-
1
-
-
68149150830
-
H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions
-
10.1038/ng.409, 3125718, 19633671
-
Jin C, Zang C, Wei G, Cui K, Peng W, Zhao K, Felsenfeld G. H3.3/H2A.Z double variant-containing nucleosomes mark 'nucleosome-free regions' of active promoters and other regulatory regions. Nat Genet 2009, 41:941-945. 10.1038/ng.409, 3125718, 19633671.
-
(2009)
Nat Genet
, vol.41
, pp. 941-945
-
-
Jin, C.1
Zang, C.2
Wei, G.3
Cui, K.4
Peng, W.5
Zhao, K.6
Felsenfeld, G.7
-
2
-
-
34250745886
-
Nucleosome stability mediated by histone variants H3.3 and H2A.Z
-
10.1101/gad.1547707, 1891429, 17575053
-
Jin C, Felsenfeld G. Nucleosome stability mediated by histone variants H3.3 and H2A.Z. Genes Dev 2007, 21:1519-1529. 10.1101/gad.1547707, 1891429, 17575053.
-
(2007)
Genes Dev
, vol.21
, pp. 1519-1529
-
-
Jin, C.1
Felsenfeld, G.2
-
3
-
-
37749051130
-
Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription
-
10.1038/ncb1674, 18066050
-
Ng RK, Gurdon JB. Epigenetic memory of an active gene state depends on histone H3.3 incorporation into chromatin in the absence of transcription. Nat Cell Biol 2008, 10:102-109. 10.1038/ncb1674, 18066050.
-
(2008)
Nat Cell Biol
, vol.10
, pp. 102-109
-
-
Ng, R.K.1
Gurdon, J.B.2
-
4
-
-
84873581550
-
H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation
-
10.1016/j.stem.2012.11.003, 23260488
-
Hu G, Cui K, Northrup D, Liu C, Wang C, Tang Q, Ge K, Levens D, Crane-Robinson C, Zhao K. H2A.Z facilitates access of active and repressive complexes to chromatin in embryonic stem cell self-renewal and differentiation. Cell Stem Cell 2013, 12:180-192. 10.1016/j.stem.2012.11.003, 23260488.
-
(2013)
Cell Stem Cell
, vol.12
, pp. 180-192
-
-
Hu, G.1
Cui, K.2
Northrup, D.3
Liu, C.4
Wang, C.5
Tang, Q.6
Ge, K.7
Levens, D.8
Crane-Robinson, C.9
Zhao, K.10
-
5
-
-
2942746179
-
Histone variants, nucleosome assembly and epigenetic inheritance
-
10.1016/j.tig.2004.05.004, 15219397
-
Henikoff S, Furuyama T, Ahmad K. Histone variants, nucleosome assembly and epigenetic inheritance. Trends Genet 2004, 20:320-326. 10.1016/j.tig.2004.05.004, 15219397.
-
(2004)
Trends Genet
, vol.20
, pp. 320-326
-
-
Henikoff, S.1
Furuyama, T.2
Ahmad, K.3
-
6
-
-
77952241644
-
New functions for an old variant: no substitute for histone H3.3
-
10.1016/j.gde.2010.01.003, 2860041, 20153629
-
Elsaesser SJ, Goldberg AD, Allis CD. New functions for an old variant: no substitute for histone H3.3. Curr Opin Genet Dev 2010, 20:110-117. 10.1016/j.gde.2010.01.003, 2860041, 20153629.
-
(2010)
Curr Opin Genet Dev
, vol.20
, pp. 110-117
-
-
Elsaesser, S.J.1
Goldberg, A.D.2
Allis, C.D.3
-
7
-
-
0036299092
-
The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly
-
10.1016/S1097-2765(02)00542-7, 12086617
-
Ahmad K, Henikoff S. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly. Mol Cell 2002, 9:1191-1200. 10.1016/S1097-2765(02)00542-7, 12086617.
-
(2002)
Mol Cell
, vol.9
, pp. 1191-1200
-
-
Ahmad, K.1
Henikoff, S.2
-
8
-
-
0036284794
-
HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis
-
10.1016/S1097-2765(02)00526-9, 12049744
-
Ray-Gallet D, Quivy JP, Scamps C, Martini EM, Lipinski M, Almouzni G. HIRA is critical for a nucleosome assembly pathway independent of DNA synthesis. Mol Cell 2002, 9:1091-1100. 10.1016/S1097-2765(02)00526-9, 12049744.
-
(2002)
Mol Cell
, vol.9
, pp. 1091-1100
-
-
Ray-Gallet, D.1
Quivy, J.P.2
Scamps, C.3
Martini, E.M.4
Lipinski, M.5
Almouzni, G.6
-
9
-
-
77649099092
-
Distinct factors control histone variant H3.3 localization at specific genomic regions
-
10.1016/j.cell.2010.01.003, 2885838, 20211137
-
Goldberg AD, Banaszynski LA, Noh KM, Lewis PW, Elsaesser SJ, Stadler S, Dewell S, Law M, Guo X, Li X, Wen D, Chapgier A, DeKelver RC, Miller JC, Lee YL, Boydston EA, Holmes MC, Gregory PD, Greally JM, Rafii S, Yang C, Scambler PJ, Garrick D, Gibbons RJ, Higgs DR, Cristea IM, Urnov FD, Zheng D, Allis CD. Distinct factors control histone variant H3.3 localization at specific genomic regions. Cell 2010, 140:678-691. 10.1016/j.cell.2010.01.003, 2885838, 20211137.
-
(2010)
Cell
, vol.140
, pp. 678-691
-
-
Goldberg, A.D.1
Banaszynski, L.A.2
Noh, K.M.3
Lewis, P.W.4
Elsaesser, S.J.5
Stadler, S.6
Dewell, S.7
Law, M.8
Guo, X.9
Li, X.10
Wen, D.11
Chapgier, A.12
DeKelver, R.C.13
Miller, J.C.14
Lee, Y.L.15
Boydston, E.A.16
Holmes, M.C.17
Gregory, P.D.18
Greally, J.M.19
Rafii, S.20
Yang, C.21
Scambler, P.J.22
Garrick, D.23
Gibbons, R.J.24
Higgs, D.R.25
Cristea, I.M.26
Urnov, F.D.27
Zheng, D.28
Allis, C.D.29
more..
-
10
-
-
77649262618
-
ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells
-
10.1101/gr.101477.109, 2840985, 20110566
-
Wong LH, McGhie JD, Sim M, Anderson MA, Ahn S, Hannan RD, George AJ, Morgan KA, Mann JR, Choo KH. ATRX interacts with H3.3 in maintaining telomere structural integrity in pluripotent embryonic stem cells. Genome Res 2010, 20:351-360. 10.1101/gr.101477.109, 2840985, 20110566.
-
(2010)
Genome Res
, vol.20
, pp. 351-360
-
-
Wong, L.H.1
McGhie, J.D.2
Sim, M.3
Anderson, M.A.4
Ahn, S.5
Hannan, R.D.6
George, A.J.7
Morgan, K.A.8
Mann, J.R.9
Choo, K.H.10
-
11
-
-
77956282773
-
Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres
-
10.1073/pnas.1008850107, 2922592, 20651253
-
Lewis PW, Elsaesser SJ, Noh KM, Stadler SC, Allis CD. Daxx is an H3.3-specific histone chaperone and cooperates with ATRX in replication-independent chromatin assembly at telomeres. Proc Natl Acad Sci U S A 2010, 107:14075-14080. 10.1073/pnas.1008850107, 2922592, 20651253.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14075-14080
-
-
Lewis, P.W.1
Elsaesser, S.J.2
Noh, K.M.3
Stadler, S.C.4
Allis, C.D.5
-
12
-
-
84863088107
-
A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus
-
10.1016/j.celrep.2012.05.006, 22813747
-
Szenker E, Lacoste N, Almouzni G. A developmental requirement for HIRA-dependent H3.3 deposition revealed at gastrulation in Xenopus. Cell Rep 2012, 1:730-740. 10.1016/j.celrep.2012.05.006, 22813747.
-
(2012)
Cell Rep
, vol.1
, pp. 730-740
-
-
Szenker, E.1
Lacoste, N.2
Almouzni, G.3
-
13
-
-
33644853355
-
Expression patterns and post-translational modifications associated with mammalian histone H3 variants
-
10.1074/jbc.M509266200, 16267050
-
Hake SB, Garcia BA, Duncan EM, Kauer M, Dellaire G, Shabanowitz J, Bazett-Jones DP, Allis CD, Hunt DF. Expression patterns and post-translational modifications associated with mammalian histone H3 variants. J Biol Chem 2006, 281:559-568. 10.1074/jbc.M509266200, 16267050.
-
(2006)
J Biol Chem
, vol.281
, pp. 559-568
-
-
Hake, S.B.1
Garcia, B.A.2
Duncan, E.M.3
Kauer, M.4
Dellaire, G.5
Shabanowitz, J.6
Bazett-Jones, D.P.7
Allis, C.D.8
Hunt, D.F.9
-
14
-
-
17044394787
-
Transcriptional activation triggers deposition and removal of the histone variant H3.3
-
10.1101/gad.1259805, 1074318, 15774717
-
Schwartz BE, Ahmad K. Transcriptional activation triggers deposition and removal of the histone variant H3.3. Genes Dev 2005, 19:804-814. 10.1101/gad.1259805, 1074318, 15774717.
-
(2005)
Genes Dev
, vol.19
, pp. 804-814
-
-
Schwartz, B.E.1
Ahmad, K.2
-
15
-
-
27144510368
-
Genome-scale profiling of histone H3.3 replacement patterns
-
10.1038/ng1637, 16155569
-
Mito Y, Henikoff JG, Henikoff S. Genome-scale profiling of histone H3.3 replacement patterns. Nat Genet 2005, 37:1090-1097. 10.1038/ng1637, 16155569.
-
(2005)
Nat Genet
, vol.37
, pp. 1090-1097
-
-
Mito, Y.1
Henikoff, J.G.2
Henikoff, S.3
-
16
-
-
66449111160
-
Inducible deposition of the histone variant H3.3 in interferon-stimulated genes
-
10.1074/jbc.M805651200, 2673290, 19244243
-
Tamura T, Smith M, Kanno T, Dasenbrock H, Nishiyama A, Ozato K. Inducible deposition of the histone variant H3.3 in interferon-stimulated genes. J Biol Chem 2009, 284:12217-12225. 10.1074/jbc.M805651200, 2673290, 19244243.
-
(2009)
J Biol Chem
, vol.284
, pp. 12217-12225
-
-
Tamura, T.1
Smith, M.2
Kanno, T.3
Dasenbrock, H.4
Nishiyama, A.5
Ozato, K.6
-
17
-
-
84859467840
-
Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana
-
10.1073/pnas.1203145109, 3325649, 22431625
-
Stroud H, Otero S, Desvoyes B, Ramirez-Parra E, Jacobsen SE, Gutierrez C. Genome-wide analysis of histone H3.1 and H3.3 variants in Arabidopsis thaliana. Proc Natl Acad Sci U S A 2012, 109:5370-5375. 10.1073/pnas.1203145109, 3325649, 22431625.
-
(2012)
Proc Natl Acad Sci U S A
, vol.109
, pp. 5370-5375
-
-
Stroud, H.1
Otero, S.2
Desvoyes, B.3
Ramirez-Parra, E.4
Jacobsen, S.E.5
Gutierrez, C.6
-
18
-
-
77957883572
-
Gene regulation by nucleosome positioning
-
10.1016/j.tig.2010.08.003, 20832136
-
Bai L, Morozov AV. Gene regulation by nucleosome positioning. Trends Genet 2010, 26:476-483. 10.1016/j.tig.2010.08.003, 20832136.
-
(2010)
Trends Genet
, vol.26
, pp. 476-483
-
-
Bai, L.1
Morozov, A.V.2
-
19
-
-
0031106575
-
Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast
-
10.1016/S0968-0004(97)01001-3, 9066259
-
Svaren J, Horz W. Transcription factors vs nucleosomes: regulation of the PHO5 promoter in yeast. Trends Biochem Sci 1997, 22:93-97. 10.1016/S0968-0004(97)01001-3, 9066259.
-
(1997)
Trends Biochem Sci
, vol.22
, pp. 93-97
-
-
Svaren, J.1
Horz, W.2
-
20
-
-
39749145198
-
Dynamic regulation of nucleosome positioning in the human genome
-
10.1016/j.cell.2008.02.022, 18329373
-
Schones DE, Cui K, Cuddapah S, Roh TY, Barski A, Wang Z, Wei G, Zhao K. Dynamic regulation of nucleosome positioning in the human genome. Cell 2008, 132:887-898. 10.1016/j.cell.2008.02.022, 18329373.
-
(2008)
Cell
, vol.132
, pp. 887-898
-
-
Schones, D.E.1
Cui, K.2
Cuddapah, S.3
Roh, T.Y.4
Barski, A.5
Wang, Z.6
Wei, G.7
Zhao, K.8
-
21
-
-
84862834099
-
SWI/SNF-mediated chromatin remodeling induces Z-DNA formation on a nucleosome
-
10.1186/2045-3701-2-3, 3293710, 22264354
-
Mulholland N, Xu Y, Sugiyama H, Zhao K. SWI/SNF-mediated chromatin remodeling induces Z-DNA formation on a nucleosome. Cell Biosci 2012, 2:3. 10.1186/2045-3701-2-3, 3293710, 22264354.
-
(2012)
Cell Biosci
, vol.2
, pp. 3
-
-
Mulholland, N.1
Xu, Y.2
Sugiyama, H.3
Zhao, K.4
-
22
-
-
0032504102
-
Human SWI/SNF interconverts a nucleosome between its base state and a stable remodeled state
-
10.1016/S0092-8674(00)81217-9, 9674423
-
Schnitzler G, Sif S, Kingston RE. Human SWI/SNF interconverts a nucleosome between its base state and a stable remodeled state. Cell 1998, 94:17-27. 10.1016/S0092-8674(00)81217-9, 9674423.
-
(1998)
Cell
, vol.94
, pp. 17-27
-
-
Schnitzler, G.1
Sif, S.2
Kingston, R.E.3
-
23
-
-
2942574467
-
Removal of promoter nucleosomes by disassembly rather than sliding in vivo
-
10.1016/j.molcel.2004.05.013, 15175161
-
Boeger H, Griesenbeck J, Strattan JS, Kornberg RD. Removal of promoter nucleosomes by disassembly rather than sliding in vivo. Mol Cell 2004, 14:667-673. 10.1016/j.molcel.2004.05.013, 15175161.
-
(2004)
Mol Cell
, vol.14
, pp. 667-673
-
-
Boeger, H.1
Griesenbeck, J.2
Strattan, J.S.3
Kornberg, R.D.4
-
24
-
-
84875196326
-
Determinants of nucleosome positioning
-
10.1038/nsmb.2506, 3740156, 23463311
-
Struhl K, Segal E. Determinants of nucleosome positioning. Nat Struct Mol Biol 2013, 20:267-273. 10.1038/nsmb.2506, 3740156, 23463311.
-
(2013)
Nat Struct Mol Biol
, vol.20
, pp. 267-273
-
-
Struhl, K.1
Segal, E.2
-
25
-
-
33644856138
-
Regulation of nucleosome stability as a mediator of chromatin function
-
10.1016/j.gde.2006.02.003, 16503136
-
Giresi PG, Gupta M, Lieb JD. Regulation of nucleosome stability as a mediator of chromatin function. Curr Opin Genet Dev 2006, 16:171-176. 10.1016/j.gde.2006.02.003, 16503136.
-
(2006)
Curr Opin Genet Dev
, vol.16
, pp. 171-176
-
-
Giresi, P.G.1
Gupta, M.2
Lieb, J.D.3
-
26
-
-
33947137710
-
Dynamics of replication-independent histone turnover in budding yeast
-
10.1126/science.1134053, 17347438
-
Dion MF, Kaplan T, Kim M, Buratowski S, Friedman N, Rando OJ. Dynamics of replication-independent histone turnover in budding yeast. Science 2007, 315:1405-1408. 10.1126/science.1134053, 17347438.
-
(2007)
Science
, vol.315
, pp. 1405-1408
-
-
Dion, M.F.1
Kaplan, T.2
Kim, M.3
Buratowski, S.4
Friedman, N.5
Rando, O.J.6
-
27
-
-
33846663256
-
Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication
-
10.1016/j.molcel.2007.01.019, 17289583
-
Jamai A, Imoberdorf RM, Strubin M. Continuous histone H2B and transcription-dependent histone H3 exchange in yeast cells outside of replication. Mol Cell 2007, 25:345-355. 10.1016/j.molcel.2007.01.019, 17289583.
-
(2007)
Mol Cell
, vol.25
, pp. 345-355
-
-
Jamai, A.1
Imoberdorf, R.M.2
Strubin, M.3
-
28
-
-
34547277498
-
Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1
-
10.1016/j.molcel.2007.07.011, 17679090
-
Rufiange A, Jacques PE, Bhat W, Robert F, Nourani A. Genome-wide replication-independent histone H3 exchange occurs predominantly at promoters and implicates H3 K56 acetylation and Asf1. Mol Cell 2007, 27:393-405. 10.1016/j.molcel.2007.07.011, 17679090.
-
(2007)
Mol Cell
, vol.27
, pp. 393-405
-
-
Rufiange, A.1
Jacques, P.E.2
Bhat, W.3
Robert, F.4
Nourani, A.5
-
29
-
-
79957863741
-
Capturing the dynamic epigenome
-
10.1186/gb-2010-11-10-218, 3218653, 20959022
-
Deal RB, Henikoff S. Capturing the dynamic epigenome. Genome Biol 2010, 11:218. 10.1186/gb-2010-11-10-218, 3218653, 20959022.
-
(2010)
Genome Biol
, vol.11
, pp. 218
-
-
Deal, R.B.1
Henikoff, S.2
-
30
-
-
77952996319
-
Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
-
10.1126/science.1186777, 2879085, 20508129
-
Deal RB, Henikoff JG, Henikoff S. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 2010, 328:1161-1164. 10.1126/science.1186777, 2879085, 20508129.
-
(2010)
Science
, vol.328
, pp. 1161-1164
-
-
Deal, R.B.1
Henikoff, J.G.2
Henikoff, S.3
-
31
-
-
33947274529
-
Propagation of centromeric chromatin requires exit from mitosis
-
10.1083/jcb.200701066, 2064054, 17339380
-
Jansen LE, Black BE, Foltz DR, Cleveland DW. Propagation of centromeric chromatin requires exit from mitosis. J Cell Biol 2007, 176:795-805. 10.1083/jcb.200701066, 2064054, 17339380.
-
(2007)
J Cell Biol
, vol.176
, pp. 795-805
-
-
Jansen, L.E.1
Black, B.E.2
Foltz, D.R.3
Cleveland, D.W.4
-
32
-
-
84255162049
-
Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity
-
10.1016/j.molcel.2011.12.006, 22195966
-
Ray-Gallet D, Woolfe A, Vassias I, Pellentz C, Lacoste N, Puri A, Schultz DC, Pchelintsev NA, Adams PD, Jansen LE, Almouzni G. Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity. Mol Cell 2011, 44:928-941. 10.1016/j.molcel.2011.12.006, 22195966.
-
(2011)
Mol Cell
, vol.44
, pp. 928-941
-
-
Ray-Gallet, D.1
Woolfe, A.2
Vassias, I.3
Pellentz, C.4
Lacoste, N.5
Puri, A.6
Schultz, D.C.7
Pchelintsev, N.A.8
Adams, P.D.9
Jansen, L.E.10
Almouzni, G.11
-
33
-
-
0035954427
-
Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B
-
10.1083/jcb.153.7.1341, 2150718, 11425866
-
Kimura H, Cook PR. Kinetics of core histones in living human cells: little exchange of H3 and H4 and some rapid exchange of H2B. J Cell Biol 2001, 153:1341-1353. 10.1083/jcb.153.7.1341, 2150718, 11425866.
-
(2001)
J Cell Biol
, vol.153
, pp. 1341-1353
-
-
Kimura, H.1
Cook, P.R.2
-
34
-
-
29744447772
-
Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells
-
10.1016/j.devcel.2005.10.017, 1868458, 16399082
-
Meshorer E, Yellajoshula D, George E, Scambler PJ, Brown DT, Misteli T. Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells. Dev Cell 2006, 10:105-116. 10.1016/j.devcel.2005.10.017, 1868458, 16399082.
-
(2006)
Dev Cell
, vol.10
, pp. 105-116
-
-
Meshorer, E.1
Yellajoshula, D.2
George, E.3
Scambler, P.J.4
Brown, D.T.5
Misteli, T.6
-
35
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
10.1073/pnas.1016071107, 3003124, 21106759
-
Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, Hanna J, Lodato MA, Frampton GM, Sharp PA, Boyer LA, Young RA, Jaenisch R. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A 2010, 107:21931-21936. 10.1073/pnas.1016071107, 3003124, 21106759.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
Boyer, L.A.11
Young, R.A.12
Jaenisch, R.13
-
36
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
10.1038/nature09692, 21160473
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 2011, 470:279-283. 10.1038/nature09692, 21160473.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
37
-
-
65549095078
-
Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription
-
10.1074/jbc.M808220200, 2658090, 19155214
-
Li B, Jackson J, Simon MD, Fleharty B, Gogol M, Seidel C, Workman JL, Shilatifard A. Histone H3 lysine 36 dimethylation (H3K36me2) is sufficient to recruit the Rpd3s histone deacetylase complex and to repress spurious transcription. J Biol Chem 2009, 284:7970-7976. 10.1074/jbc.M808220200, 2658090, 19155214.
-
(2009)
J Biol Chem
, vol.284
, pp. 7970-7976
-
-
Li, B.1
Jackson, J.2
Simon, M.D.3
Fleharty, B.4
Gogol, M.5
Seidel, C.6
Workman, J.L.7
Shilatifard, A.8
-
38
-
-
27744577727
-
Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription
-
10.1016/j.cell.2005.10.023, 16286007
-
Carrozza MJ, Li B, Florens L, Suganuma T, Swanson SK, Lee KK, Shia WJ, Anderson S, Yates J, Washburn MP, Workman JL. Histone H3 methylation by Set2 directs deacetylation of coding regions by Rpd3S to suppress spurious intragenic transcription. Cell 2005, 123:581-592. 10.1016/j.cell.2005.10.023, 16286007.
-
(2005)
Cell
, vol.123
, pp. 581-592
-
-
Carrozza, M.J.1
Li, B.2
Florens, L.3
Suganuma, T.4
Swanson, S.K.5
Lee, K.K.6
Shia, W.J.7
Anderson, S.8
Yates, J.9
Washburn, M.P.10
Workman, J.L.11
-
39
-
-
77951956458
-
Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes
-
10.1038/nsmb.1806, 2917008, 20418881
-
Barski A, Chepelev I, Liko D, Cuddapah S, Fleming AB, Birch J, Cui K, White RJ, Zhao K. Pol II and its associated epigenetic marks are present at Pol III-transcribed noncoding RNA genes. Nat Struct Mol Biol 2010, 17:629-634. 10.1038/nsmb.1806, 2917008, 20418881.
-
(2010)
Nat Struct Mol Biol
, vol.17
, pp. 629-634
-
-
Barski, A.1
Chepelev, I.2
Liko, D.3
Cuddapah, S.4
Fleming, A.B.5
Birch, J.6
Cui, K.7
White, R.J.8
Zhao, K.9
-
40
-
-
0031031106
-
In vitro low propensity to form nucleosomes of four telomeric sequences
-
10.1016/S0014-5793(96)01318-X, 9000509
-
Cacchione S, Cerone MA, Savino M. In vitro low propensity to form nucleosomes of four telomeric sequences. FEBS Lett 1997, 400:37-41. 10.1016/S0014-5793(96)01318-X, 9000509.
-
(1997)
FEBS Lett
, vol.400
, pp. 37-41
-
-
Cacchione, S.1
Cerone, M.A.2
Savino, M.3
-
41
-
-
31544446038
-
Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions
-
10.1016/j.molcel.2005.12.010, 16455495
-
Adkins MW, Tyler JK. Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Mol Cell 2006, 21:405-416. 10.1016/j.molcel.2005.12.010, 16455495.
-
(2006)
Mol Cell
, vol.21
, pp. 405-416
-
-
Adkins, M.W.1
Tyler, J.K.2
-
42
-
-
80052411928
-
Nuclear mobility and mitotic chromosome binding: similarities between pioneer transcription factor FoxA and linker histone H1
-
10.1101/sqb.2010.75.061, 21502411
-
Zaret KS, Caravaca JM, Tulin A, Sekiya T. Nuclear mobility and mitotic chromosome binding: similarities between pioneer transcription factor FoxA and linker histone H1. Cold Spring Harb Symp Quant Biol 2010, 75:219-226. 10.1101/sqb.2010.75.061, 21502411.
-
(2010)
Cold Spring Harb Symp Quant Biol
, vol.75
, pp. 219-226
-
-
Zaret, K.S.1
Caravaca, J.M.2
Tulin, A.3
Sekiya, T.4
-
43
-
-
84872269321
-
Nucleosome-driven transcription factor binding and gene regulation
-
Ballare C, Castellano G, Gaveglia L, Althammer S, Gonzalez-Vallinas J, Eyras E, Le Dily F, Zaurin R, Soronellas D, Vicent GP, Beato M. Nucleosome-driven transcription factor binding and gene regulation. Mol Cell 2013, 49:67-79.
-
(2013)
Mol Cell
, vol.49
, pp. 67-79
-
-
Ballare, C.1
Castellano, G.2
Gaveglia, L.3
Althammer, S.4
Gonzalez-Vallinas, J.5
Eyras, E.6
Le Dily, F.7
Zaurin, R.8
Soronellas, D.9
Vicent, G.P.10
Beato, M.11
-
44
-
-
35148882905
-
The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo
-
10.1128/MCB.00717-07, 2168902, 17709398
-
Schwabish MA, Struhl K. The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo. Mol Cell Biol 2007, 27:6987-6995. 10.1128/MCB.00717-07, 2168902, 17709398.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 6987-6995
-
-
Schwabish, M.A.1
Struhl, K.2
-
45
-
-
81055135515
-
Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide
-
10.1101/gad.177675.111, 3222904, 22085965
-
Teves SS, Henikoff S. Heat shock reduces stalled RNA polymerase II and nucleosome turnover genome-wide. Genes Dev 2011, 25:2387-2397. 10.1101/gad.177675.111, 3222904, 22085965.
-
(2011)
Genes Dev
, vol.25
, pp. 2387-2397
-
-
Teves, S.S.1
Henikoff, S.2
-
46
-
-
0041828953
-
Transcription elongation factors repress transcription initiation from cryptic sites
-
10.1126/science.1087374, 12934008
-
Kaplan CD, Laprade L, Winston F. Transcription elongation factors repress transcription initiation from cryptic sites. Science 2003, 301:1096-1099. 10.1126/science.1087374, 12934008.
-
(2003)
Science
, vol.301
, pp. 1096-1099
-
-
Kaplan, C.D.1
Laprade, L.2
Winston, F.3
-
47
-
-
16244384503
-
A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation
-
10.1128/MCB.25.8.3305-3316.2005, 1069628, 15798214
-
Kizer KO, Phatnani HP, Shibata Y, Hall H, Greenleaf AL, Strahl BD. A novel domain in Set2 mediates RNA polymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol Cell Biol 2005, 25:3305-3316. 10.1128/MCB.25.8.3305-3316.2005, 1069628, 15798214.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 3305-3316
-
-
Kizer, K.O.1
Phatnani, H.P.2
Shibata, Y.3
Hall, H.4
Greenleaf, A.L.5
Strahl, B.D.6
-
48
-
-
34250782684
-
Extraction, purification and analysis of histones
-
10.1038/nprot.2007.202, 17545981
-
Shechter D, Dormann HL, Allis CD, Hake SB. Extraction, purification and analysis of histones. Nat Protoc 2007, 2:1445-1457. 10.1038/nprot.2007.202, 17545981.
-
(2007)
Nat Protoc
, vol.2
, pp. 1445-1457
-
-
Shechter, D.1
Dormann, H.L.2
Allis, C.D.3
Hake, S.B.4
-
49
-
-
34249026300
-
High-resolution profiling of histone methylations in the human genome
-
10.1016/j.cell.2007.05.009, 17512414
-
Barski A, Cuddapah S, Cui K, Roh TY, Schones DE, Wang Z, Wei G, Chepelev I, Zhao K. High-resolution profiling of histone methylations in the human genome. Cell 2007, 129:823-837. 10.1016/j.cell.2007.05.009, 17512414.
-
(2007)
Cell
, vol.129
, pp. 823-837
-
-
Barski, A.1
Cuddapah, S.2
Cui, K.3
Roh, T.Y.4
Schones, D.E.5
Wang, Z.6
Wei, G.7
Chepelev, I.8
Zhao, K.9
-
50
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
51
-
-
67650711619
-
A clustering approach for identification of enriched domains from histone modification ChIP-Seq data
-
10.1093/bioinformatics/btp340, 2732366, 19505939
-
Zang C, Schones DE, Zeng C, Cui K, Zhao K, Peng W. A clustering approach for identification of enriched domains from histone modification ChIP-Seq data. Bioinformatics 2009, 25:1952-1958. 10.1093/bioinformatics/btp340, 2732366, 19505939.
-
(2009)
Bioinformatics
, vol.25
, pp. 1952-1958
-
-
Zang, C.1
Schones, D.E.2
Zeng, C.3
Cui, K.4
Zhao, K.5
Peng, W.6
-
52
-
-
23844525077
-
Repbase Update, a database of eukaryotic repetitive elements
-
10.1159/000084979, 16093699
-
Jurka J, Kapitonov VV, Pavlicek A, Klonowski P, Kohany O, Walichiewicz J. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 2005, 110:462-467. 10.1159/000084979, 16093699.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
53
-
-
84876996918
-
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
-
10.1186/gb-2013-14-4-r36, 23618408
-
Kim D, Pertea G, Trapnell C, Pimentel H, Kelley R, Salzberg SL. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions. Genome Biol 2013, 14:R36. 10.1186/gb-2013-14-4-r36, 23618408.
-
(2013)
Genome Biol
, vol.14
-
-
Kim, D.1
Pertea, G.2
Trapnell, C.3
Pimentel, H.4
Kelley, R.5
Salzberg, S.L.6
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