using PCR-generated DNA and an RNase E-deficient extract. Biotechniques 44:387-391.
    • (2008) Biotechniques , vol.44 , pp. 387-391
    • Jun, S.Y.1    Kang, S.H.2    Lee, K.-H.3
  • 15
    • 84874312155 scopus 로고    scopus 로고
    • Artificial environments for the co-translational stabilization of cell-free expressed proteins
    • Kai L, Dötsch V, Kaldenhoff R, Bernhard F. 2013. Artificial environments for the co-translational stabilization of cell-free expressed proteins. PLoS ONE 8:e56637.
    • (2013) PLoS ONE , vol.8 , pp. e56637
    • Kai, L.1    Dötsch, V.2    Kaldenhoff, R.3    Bernhard, F.4
  • 16
    • 34147092704 scopus 로고    scopus 로고
    • Cell-free production of scFv fusion proteins: An efficient approach for personalized lymphoma vaccines
    • Kanter G, Yang J, Voloshin A, Levy S, Swartz JR, Levy R. 2007. Cell-free production of scFv fusion proteins: An efficient approach for personalized lymphoma vaccines. Blood 109:3393-3399.
    • (2007) Blood , vol.109 , pp. 3393-3399
    • Kanter, G.1    Yang, J.2    Voloshin, A.3    Levy, S.4    Swartz, J.R.5    Levy, R.6
  • 17
    • 13944274948 scopus 로고    scopus 로고
    • The past, present and future of cell-free protein synthesis
    • Katzen F, Chang G, Kudlicki W. 2005. The past, present and future of cell-free protein synthesis. Trends Biotechnol 23:150-156.
    • (2005) Trends Biotechnol , vol.23 , pp. 150-156
    • Katzen, F.1    Chang, G.2    Kudlicki, W.3
  • 20
    • 0034326431 scopus 로고    scopus 로고
    • Translational termination comes of age
    • Kisselev LL, Buckingham RH. 2000. Translational termination comes of age. Trends Biochem Sci 25:561-566. http://www.ncbi.nlm.nih.go
    • (2000) Trends Biochem Sci , vol.25 , pp. 561-566
    • Kisselev, L.L.1    Buckingham, R.H.2
  • 22
    • 70449571896 scopus 로고    scopus 로고
    • A pyrrolysine analogue for site-specific protein ubiquitination
    • Li X, Fekner T, Ottesen JJ, Chan MK. 2009. A pyrrolysine analogue for site-specific protein ubiquitination. Angew Chem Int Ed Engl 48:9184-9187.
    • (2009) Angew Chem Int Ed Engl , vol.48 , pp. 9184-9187
    • Li, X.1    Fekner, T.2    Ottesen, J.J.3    Chan, M.K.4
  • 23
    • 79751502382 scopus 로고    scopus 로고
    • Regulation of transcription by unnatural amino acids
    • Liu CC, Qi L, Yanofsky C, Arkin AP. 2011. Regulation of transcription by unnatural amino acids. Nat Biotechnol 29:164-168.
    • (2011) Nat Biotechnol , vol.29 , pp. 164-168
    • Liu, C.C.1    Qi, L.2    Yanofsky, C.3    Arkin, A.P.4
  • 24
    • 16344377955 scopus 로고    scopus 로고
    • Streamlining Escherichia coli S30 extract preparation for economical cell-free protein synthesis
    • Liu D, V, Zawada JF, Swartz JR. 2005. Streamlining Escherichia coli S30 extract preparation for economical cell-free protein synthesis. Biotechnol Prog 21:460-465.
    • (2005) Biotechnol Prog , vol.21 , pp. 460-465
    • Liu, V.D.1    Zawada, J.F.2    Swartz, J.R.3
  • 25
    • 67649625295 scopus 로고    scopus 로고
    • Genetic encoding and labeling of aliphatic azides and alkynes in recombinant proteins via a pyrrolysyl-tRNA Synthetase/tRNA(CUA) pair and click chemistry
    • Nguyen DP, Lusic H, Neumann H, Kapadnis PB, Deiters A, Chin JW. 2009. Genetic encoding and labeling of aliphatic azides and alkynes in recombinant proteins via a pyrrolysyl-tRNA Synthetase/tRNA(CUA) pair and click chemistry. J Am Chem Soc 131:8720-8721.
    • (2009) J Am Chem Soc , vol.131 , pp. 8720-8721
    • Nguyen, D.P.1    Lusic, H.2    Neumann, H.3    Kapadnis, P.B.4    Deiters, A.5    Chin, J.W.6
  • 26
    • 84861850079 scopus 로고    scopus 로고
    • Global analysis of chaperone effects using a reconstituted cell-free translation system
    • Niwa T, Kanamori T, Ueda T, Taguchi H. 2012. Global analysis of chaperone effects using a reconstituted cell-free translation system. Proc Natl Acad Sci USA 109:8937-8942.
    • (2012) Proc Natl Acad Sci USA , vol.109 , pp. 8937-8942
    • Niwa, T.1    Kanamori, T.2    Ueda, T.3    Taguchi, H.4
  • 27
    • 84868088312 scopus 로고    scopus 로고
    • Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion
    • O'Donoghue P, Prat L, Heinemann IU, Ling J, Odoi K, Liu WR, Söll D. 2012. Near-cognate suppression of amber, opal and quadruplet codons competes with aminoacyl-tRNAPyl for genetic code expansion. FEBS Lett 586:3931-3937.
    • (2012) FEBS Lett , vol.586 , pp. 3931-3937
    • O'Donoghue, P.1    Prat, L.2    Heinemann, I.U.3    Ling, J.4    Odoi, K.5    Liu, W.R.6    Söll, D.7
  • 28
    • 0038389836 scopus 로고    scopus 로고
    • From genes to proteins: In vitro expression of rickettsial proteins
    • Renesto P, Raoult D. 2003. From genes to proteins: In vitro expression of rickettsial proteins. Ann NY Acad Sci 990:642-652.
    • (2003) Ann NY Acad Sci , vol.990 , pp. 642-652
    • Renesto, P.1    Raoult, D.2
  • 29
    • 84892365296 scopus 로고    scopus 로고
    • Engine out of the chassis: Cell-free protein synthesis and its uses
    • Rosenblum G, Cooperman BS. 2014. Engine out of the chassis: Cell-free protein synthesis and its uses. FEBS Lett 588:261-268.
    • (2014) FEBS Lett , vol.588 , pp. 261-268
    • Rosenblum, G.1    Cooperman, B.S.2
  • 30
  • 31
    • 78649788244 scopus 로고    scopus 로고
    • Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70
    • Shin J, Noireaux V. 2010. Efficient cell-free expression with the endogenous E. Coli RNA polymerase and sigma factor 70. J Biol Eng 4:1-9.
    • (2010) J Biol Eng , vol.4 , pp. 1-9
    • Shin, J.1    Noireaux, V.2
  • 32
    • 84863610029 scopus 로고    scopus 로고
    • An E. coli cell-free expression toolbox: Application to synthetic gene circuits and artificial cells
    • Shin J, Noireaux V. 2012. An E. coli cell-free expression toolbox: Application to synthetic gene circuits and artificial cells. ACS Synth Biol 1:29-41.
    • (2012) ACS Synth Biol , vol.1 , pp. 29-41
    • Shin, J.1    Noireaux, V.2
  • 33
    • 84895068367 scopus 로고    scopus 로고
    • Alternative fermentation conditions for improved Escherichia coli-based cell-free protein synthesis for proteins requiring supplemental components for proper synthesis
    • Smith MT, Hawes AK, Shrestha P, Rainsdon JM, Wu JC, Bundy BC. 2014. Alternative fermentation conditions for improved Escherichia coli-based cell-free protein synthesis for proteins requiring supplemental components for proper synthesis. Process Biochem 49:217-222.
    • (2014) Process Biochem , vol.49 , pp. 217-222
    • Smith, M.T.1    Hawes, A.K.2    Shrestha, P.3    Rainsdon, J.M.4    Wu, J.C.5    Bundy, B.C.6
  • 34
    • 84879754159 scopus 로고    scopus 로고
    • Enhanced yield of recombinant proteins with site-specifically incorporated unnatural amino acids using a cell-free expression system
    • Smolskaya S, Zhang ZJ, Alfonta L. 2013. Enhanced yield of recombinant proteins with site-specifically incorporated unnatural amino acids using a cell-free expression system. PLoS ONE 8:e68363.
    • (2013) PLoS ONE , vol.8 , pp. e68363
    • Smolskaya, S.1    Zhang, Z.J.2    Alfonta, L.3
  • 35
    • 0024297305 scopus 로고
    • A continuous cell-free translation system capable of producing polypeptides in high yield
    • Spirin a S, Baranov VI, Ryabova a L, Ovodov SY, Alakhov YB. 1988. A continuous cell-free translation system capable of producing polypeptides in high yield. Science 242:1162-1164.
    • (1988) Science , vol.242 , pp. 1162-1164
    • Spirin, A.S.1    Baranov, V.I.2    Ryabova a, L.3    Ovodov, S.Y.4    Alakhov, Y.B.5
  • 36
    • 84886838580 scopus 로고    scopus 로고
    • Protocols for implementing an escherichia coli based TX-TL cell-free expression system for synthetic biology
    • Sun ZZ, Hayes a C, Shin J, Caschera F, Murray RM, Noireaux V. 2013. Protocols for implementing an escherichia coli based TX-TL cell-free expression system for synthetic biology. J Vis Exp 79:1-15.
    • (2013) J Vis Exp , vol.79 , pp. 1-15
    • Sun, Z.Z.1    Hayes a, C.2    Shin, J.3    Caschera, F.4    Murray, R.M.5    Noireaux, V.6
  • 37
    • 1842596222 scopus 로고    scopus 로고
    • Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli
    • Sunohara T, Jojima K, Tagami H, Inada T, Aiba H. 2004. Ribosome stalling during translation elongation induces cleavage of mRNA being translated in Escherichia coli. J Biol Chem 279:15368-15375.
    • (2004) J Biol Chem , vol.279 , pp. 15368-15375
    • Sunohara, T.1    Jojima, K.2    Tagami, H.3    Inada, T.4    Aiba, H.5
  • 38
    • 33745035191 scopus 로고    scopus 로고
    • Developing cell-free biology for industrial applications
    • Swartz J. 2006. Developing cell-free biology for industrial applications. J Ind Microbiol Biotechnol 33:476-485.
    • (2006) J Ind Microbiol Biotechnol , vol.33 , pp. 476-485
    • Swartz, J.1
  • 39
    • 80053948970 scopus 로고    scopus 로고
    • Artificial extracellular matrix proteins containing phenylalanine analogues biosynthesized in bacteria using T7 expression system and the PEGylation
    • Takasu A, Kondo S, Ito A, Furukawa Y, Higuchi M, Kinoshita T, Kwon I. 2011. Artificial extracellular matrix proteins containing phenylalanine analogues biosynthesized in bacteria using T7 expression system and the PEGylation. Biomacromolecules 12:3444-3452.
    • (2011) Biomacromolecules , vol.12 , pp. 3444-3452
    • Takasu, A.1    Kondo, S.2    Ito, A.3    Furukawa, Y.4    Higuchi, M.5    Kinoshita, T.6    Kwon, I.7
  • 40
    • 84881321639 scopus 로고    scopus 로고
    • Molecular crowding shapes gene expression in synthetic cellular nanosystems
    • Tan C, Saurabh S, Bruchez MP, Schwartz R, Leduc P. 2013. Molecular crowding shapes gene expression in synthetic cellular nanosystems. Nat Nanotechnol 8:602-608.
    • (2013) Nat Nanotechnol , vol.8 , pp. 602-608
    • Tan, C.1    Saurabh, S.2    Bruchez, M.P.3    Schwartz, R.4    Leduc, P.5
  • 41
    • 0031854986 scopus 로고    scopus 로고
    • Man-made cell-like compartments for molecular evolution
    • Tawfik DS, Griffiths AD. 1998. Man-made cell-like compartments for molecular evolution. Nat Biotechnol 16:652-656.
    • (1998) Nat Biotechnol , vol.16 , pp. 652-656
    • Tawfik, D.S.1    Griffiths, A.D.2
  • 44
    • 84898629934 scopus 로고    scopus 로고
    • Pyrrolysyl-tRNA synthetase: An ordinary enzyme but an outstanding genetic code expansion tool
    • Wan W, Tharp JM, Liu WR. 2014. Pyrrolysyl-tRNA synthetase: An ordinary enzyme but an outstanding genetic code expansion tool. Biochim Biophys Acta 1844:1059-1070.
    • (2014) Biochim Biophys Acta , vol.1844 , pp. 1059-1070
    • Wan, W.1    Tharp, J.M.2    Liu, W.R.3
  • 45
    • 0035917812 scopus 로고    scopus 로고
    • Expanding the genetic code of Escherichia coli
    • Wang L, Brock a, Herberich B, Schultz PG. 2001. Expanding the genetic code of Escherichia coli. Science 292:498-500.
    • (2001) Science , vol.292 , pp. 498-500
    • Wang, L.1    Brock, A.2    Herberich, B.3    Schultz, P.G.4
  • 46
    • 25444494737 scopus 로고    scopus 로고
    • High-level expression of soluble human beta-defensin-2 fused with green fluorescent protein in Escherichia coli cell-free system
    • Xu Z, Chen H, Yin X, Xu N, Cen P. 2005. High-level expression of soluble human beta-defensin-2 fused with green fluorescent protein in Escherichia coli cell-free system. Appl Biochem Biotechno 127:53-62.
    • (2005) Appl Biochem Biotechno , vol.127 , pp. 53-62
    • Xu, Z.1    Chen, H.2    Yin, X.3    Xu, N.4    Cen, P.5
  • 48
    • 73149104141 scopus 로고    scopus 로고
    • An enhanced system for unnatural amino acid mutagenesis in E. coli
    • Young TS, Ahmad I, Yin JA, Schultz PG. 2010. An enhanced system for unnatural amino acid mutagenesis in E. coli. J Mol Biol 395:361-374.
    • (2010) J Mol Biol , vol.395 , pp. 361-374
    • Young, T.S.1    Ahmad, I.2    Yin, J.A.3    Schultz, P.G.4
  • 49
    • 79956158054 scopus 로고    scopus 로고
    • Microscale to manufacturing scale-up of cell-free cytokine production?a new approach for shortening protein production development timelines
    • Zawada JF, Yin G, Steiner AR, Yang J, Naresh A, Roy SM, Gold DS, Heinsohn HG, Murray CJ. 2011. Microscale to manufacturing scale-up of cell-free cytokine production?a new approach for shortening protein production development timelines. Biotechnol Bioeng 108:1570-1578.
    • (2011) Biotechnol Bioeng , vol.108 , pp. 1570-1578
    • Zawada, J.F.1    Yin, G.2    Steiner, A.R.3    Yang, J.4    Naresh, A.5    Roy, S.M.6    Gold, D.S.7    Heinsohn, H.G.8    Murray, C.J.9


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