-
1
-
-
79955945767
-
Sequential establishment of marks on soluble histones H3 and H4
-
Alvarez F, Munoz F, Schilcher P, Imhof A, Almouzni G, Loyola A. 2011. Sequential establishment of marks on soluble histones H3 and H4. J Biol Chem 286: 17714-17721.
-
(2011)
J Biol Chem
, vol.286
, pp. 17714-17721
-
-
Alvarez, F.1
Munoz, F.2
Schilcher, P.3
Imhof, A.4
Almouzni, G.5
Loyola, A.6
-
2
-
-
85027919146
-
HDAC-mediated suppressionof histone turnover promotes epigenetic stability of heterochromatin
-
Aygün O, Mehta S, Grewal SI. 2013. HDAC-mediated suppressionof histone turnover promotes epigenetic stability of heterochromatin. Nat Struct Mol Biol 20: 547-554.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 547-554
-
-
Aygün, O.1
Mehta, S.2
Grewal, S.I.3
-
3
-
-
0041828954
-
FACT facilitates transcription-dependent nucleosome alteration
-
Belotserkovskaya R, Oh S, Bondarenko VA, Orphanides G, Studitsky VM, Reinberg D.2003. FACT facilitates transcription-dependent nucleosome alteration. Science 301: 1090-1093.
-
(2003)
Science
, vol.301
, pp. 1090-1093
-
-
Belotserkovskaya, R.1
Oh, S.2
Bondarenko, V.A.3
Orphanides, G.4
Studitsky, V.M.5
Reinberg, D.6
-
4
-
-
77956541101
-
Telomeres avoid end detection by severing the checkpoint signal transduction pathway
-
Carneiro T, Khair L, Reis CC, Borges V, Moser BA, Nakamura TM, Ferreira MG. 2010. Telomeres avoid end detection by severing the checkpoint signal transduction pathway. Nature 467: 228-232.
-
(2010)
Nature
, vol.467
, pp. 228-232
-
-
Carneiro, T.1
Khair, L.2
Reis, C.C.3
Borges, V.4
Moser, B.A.5
Nakamura, T.M.6
Ferreira, M.G.7
-
5
-
-
84876365300
-
Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription
-
Carvalho S, Raposo AC, Martins FB, Grosso AR, Sridhara SC, Rino J, Carmo-Fonseca M, de Almeida SF. 2013. Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription. Nucleic Acids Res 41: 2881-2893.
-
(2013)
Nucleic Acids Res
, vol.41
, pp. 2881-2893
-
-
Carvalho, S.1
Raposo, A.C.2
Martins, F.B.3
Grosso, A.R.4
Sridhara, S.C.5
Rino, J.6
Carmo-Fonseca, M.7
De Almeida, S.F.8
-
6
-
-
31144445949
-
Dynamic regulation of replication independent deposition of histone H3 in fission yeast
-
Choi ES, Shin JA, Kim HS, Jang YK. 2005. Dynamic regulation of replication independent deposition of histone H3 in fission yeast. Nucleic Acids Res 33: 7102-7110.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 7102-7110
-
-
Choi, E.S.1
Shin, J.A.2
Kim, H.S.3
Jang, Y.K.4
-
7
-
-
84866914587
-
Factors that promote H3 chromatin integrity during transcription prevent promiscuous deposition of CENP-A(Cnp1) in fission yeast
-
Choi ES, Stralfors A, Catania S, Castillo AG, Svensson JP, Pidoux AL, Ekwall K, Allshire RC. 2012. Factors that promote H3 chromatin integrity during transcription prevent promiscuous deposition of CENP-A(Cnp1) in fission yeast. PLoS Genet 8: e1002985.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002985
-
-
Choi, E.S.1
Stralfors, A.2
Catania, S.3
Castillo, A.G.4
Svensson, J.P.5
Pidoux, A.L.6
Ekwall, K.7
Allshire, R.C.8
-
8
-
-
77952692464
-
PR-Set7-mediated monomethylation of histone H4 lysine 20 at specific ge-nomic regions induces transcriptional repression
-
Congdon LM, Houston SI, Veerappan CS, Spektor TM, Rice JC. 2010. PR-Set7-mediated monomethylation of histone H4 lysine 20 at specific ge-nomic regions induces transcriptional repression. J Cell Biochem 110: 609-619.
-
(2010)
J Cell Biochem
, vol.110
, pp. 609-619
-
-
Congdon, L.M.1
Houston, S.I.2
Veerappan, C.S.3
Spektor, T.M.4
Rice, J.C.5
-
9
-
-
84857117928
-
Histone exchange and histone modifications during transcription and aging
-
Das C, Tyler JK. 2012. Histone exchange and histone modifications during transcription and aging. Biochim Biophys Acta 1819: 332-342.
-
(2012)
Biochim Biophys Acta
, vol.1819
, pp. 332-342
-
-
Das, C.1
Tyler, J.K.2
-
10
-
-
80052277207
-
Progressive methylationof ageing histonesby Dot1 functionsas a timer
-
De VosD, Frederiks F, Terweij M, van Welsem T, Verzijlbergen KF, Iachina E, de Graaf EL, Altelaar AFM, Oudgenoeg G, Heck AJR, et al. 2011. Progressive methylationof ageing histonesby Dot1 functionsas a timer. EMBO Rep 12: 956-962.
-
(2011)
EMBO Rep
, vol.12
, pp. 956-962
-
-
De Vosd Frederiks, F.1
Terweij, M.2
Van Welsem, T.3
Verzijlbergen, K.F.4
Iachina, E.5
De Graaf, E.L.6
Afm, A.7
Oudgenoeg, G.8
Ajr, H.9
-
11
-
-
79957863741
-
Capturing the dynamic epigenome
-
Deal RB, Henikoff S. 2010. Capturing the dynamic epigenome. Genome Biol 11: 218.
-
(2010)
Genome Biol
, vol.11
, pp. 218
-
-
Deal, R.B.1
Henikoff, S.2
-
12
-
-
77952996319
-
Genome-wide kinetics of nucleo-some turnover determined by metabolic labeling of histones
-
Deal RB, Henikoff JG, Henikoff S. 2010. Genome-wide kinetics of nucleo-some turnover determined by metabolic labeling of histones. Science 328: 1161-1164.
-
(2010)
Science
, vol.328
, pp. 1161-1164
-
-
Deal, R.B.1
Henikoff, J.G.2
Henikoff, S.3
-
13
-
-
84893040276
-
Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast
-
DeGennaro CM, Alver BH, Marguerat S, Stepanova E, Davis CP, Bahler J, Park PJ, Winston F. 2013. Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast. Mol Cell Biol 33: 4779-4792.
-
(2013)
Mol Cell Biol
, vol.33
, pp. 4779-4792
-
-
Degennaro, C.M.1
Alver, B.H.2
Marguerat, S.3
Stepanova, E.4
Davis, C.P.5
Bahler, J.6
Park, P.J.7
Winston, F.8
-
14
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. 2007. Dynamics of replication-independent histone turnover in budding yeast. Science 315: 1405-1408.
-
(2007)
Science
, vol.315
, pp. 1405-1408
-
-
Dion, M.F.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Friedman, N.5
Rando, O.J.6
-
15
-
-
35048814992
-
Evidence that the localizationofthe elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae
-
Duina AA, Rufiange A, Bracey J, Hall J, Nourani A, Winston F. 2007. Evidence that the localizationofthe elongation factor Spt16 across transcribed genes is dependent upon histone H3 integrity in Saccharomyces cerevisiae. Genetics 177: 101-112.
-
(2007)
Genetics
, vol.177
, pp. 101-112
-
-
Duina, A.A.1
Rufiange, A.2
Bracey, J.3
Hall, J.4
Nourani, A.5
Winston, F.6
-
16
-
-
75149191422
-
Chromatin immunoprecipitation using microarrays
-
Durand-Dubief M, Ekwall K. 2009. Chromatin immunoprecipitation using microarrays. Methods Mol Biol 529: 279.
-
(2009)
Methods Mol Biol
, vol.529
, pp. 279
-
-
Durand-Dubief, M.1
Ekwall, K.2
-
17
-
-
77954957199
-
Topoisomerase Iregulates open chromatin and controls gene expression in vivo
-
Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K. 2010. Topoisomerase Iregulates open chromatin and controls gene expression in vivo. EMBO J 29: 2126-2134.
-
(2010)
EMBO J
, vol.29
, pp. 2126-2134
-
-
Durand-Dubief, M.1
Persson, J.2
Norman, U.3
Hartsuiker, E.4
Ekwall, K.5
-
18
-
-
84884795416
-
H4K20 methylation regulates quiescence and chromatin compaction
-
Evertts AG, Manning AL, Wang X, Dyson NJ, Garcia BA, Coller HA. 2013. H4K20 methylation regulates quiescence and chromatin compaction. Mol Biol Cell 24: 3025-3037.
-
(2013)
Mol Biol Cell
, vol.24
, pp. 3025-3037
-
-
Evertts, A.G.1
Manning, A.L.2
Wang, X.3
Dyson, N.J.4
Garcia, B.A.5
Coller, H.A.6
-
19
-
-
46149091721
-
H2B ubiquityla-tion plays a role in nucleosome dynamics during transcription elongation
-
Fleming AB, Kao CF, Hillyer C, Pikaart M, Osley MA. 2008. H2B ubiquityla-tion plays a role in nucleosome dynamics during transcription elongation. Mol Cell 31: 57-66.
-
(2008)
Mol Cell
, vol.31
, pp. 57-66
-
-
Fleming, A.B.1
Kao, C.F.2
Hillyer, C.3
Pikaart, M.4
Osley, M.A.5
-
20
-
-
77649099092
-
Distinct factors control his-tone variant H3.3 localization at specific genomic regions
-
Goldberg AD, Banaszynski LA, Noh KM, Lewis PW, Elsaesser SJ, Stadler S, Dewell S, Law M, Guo XY, Li X, et al. 2010. Distinct factors control his-tone variant H3.3 localization at specific genomic regions. Cell 140: 678-691.
-
(2010)
Cell
, vol.140
, pp. 678-691
-
-
Goldberg, A.D.1
Banaszynski, L.A.2
Noh, K.M.3
Lewis, P.W.4
Elsaesser, S.J.5
Stadler, S.6
Dewell, S.7
Law, M.8
Guo, X.Y.9
Li, X.10
-
21
-
-
29144531244
-
Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning
-
Guillemette B, Bataille AR, Gevry N, Adam M, Blanchette M, Robert F, GaudreauL. 2005. Variant histone H2A.Z is globally localized to the promoters of inactive yeast genes and regulates nucleosome positioning. PLoS Biol 3: 2100-2110.
-
(2005)
PLoS Biol
, vol.3
, pp. 2100-2110
-
-
Guillemette, B.1
Bataille, A.R.2
Gevry, N.3
Adam, M.4
Blanchette, M.5
Robert, F.6
Gaudreau, L.7
-
22
-
-
84879656010
-
H3.3-H4 tetramer splitting events feature cell-type specific enhancers
-
Huang C, Zhang ZQ, Xu M, Li YF, Li Z, Ma YT, Cai T, Zhu B. 2013. H3.3-H4 tetramer splitting events feature cell-type specific enhancers. PLoS Genet 9: e1003558.
-
(2013)
PLoS Genet
, vol.9
, pp. e1003558
-
-
Huang, C.1
Zhang, Z.Q.2
Xu, M.3
Li, Y.F.4
Li, Z.5
Ma, Y.T.6
Cai, T.7
Zhu, B.8
-
23
-
-
0033577908
-
A new inducible protein expression system in fission yeast based on the glucose-repressed inv1 promoter
-
Iacovoni JS, Russell P, Gaits F. 1999. A new inducible protein expression system in fission yeast based on the glucose-repressed inv1 promoter. Gene 232: 53-58.
-
(1999)
Gene
, vol.232
, pp. 53-58
-
-
Iacovoni, J.S.1
Russell, P.2
Gaits, F.3
-
24
-
-
33846663256
-
Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication
-
Jamai A, Imoberdorf RM, Strubin M. 2007. Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication. Mol Cell 25: 345-355.
-
(2007)
Mol Cell
, vol.25
, pp. 345-355
-
-
Jamai, A.1
Imoberdorf, R.M.2
Strubin, M.3
-
25
-
-
68349148027
-
Histone chaperone Spt16 promotes redeposition of the original H3-H4 histories evicted by elongating RNA polymerase
-
Jamai A, Puglisi A, Strubin M. 2009. Histone chaperone Spt16 promotes redeposition of the original H3-H4 histories evicted by elongating RNA polymerase. Mol Cell 35: 377-383.
-
(2009)
Mol Cell
, vol.35
, pp. 377-383
-
-
Jamai, A.1
Puglisi, A.2
Strubin, M.3
-
26
-
-
0035839136
-
Translating the histone code
-
Jenuwein T, Allis CD. 2001. Translating the histone code. Science 293: 1074-1080.
-
(2001)
Science
, vol.293
, pp. 1074-1080
-
-
Jenuwein, T.1
Allis, C.D.2
-
27
-
-
60349089645
-
Nucleosome positioning and gene regulation: Advances through genomics
-
Jiang CZ, Pugh BF. 2009. Nucleosome positioning and gene regulation: advances through genomics. Nat Rev Genet 10: 161-172.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 161-172
-
-
Jiang, C.Z.1
Pugh, B.F.2
-
28
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
Jin CY, Felsenfeld G. 2007. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 21: 1519-1529.
-
(2007)
Genes Dev
, vol.21
, pp. 1519-1529
-
-
Jin, C.Y.1
Felsenfeld, G.2
-
29
-
-
0041828953
-
Transcription elongation factors repress transcription initiation from cryptic sites
-
Kaplan CD, LapradeL, Winston F. 2003. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301: 1096-1099.
-
(2003)
Science
, vol.301
, pp. 1096-1099
-
-
Kaplan, C.D.1
Lapradel Winston, F.2
-
30
-
-
13844269327
-
PR-Set7-dependent methylation of histone H4 Lys 20 functions in repression of gene expression and is essential for mitosis
-
Karachentsev D, Sarma K, Reinberg D, Steward R. 2005. PR-Set7-dependent methylation of histone H4 Lys 20 functions in repression of gene expression and is essential for mitosis. Genes Dev 19: 431-435.
-
(2005)
Genes Dev
, vol.19
, pp. 431-435
-
-
Karachentsev, D.1
Sarma, K.2
Reinberg, D.3
Steward, R.4
-
31
-
-
35649017750
-
Histone chaperones regulate histone exchange during transcription
-
Kim HJ, Seol JH, Han JW, Youn HD, Cho EJ. 2007. Histone chaperones regulate histone exchange during transcription. EMBO J 26: 4467-4474.
-
(2007)
EMBO J
, vol.26
, pp. 4467-4474
-
-
Kim, H.J.1
Seol, J.H.2
Han, J.W.3
Youn, H.D.4
Cho, E.J.5
-
32
-
-
84886731038
-
Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3
-
Kraushaar DC, Jin WF, Maunakea A, Abraham B, Ha M, Zhao KJ. 2013. Genome-wide incorporation dynamics reveal distinct categories of turnover for the histone variant H3.3. Genome Biol 14: R121.
-
(2013)
Genome Biol
, vol.14
, pp. R121
-
-
Kraushaar, D.C.1
Jin, W.F.2
Maunakea, A.3
Abraham, B.4
Ha, M.5
Zhao, K.J.6
-
33
-
-
84859210032
-
Fast gapped-read alignment with Bowtie 2
-
Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods 9: 357-359.
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
34
-
-
3543023310
-
Evidence for nucleosome depletion at active regulatory regions genome-wide
-
Lee CK, Shibata Y, Rao B, Strahl BD, Lieb JD. 2004. Evidence for nucleosome depletion at active regulatory regions genome-wide. Nat Genet 36: 900-905.
-
(2004)
Nat Genet
, vol.36
, pp. 900-905
-
-
Lee, C.K.1
Shibata, Y.2
Rao, B.3
Strahl, B.D.4
Lieb, J.D.5
-
35
-
-
77954954200
-
PHF8 mediates his-tone H4 lysine 20 demethylation events involved in cell cycle progression
-
Liu W, Tanasa B, Tyurina OV, Zhou TY, Gassmann R, Liu WT, Ohgi KA, Benner C, Garcia-Bassets I, Aggarwal AK, et al. 2010. PHF8 mediates his-tone H4 lysine 20 demethylation events involved in cell cycle progression. Nature 466: 508-512.
-
(2010)
Nature
, vol.466
, pp. 508-512
-
-
Liu, W.1
Tanasa, B.2
Tyurina, O.V.3
Zhou, T.Y.4
Gassmann, R.5
Liu, W.T.6
Ohgi, K.A.7
Benner, C.8
Garcia-Bassets, I.9
Aggarwal, A.K.10
-
36
-
-
33749657892
-
PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state
-
Loyola A, Bonaldi T, Roche D, Imhof A, Almouzni G.2006. PTMs on H3 variants before chromatin assembly potentiate their final epigenetic state. Mol Cell 24: 309-316.
-
(2006)
Mol Cell
, vol.24
, pp. 309-316
-
-
Loyola, A.1
Bonaldi, T.2
Roche, D.3
Imhof, A.4
Almouzni, G.5
-
37
-
-
84868028972
-
Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells
-
Marguerat S, Schmidt A, Codlin S, Chen W, Aebersold R, Bahler J. 2012. Quantitative analysis of fission yeast transcriptomes and proteomes in proliferating and quiescent cells. Cell 151: 671-683.
-
(2012)
Cell
, vol.151
, pp. 671-683
-
-
Marguerat, S.1
Schmidt, A.2
Codlin, S.3
Chen, W.4
Aebersold, R.5
Bahler, J.6
-
38
-
-
54149091257
-
Metabolism and regulation of canonical histone mRNAs: Life without a poly(A) tail
-
Marzluff WF, Wagner EJ, Duronio RJ. 2008. Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat Rev Genet 9: 843-854.
-
(2008)
Nat Rev Genet
, vol.9
, pp. 843-854
-
-
Marzluff, W.F.1
Wagner, E.J.2
Duronio, R.J.3
-
39
-
-
84871998679
-
Spatiotemporal analysis of organelle and macromolecular complex inheritance
-
Menendez-Benito V, van Deventer SJ, Jimenez-Garcia V, Roy-Luzarraga M, van Leeuwen F, Neefjes J. 2013. Spatiotemporal analysis of organelle and macromolecular complex inheritance. Proc Natl Acad Sci 110: 175-180.
-
(2013)
Proc Natl Acad Sci
, vol.110
, pp. 175-180
-
-
Menendez-Benito, V.1
Van Deventer, S.J.2
Jimenez-Garcia, V.3
Roy-Luzarraga, M.4
Van Leeuwen, F.5
Neefjes, J.6
-
40
-
-
64749106929
-
Monomethylation of histone H4-lysine 20 is involved in chromosome structure and stability and is essential for mouse development
-
Oda H, Okamoto I, Murphy N, Chu JH, Price SM, Shen MM, Torres-Padilla ME, Heard E, Reinberg D. 2009. Monomethylation of histone H4-lysine 20 is involved in chromosome structure and stability and is essential for mouse development. Mol Cell Biol 29: 2278-2295.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 2278-2295
-
-
Oda, H.1
Okamoto, I.2
Murphy, N.3
Chu, J.H.4
Price, S.M.5
Shen, M.M.6
Torres-Padilla, M.E.7
Heard, E.8
Reinberg, D.9
-
42
-
-
33646691283
-
Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II
-
Pavri R, Zhu B, Li GH, Trojer P, Mandal S, Shilatifard A, Reinberg D. 2006. Histone H2B monoubiquitination functions cooperatively with FACT to regulate elongation by RNA polymerase II. Cell 125: 703-717.
-
(2006)
Cell
, vol.125
, pp. 703-717
-
-
Pavri, R.1
Zhu, B.2
Li, G.H.3
Trojer, P.4
Mandal, S.5
Shilatifard, A.6
Reinberg, D.7
-
43
-
-
37549014575
-
Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle
-
Pesavento JJ, Yang H, Kelleher NL, Mizzen CA. 2008. Certain and progressive methylation of histone H4 at lysine 20 during the cell cycle. Mol Cell Biol 28: 468-486.
-
(2008)
Mol Cell Biol
, vol.28
, pp. 468-486
-
-
Pesavento, J.J.1
Yang, H.2
Kelleher, N.L.3
Mizzen, C.A.4
-
44
-
-
77954957901
-
Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofa-cial development
-
Qi HH, Sarkissian M, Hu GQ, Wang ZB, Bhattacharjee A, Gordon DB, Gonzales M, Lan F, Ongusaha PP, Huarte M, et al. 2010. Histone H4K20/H3K9 demethylase PHF8 regulates zebrafish brain and craniofa-cial development. Nature 466: 503-507.
-
(2010)
Nature
, vol.466
, pp. 503-507
-
-
Qi, H.H.1
Sarkissian, M.2
Hu, G.Q.3
Wang, Z.B.4
Bhattacharjee, A.5
Gordon, D.B.6
Gonzales, M.7
Lan, F.8
Ongusaha, P.P.9
Huarte, M.10
-
45
-
-
84863304598
-
-
R Core Team. R Foundation for Statistical Computing, Vienna, Austria
-
R Core Team. 2014. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. http://www.R-project.org/.
-
(2014)
R: A Language and Environment for Statistical Computing
-
-
-
46
-
-
76949093375
-
Nucleosome positioning: How is it established, and why does it matter?
-
Radman-Livaja M, Rando OJ. 2010. Nucleosome positioning: how is it established, and why does it matter? Dev Biol 339: 258-266.
-
(2010)
Dev Biol
, vol.339
, pp. 258-266
-
-
Radman-Livaja, M.1
Rando, O.J.2
-
47
-
-
84864626931
-
′ ends of long genes in yeast
-
′ ends of long genes in yeast. PLoS Genet 8: e1002811.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002811
-
-
Radman-Livaja, M.1
Quan, T.K.2
Valenzuela, L.3
Armstrong, J.A.4
Van Welsem, T.5
Kim, T.6
Lee, L.J.7
Buratowski, S.8
Van Leeuwen, F.9
Rando, O.J.10
-
48
-
-
33748994704
-
Stochastic mRNA synthesis in mammalian cells
-
Raj A, Peskin CS, Tranchina D, Vargas DY, Tyagi S. 2006. Stochastic mRNA synthesis in mammalian cells. PLoS Biol 4: 1707-1719.
-
(2006)
PLoS Biol
, vol.4
, pp. 1707-1719
-
-
Raj, A.1
Peskin, C.S.2
Tranchina, D.3
Vargas, D.Y.4
Tyagi, S.5
-
49
-
-
84923924611
-
Asymmetric nucleosomes flank promoters in the budding yeast genome
-
Ramachandran S, Zenter GE, Henikoff S. 2015. Asymmetric nucleosomes flank promoters in the budding yeast genome. Genome Res 25: 381-390.
-
(2015)
Genome Res
, vol.25
, pp. 381-390
-
-
Ramachandran, S.1
Zenter, G.E.2
Henikoff, S.3
-
50
-
-
67650711140
-
Genome-wide views of chromatin structure
-
Rando OJ, Chang HY. 2009. Genome-wide views of chromatin structure. Annu Rev Biochem 78: 245-271.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 245-271
-
-
Rando, O.J.1
Chang, H.Y.2
-
51
-
-
33746856074
-
De FACTo nucleosome dynamics
-
Reinberg D, Sims RJ. 2006. de FACTo nucleosome dynamics. J Biol Chem 281: 23297-23301.
-
(2006)
J Biol Chem
, vol.281
, pp. 23297-23301
-
-
Reinberg, D.1
Sims, R.J.2
-
52
-
-
83255164884
-
Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution
-
Rhee HS, Pugh BF. 2011. Comprehensive genome-wide protein-DNA interactions detected at single-nucleotide resolution. Cell 147: 1408-1419.
-
(2011)
Cell
, vol.147
, pp. 1408-1419
-
-
Rhee, H.S.1
Pugh, B.F.2
-
53
-
-
84923596623
-
Subnucleosomal structures and nucleosome asymmetry across a genome
-
Rhee HS, Bataille AR, Zhang L, Pugh BF. 2014. Subnucleosomal structures and nucleosome asymmetry across a genome. Cell 159: 1377-1388.
-
(2014)
Cell
, vol.159
, pp. 1377-1388
-
-
Rhee, H.S.1
Bataille, A.R.2
Zhang, L.3
Pugh, B.F.4
-
54
-
-
34547277498
-
Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3K56 acetylation and Asf1
-
Rufiange A, Jacques PE, Bhat W, Robert F, Nourani A. 2007. Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3K56 acetylation and Asf1. Mol Cell 27: 393-405.
-
(2007)
Mol Cell
, vol.27
, pp. 393-405
-
-
Rufiange, A.1
Jacques, P.E.2
Bhat, W.3
Robert, F.4
Nourani, A.5
-
55
-
-
3543042493
-
Periodic gene expression program of the fission yeast cell cycle
-
Rustici G, Mata J, Kivinen K, Lio P, Penkett CJ, Burns G, Hayles J, Brazma A, Nurse P, Bahler J. 2004. Periodic gene expression program of the fission yeast cell cycle. Nat Genet 36: 809-817.
-
(2004)
Nat Genet
, vol.36
, pp. 809-817
-
-
Rustici, G.1
Mata, J.2
Kivinen, K.3
Lio, P.4
Penkett, C.J.5
Burns, G.6
Hayles, J.7
Brazma, A.8
Nurse, P.9
Bahler, J.10
-
56
-
-
80052313379
-
Podbat: A novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis
-
Sadeghi L, Bonilla C, Stralfors A, Ekwall K, Svensson JP. 2011. Podbat: a novel genomic tool reveals Swr1-independent H2A.Z incorporation at gene coding sequences through epigenetic meta-analysis. PLoS Comput Biol 7: e1002163.
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002163
-
-
Sadeghi, L.1
Bonilla, C.2
Stralfors, A.3
Ekwall, K.4
Svensson, J.P.5
-
57
-
-
84895879913
-
Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity
-
Sadeghi L, Siggens L, Svensson JP, Ekwall K. 2014. Centromeric histone H2B monoubiquitination promotes noncoding transcription and chromatin integrity. Nat Struct Mol Biol 20: 236-243.
-
(2014)
Nat Struct Mol Biol
, vol.20
, pp. 236-243
-
-
Sadeghi, L.1
Siggens, L.2
Svensson, J.P.3
Ekwall, K.4
-
58
-
-
33846460473
-
Aberrant monomethylation of histoneH4 ly-sine 20 activates the DNA damage checkpoint in Drosophila mela-nogaster
-
Sakaguchi A, Steward R. 2007. Aberrant monomethylation of histoneH4 ly-sine 20 activates the DNA damage checkpoint in Drosophila mela-nogaster. J Cell Biol 176: 155-162.
-
(2007)
J Cell Biol
, vol.176
, pp. 155-162
-
-
Sakaguchi, A.1
Steward, R.2
-
59
-
-
8844248619
-
Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage
-
Sanders SL, Portoso M, Mata J, Bahler J, Allshire RC, Kouzarides T. 2004. Methylation of histone H4 lysine 20 controls recruitment of Crb2 to sites of DNA damage. Cell 119: 603-614.
-
(2004)
Cell
, vol.119
, pp. 603-614
-
-
Sanders, S.L.1
Portoso, M.2
Mata, J.3
Bahler, J.4
Allshire, R.C.5
Kouzarides, T.6
-
60
-
-
0042830962
-
Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo
-
Saunders A, Werner J, Andrulis ED, NakayamaT, HiroseS, ReinbergD, Lis JT. 2003. Tracking FACT and the RNA polymerase II elongation complex through chromatin in vivo. Science 301: 1094-1096.
-
(2003)
Science
, vol.301
, pp. 1094-1096
-
-
Saunders, A.1
Werner, J.2
Andrulis, E.D.3
Nakayama, T.4
Hirose, S.5
Reinberg, D.6
Lis, J.T.7
-
61
-
-
69849087056
-
Establishment of histone modifications after chromatin assembly
-
Scharf AND, Barth TK, Imhof A. 2009a. Establishment of histone modifications after chromatin assembly. Nucleic Acids Res 37: 5032-5040.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 5032-5040
-
-
Scharf, A.N.D.1
Barth, T.K.2
Imhof, A.3
-
62
-
-
58149464710
-
Monomethylationof lysine 20 on histone H4 facilitates chromatin maturation
-
Scharf AND, Meier K, Seitz V, Kremmer E, Brehm A, Imhof A. 2009b. Monomethylationof lysine 20 on histone H4 facilitates chromatin maturation. Mol Cell Biol 29: 57-67.
-
(2009)
Mol Cell Biol
, vol.29
, pp. 57-67
-
-
Scharf1
Meier, K.2
Seitz, V.3
Kremmer, E.4
Brehm, A.5
Imhof, A.6
-
63
-
-
8644287437
-
Evidence for eviction and rapid deposition of histories upon transcriptional elongation by RNA polymerase II
-
Schwabish MA, Struhl K. 2004. Evidence for eviction and rapid deposition of histories upon transcriptional elongation by RNA polymerase II. Mol Cell Biol 24: 10111-10117.
-
(2004)
Mol Cell Biol
, vol.24
, pp. 10111-10117
-
-
Schwabish, M.A.1
Struhl, K.2
-
64
-
-
84890980181
-
Development of an Illumina-based ChIP-exonuclease method provides insight into FoxA1-DNA binding properties
-
Serandour AA, Brown GD, Cohen JD, Carroll JS. 2013. Development of an Illumina-based ChIP-exonuclease method provides insight into FoxA1-DNA binding properties. Genome Biol 14: R147.
-
(2013)
Genome Biol
, vol.14
, pp. R147
-
-
Serandour, A.A.1
Brown, G.D.2
Cohen, J.D.3
Carroll, J.S.4
-
65
-
-
84921494761
-
Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence
-
Sideri T, Rallis C, Bitton DA, Lages BM, Suo F, Rodriguez-Lopez M, Du LL, Bähler J. 2014. Parallel profiling of fission yeast deletion mutants for proliferation and for lifespan during long-term quiescence. G3 (Bethesda) 5: 145-155.
-
(2014)
G3 (Bethesda)
, vol.5
, pp. 145-155
-
-
Sideri, T.1
Rallis, C.2
Bitton, D.A.3
Lages, B.M.4
Suo, F.5
Rodriguez-Lopez, M.6
Du, L.L.7
Bähler, J.8
-
66
-
-
33744963540
-
A trans-tail histone code defined by monomethylated H4 Lys-20 and H3 Lys-9 demarcates distinct regions of silent chromatin
-
Sims JK, Houston SI, Magazinnik T, Rice JC. 2006. A trans-tail histone code defined by monomethylated H4 Lys-20 and H3 Lys-9 demarcates distinct regions of silent chromatin. J Biol Chem 281: 12760-12766.
-
(2006)
J Biol Chem
, vol.281
, pp. 12760-12766
-
-
Sims, J.K.1
Houston, S.I.2
Magazinnik, T.3
Rice, J.C.4
-
67
-
-
84899620204
-
The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1
-
Skene PJ, Hernandez AE, Groudine M, Henikoff S. 2014. The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1. Elife 3: e02042.
-
(2014)
Elife
, vol.3
, pp. e02042
-
-
Skene, P.J.1
Hernandez, A.E.2
Groudine, M.3
Henikoff, S.4
-
68
-
-
79953741267
-
The FUN30 chromatin remodeler, Fft3, protects centromeric and subtelomeric domains from euchromatin formation
-
StralforsA, WalfridssonJ, BhuiyanH, EkwallK.2011. The FUN30 chromatin remodeler, Fft3, protects centromeric and subtelomeric domains from euchromatin formation. PLoS Genet 7: e1001334.
-
(2011)
PLoS Genet
, vol.7
, pp. e1001334
-
-
Stralfors, A.1
Walfridsson, J.2
Bhuiyan, H.3
Ekwall, K.4
-
69
-
-
0742304304
-
Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis
-
Tagami H, Ray-Gallet D, Almouzni G, Nakatani Y. 2004. Histone H3.1 and H3.3 complexes mediate nucleosome assembly pathways dependent or independent of DNA synthesis. Cell 116: 51-61.
-
(2004)
Cell
, vol.116
, pp. 51-61
-
-
Tagami, H.1
Ray-Gallet, D.2
Almouzni, G.3
Nakatani, Y.4
-
70
-
-
34147108606
-
Ubiquitylation of histone H2B controls RNA polymerase II transcription elongation independently of histone H3 methylation
-
Tanny JC, Erdjument-Bromage H, Tempst P, Allis CD. 2007. Ubiquitylation of histone H2B controls RNA polymerase II transcription elongation independently of histone H3 methylation. Genes Dev 21: 835-847.
-
(2007)
Genes Dev
, vol.21
, pp. 835-847
-
-
Tanny, J.C.1
Erdjument-Bromage, H.2
Tempst, P.3
Allis, C.D.4
-
71
-
-
84883426331
-
Recombination-induced tag exchange (RITE) cassette series to monitor protein dynamics in Saccharomyces cerevisiae
-
Terweij M, van Welsem T, van Deventer S, Verzijlbergen KF, Menendez-Benito V, Ontoso D, San-Segundo P, Neefjes J, van Leeuwen F. 2013. Recombination-induced tag exchange (RITE) cassette series to monitor protein dynamics in Saccharomyces cerevisiae. G3 (Bethesda) 3: 1261-1272.
-
(2013)
G3 (Bethesda)
, vol.3
, pp. 1261-1272
-
-
Terweij, M.1
Van Welsem, T.2
Van Deventer, S.3
Verzijlbergen, K.F.4
Menendez-Benito, V.5
Ontoso, D.6
San-Segundo, P.7
Neefjes, J.8
Van Leeuwen, F.9
-
72
-
-
76249091039
-
Recombination-induced tag exchange to track old and new proteins
-
Verzijlbergen KF, Menendez-Benito V, van Welsem T, van Deventer SJ, Lindstrom DL, Ovaa H, Neefjes J, Gottschling DE, van Leeuwen F. 2010. Recombination-induced tag exchange to track old and new proteins. Proc Natl Acad Sci 107: 64-68.
-
(2010)
Proc Natl Acad Sci
, vol.107
, pp. 64-68
-
-
Verzijlbergen, K.F.1
Menendez-Benito, V.2
Van Welsem, T.3
Van Deventer, S.J.4
Lindstrom, D.L.5
Ovaa, H.6
Neefjes, J.7
Gottschling, D.E.8
Van Leeuwen, F.9
-
73
-
-
69949099988
-
Degrees make all the difference the multifunctional-ity of histone H4 lysine 20 methylation
-
Wang Y, Jia ST. 2009. Degrees make all the difference The multifunctional-ity of histone H4 lysine 20 methylation. Epigenetics 4: 273-276.
-
(2009)
Epigenetics
, vol.4
, pp. 273-276
-
-
Wang, Y.1
Jia, S.T.2
-
74
-
-
60549108739
-
Regulation of Set9-mediated H4K20 methylation by a PWWP domain protein
-
Wang Y, Reddy B, Thompson J, Wang HB, Noma K, Yates JR, Jia ST. 2009. Regulation of Set9-mediated H4K20 methylation by a PWWP domain protein. Mol Cell 33: 428-437.
-
(2009)
Mol Cell
, vol.33
, pp. 428-437
-
-
Wang, Y.1
Reddy, B.2
Thompson, J.3
Wang, H.B.4
Noma, K.5
Yates, J.R.6
Jia, S.T.7
-
75
-
-
84884234697
-
SWR-C and INO80 chromatin remodelers recognize nucleosome-free regions near +1 nucleosomes
-
Yen KY, Vinayachandran V, Pugh BF. 2013. SWR-C and INO80 chromatin remodelers recognize nucleosome-free regions near +1 nucleosomes. Cell 154: 1246-1256.
-
(2013)
Cell
, vol.154
, pp. 1246-1256
-
-
Yen, K.Y.1
Vinayachandran, V.2
Pugh, B.F.3
-
77
-
-
26844489856
-
Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
-
Zhang HY, Roberts DN, Cairns BR. 2005. Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123: 219-231.
-
(2005)
Cell
, vol.123
, pp. 219-231
-
-
Zhang, H.Y.1
Roberts, D.N.2
Cairns, B.R.3
|