메뉴 건너뛰기




Volumn 25, Issue 3, 2015, Pages 381-390

Asymmetric nucleosomes flank promoters in the budding yeast genome

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; HISTONE; MICROCOCCAL NUCLEASE; CHROMATIN; NUCLEOSOME;

EID: 84923924611     PISSN: 10889051     EISSN: 15495469     Source Type: Journal    
DOI: 10.1101/gr.182618.114     Document Type: Article
Times cited : (75)

References (33)
  • 1
    • 16844384065 scopus 로고    scopus 로고
    • Split decision: What happens to nucleosomes during DNA replication?
    • Annunziato AT. 2005. Split decision: what happens to nucleosomes during DNA replication? J Biol Chem 280: 12065-12068.
    • (2005) J Biol Chem , vol.280 , pp. 12065-12068
    • Annunziato, A.T.1
  • 2
    • 84862979650 scopus 로고    scopus 로고
    • A map of nucleosome positions in yeast at base-pair resolution
    • Brogaard K, Xi L, Wang JP, Widom J. 2012a. A map of nucleosome positions in yeast at base-pair resolution. Nature 486: 496-501.
    • (2012) Nature , vol.486 , pp. 496-501
    • Brogaard, K.1    Xi, L.2    Wang, J.P.3    Widom, J.4
  • 3
    • 84865500837 scopus 로고    scopus 로고
    • A chemical approach to mapping nucleosomes at base pair resolution in yeast
    • Brogaard KR, Xi L, Wang JP, Widom J. 2012b. A chemical approach to mapping nucleosomes at base pair resolution in yeast. Methods Enzymol 513: 315-334.
    • (2012) Methods Enzymol , vol.513 , pp. 315-334
    • Brogaard, K.R.1    Xi, L.2    Wang, J.P.3    Widom, J.4
  • 6
    • 78751659330 scopus 로고    scopus 로고
    • Nascent transcript sequencing visualizes transcription at nucleotide resolution
    • Churchman LS, Weissman JS. 2011. Nascent transcript sequencing visualizes transcription at nucleotide resolution. Nature 469: 368-373.
    • (2011) Nature , vol.469 , pp. 368-373
    • Churchman, L.S.1    Weissman, J.S.2
  • 7
    • 77952996319 scopus 로고    scopus 로고
    • Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones
    • Deal RB, Henikoff JG, Henikoff S. 2010. Genome-wide kinetics of nucleosome turnover determined by metabolic labeling of histones. Science 328: 1161-1164.
    • (2010) Science , vol.328 , pp. 1161-1164
    • Deal, R.B.1    Henikoff, J.G.2    Henikoff, S.3
  • 8
  • 10
    • 0035016612 scopus 로고    scopus 로고
    • Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: Analyses using recombinant yeast histones and immobilized templates
    • Gelbart ME, Rechsteiner T, Richmond TJ, Tsukiyama T. 2001. Interactions of Isw2 chromatin remodeling complex with nucleosomal arrays: analyses using recombinant yeast histones and immobilized templates. Mol Cell Biol 21: 2098-2106.
    • (2001) Mol Cell Biol , vol.21 , pp. 2098-2106
    • Gelbart, M.E.1    Rechsteiner, T.2    Richmond, T.J.3    Tsukiyama, T.4
  • 11
    • 65249164132 scopus 로고    scopus 로고
    • Mechanisms that specify promoter nucleosome location and identity
    • Hartley PD, Madhani HD. 2009. Mechanisms that specify promoter nucleosome location and identity. Cell 137: 445-458.
    • (2009) Cell , vol.137 , pp. 445-458
    • Hartley, P.D.1    Madhani, H.D.2
  • 14
    • 84879656010 scopus 로고    scopus 로고
    • H3.3-H4 tetramer splitting events feature cell-type specific enhancers
    • Huang C, Zhang Z, Xu M, Li Y, Li Z, Ma Y, Cai T, Zhu B. 2013. H3.3-H4 tetramer splitting events feature cell-type specific enhancers. PLoS Genet 9: e1003558.
    • (2013) PLoS Genet , vol.9 , pp. e1003558
    • Huang, C.1    Zhang, Z.2    Xu, M.3    Li, Y.4    Li, Z.5    Ma, Y.6    Cai, T.7    Zhu, B.8
  • 15
    • 84901980324 scopus 로고    scopus 로고
    • Mechanisms underlying nucleosome positioning in vivo
    • Hughes AL, Rando OJ. 2014. Mechanisms underlying nucleosome positioning in vivo. Annu Rev Biophys 43: 41-63.
    • (2014) Annu Rev Biophys , vol.43 , pp. 41-63
    • Hughes, A.L.1    Rando, O.J.2
  • 16
    • 75349098018 scopus 로고    scopus 로고
    • A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome
    • Jiang C, Pugh BF. 2009. A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome. Genome Biol 10: R109.
    • (2009) Genome Biol , vol.10 , pp. R109
    • Jiang, C.1    Pugh, B.F.2
  • 17
    • 79951992242 scopus 로고    scopus 로고
    • Splitting of H3-H4 tetramers at transcriptionally active genes undergoing dynamic histone exchange
    • Katan-Khaykovich Y, Struhl K. 2011. Splitting of H3-H4 tetramers at transcriptionally active genes undergoing dynamic histone exchange. Proc Natl Acad Sci 108: 1296-1301.
    • (2011) Proc Natl Acad Sci , vol.108 , pp. 1296-1301
    • Katan-Khaykovich, Y.1    Struhl, K.2
  • 18
    • 0026036393 scopus 로고
    • Transcription-induced nucleosome 'splitting': An underlying structure for DNase I sensitive chromatin
    • Lee MS, Garrard WT. 1991. Transcription-induced nucleosome 'splitting': an underlying structure for DNase I sensitive chromatin. EMBO J 10: 607-615.
    • (1991) EMBO J , vol.10 , pp. 607-615
    • Lee, M.S.1    Garrard, W.T.2
  • 19
    • 34247638974 scopus 로고    scopus 로고
    • Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method
    • Leschziner AE, Saha A, Wittmeyer J, Zhang Y, Bustamante C, Cairns BR, Nogales E. 2007. Conformational flexibility in the chromatin remodeler RSC observed by electron microscopy and the orthogonal tilt reconstruction method. Proc Natl Acad Sci 104: 4913-4918.
    • (2007) Proc Natl Acad Sci , vol.104 , pp. 4913-4918
    • Leschziner, A.E.1    Saha, A.2    Wittmeyer, J.3    Zhang, Y.4    Bustamante, C.5    Cairns, B.R.6    Nogales, E.7
  • 20
    • 29444454191 scopus 로고    scopus 로고
    • Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling
    • Li B, Pattenden SG, Lee D, Gutierrez J, Chen J, Seidel C, Gerton J, Workman JL. 2005. Preferential occupancy of histone variant H2AZ at inactive promoters influences local histone modifications and chromatin remodeling. Proc Natl Acad Sci 102: 18385-18390.
    • (2005) Proc Natl Acad Sci , vol.102 , pp. 18385-18390
    • Li, B.1    Pattenden, S.G.2    Lee, D.3    Gutierrez, J.4    Chen, J.5    Seidel, C.6    Gerton, J.7    Workman, J.L.8
  • 24
    • 84881166117 scopus 로고    scopus 로고
    • Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes
    • Narlikar GJ, Sundaramoorthy R, Owen-Hughes T. 2013. Mechanisms and functions of ATP-dependent chromatin-remodeling enzymes. Cell 154: 490-503.
    • (2013) Cell , vol.154 , pp. 490-503
    • Narlikar, G.J.1    Sundaramoorthy, R.2    Owen-Hughes, T.3
  • 26
    • 0017263385 scopus 로고
    • Genomic transcriptional activity and the structure of chromatin
    • Reeves R, Jones A. 1976. Genomic transcriptional activity and the structure of chromatin. Nature 260: 495-500.
    • (1976) Nature , vol.260 , pp. 495-500
    • Reeves, R.1    Jones, A.2
  • 27
    • 35148882905 scopus 로고    scopus 로고
    • The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo
    • Schwabish MA, Struhl K. 2007. The Swi/Snf complex is important for histone eviction during transcriptional activation and RNA polymerase II elongation in vivo. Mol Cell Biol 27: 6987-6995.
    • (2007) Mol Cell Biol , vol.27 , pp. 6987-6995
    • Schwabish, M.A.1    Struhl, K.2
  • 31
    • 84893129292 scopus 로고    scopus 로고
    • Mot1 redistributes TBP from TATA-containing to TATA-less promoters
    • Zentner GE, Henikoff S. 2013. Mot1 redistributes TBP from TATA-containing to TATA-less promoters. Mol Cell Biol 33: 4996-5004.
    • (2013) Mol Cell Biol , vol.33 , pp. 4996-5004
    • Zentner, G.E.1    Henikoff, S.2
  • 32
    • 84874764239 scopus 로고    scopus 로고
    • ISWI and CHD chromatin remodelers bind promoters but act in gene bodies
    • Zentner GE, Tsukiyama T, Henikoff S. 2013. ISWI and CHD chromatin remodelers bind promoters but act in gene bodies. PLoS Genet 9: e1003317.
    • (2013) PLoS Genet , vol.9 , pp. e1003317
    • Zentner, G.E.1    Tsukiyama, T.2    Henikoff, S.3
  • 33
    • 26844489856 scopus 로고    scopus 로고
    • Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss
    • Zhang H, Roberts DN, Cairns BR. 2005. Genome-wide dynamics of Htz1, a histone H2A variant that poises repressed/basal promoters for activation through histone loss. Cell 123: 219-231.
    • (2005) Cell , vol.123 , pp. 219-231
    • Zhang, H.1    Roberts, D.N.2    Cairns, B.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.