메뉴 건너뛰기




Volumn 33, Issue 24, 2013, Pages 4779-4792

Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast

Author keywords

[No Author keywords available]

Indexed keywords

HISTONE H3; LYSINE; RNA POLYMERASE II; CHAPERONE; COMPLEMENTARY RNA; HISTONE; HISTONE LYSINE METHYLTRANSFERASE; MESSENGER RNA; NUCLEOSOME; SCHIZOSACCHAROMYCES POMBE PROTEIN; SET2 PROTEIN, S POMBE; SPT6 PROTEIN, S POMBE; TRANSCRIPTOME;

EID: 84893040276     PISSN: 02707306     EISSN: 10985549     Source Type: Journal    
DOI: 10.1128/MCB.01068-13     Document Type: Article
Times cited : (78)

References (86)
  • 1
    • 84875590101 scopus 로고    scopus 로고
    • Long noncoding RNAs: past, present, and future
    • Kung JT, Colognori D, Lee JT. 2013. Long noncoding RNAs: past, present, and future. Genetics 193:651-669.
    • (2013) Genetics , vol.193 , pp. 651-669
    • Kung, J.T.1    Colognori, D.2    Lee, J.T.3
  • 2
    • 84864395101 scopus 로고    scopus 로고
    • Long non-coding RNAs and human disease
    • Harries LW. 2012. Long non-coding RNAs and human disease. Biochem. Soc. Trans. 40:902-906.
    • (2012) Biochem. Soc. Trans. , vol.40 , pp. 902-906
    • Harries, L.W.1
  • 3
    • 80053569699 scopus 로고    scopus 로고
    • Pervasive transcription: lessons from yeast
    • Tisseur M, Kwapisz M, Morillon A. 2011. Pervasive transcription: lessons from yeast. Biochimie 93:1889-1896.
    • (2011) Biochimie , vol.93 , pp. 1889-1896
    • Tisseur, M.1    Kwapisz, M.2    Morillon, A.3
  • 4
    • 0023134783 scopus 로고
    • The SPT6 gene is essential for growth and is required for delta-mediated transcription in Saccharomyces cerevisiae
    • Clark-Adams CD, Winston F. 1987. The SPT6 gene is essential for growth and is required for delta-mediated transcription in Saccharomyces cerevisiae. Mol. Cell. Biol. 7:679-686.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 679-686
    • Clark-Adams, C.D.1    Winston, F.2
  • 5
    • 0023097313 scopus 로고
    • SSN20 is an essential gene with mutant alleles that suppress defects in SUC2 transcription in Saccharomyces cerevisiae
    • Neigeborn L, Celenza JL, Carlson M. 1987. SSN20 is an essential gene with mutant alleles that suppress defects in SUC2 transcription in Saccharomyces cerevisiae. Mol. Cell. Biol. 7:672-678.
    • (1987) Mol. Cell. Biol. , vol.7 , pp. 672-678
    • Neigeborn, L.1    Celenza, J.L.2    Carlson, M.3
  • 8
    • 78649684166 scopus 로고    scopus 로고
    • Noncanonical tandem SH2 enables interaction of elongation factor Spt6 with RNA polymerase II
    • Diebold ML, Loeliger E, Koch M, Winston F, Cavarelli J, Romier C. 2010. Noncanonical tandem SH2 enables interaction of elongation factor Spt6 with RNA polymerase II. J. Biol. Chem. 285:38389-38398.
    • (2010) J. Biol. Chem. , vol.285 , pp. 38389-38398
    • Diebold, M.L.1    Loeliger, E.2    Koch, M.3    Winston, F.4    Cavarelli, J.5    Romier, C.6
  • 9
    • 80051688482 scopus 로고    scopus 로고
    • Solution structure of tandem SH2 domains from Spt6 protein and their binding to the phosphorylated RNA polymerase II C-terminal domain
    • Liu J, Zhang J, Gong Q, Xiong P, Huang H, Wu B, Lu G, Wu J, Shi Y. 2011. Solution structure of tandem SH2 domains from Spt6 protein and their binding to the phosphorylated RNA polymerase II C-terminal domain. J. Biol. Chem. 286:29218-29226.
    • (2011) J. Biol. Chem. , vol.286 , pp. 29218-29226
    • Liu, J.1    Zhang, J.2    Gong, Q.3    Xiong, P.4    Huang, H.5    Wu, B.6    Lu, G.7    Wu, J.8    Shi, Y.9
  • 10
    • 78649713364 scopus 로고    scopus 로고
    • A tandem SH2 domain in transcription elongation factor Spt6 binds the phosphorylated RNA polymerase II C-terminal repeat domain (CTD)
    • Sun M, Lariviere L, Dengl S, Mayer A, Cramer P. 2010. A tandem SH2 domain in transcription elongation factor Spt6 binds the phosphorylated RNA polymerase II C-terminal repeat domain (CTD). J. Biol. Chem. 285:41597-41603.
    • (2010) J. Biol. Chem. , vol.285 , pp. 41597-41603
    • Sun, M.1    Lariviere, L.2    Dengl, S.3    Mayer, A.4    Cramer, P.5
  • 11
    • 33846525436 scopus 로고    scopus 로고
    • The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export
    • Yoh SM, Cho H, Pickle L, Evans RM, Jones KA. 2007. The Spt6 SH2 domain binds Ser2-P RNAPII to direct Iws1-dependent mRNA splicing and export. Genes Dev. 21:160-174.
    • (2007) Genes Dev. , vol.21 , pp. 160-174
    • Yoh, S.M.1    Cho, H.2    Pickle, L.3    Evans, R.M.4    Jones, K.A.5
  • 12
    • 0029890667 scopus 로고    scopus 로고
    • Evidence that Spt6 controls chromatin structure by a direct interaction with histones
    • Bortvin A, Winston F. 1996. Evidence that Spt6 controls chromatin structure by a direct interaction with histones. Science 272:1473-1476.
    • (1996) Science , vol.272 , pp. 1473-1476
    • Bortvin, A.1    Winston, F.2
  • 13
    • 0033881828 scopus 로고    scopus 로고
    • Functional interaction between pleiotropic transactivator pUL69 of human cytomegalovirus and the human homolog of yeast chromatin regulatory protein SPT6
    • Winkler M, Aus Dem Siepen T, Stamminger T. 2000. Functional interaction between pleiotropic transactivator pUL69 of human cytomegalovirus and the human homolog of yeast chromatin regulatory protein SPT6. J. Virol. 74:8053-8064.
    • (2000) J. Virol. , vol.74 , pp. 8053-8064
    • Winkler, M.1    Aus Dem Siepen, T.2    Stamminger, T.3
  • 14
    • 78649717707 scopus 로고    scopus 로고
    • The structure of an Iws1/Spt6 complex reveals an interaction domain conserved in TFIIS, Elongin A, and Med26
    • Diebold ML, Koch M, Loeliger E, Cura V, Winston F, Cavarelli J, Romier C. 2010. The structure of an Iws1/Spt6 complex reveals an interaction domain conserved in TFIIS, Elongin A, and Med26. EMBO J. 29:3979-3991.
    • (2010) EMBO J. , vol.29 , pp. 3979-3991
    • Diebold, M.L.1    Koch, M.2    Loeliger, E.3    Cura, V.4    Winston, F.5    Cavarelli, J.6    Romier, C.7
  • 18
    • 31544446038 scopus 로고    scopus 로고
    • Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions
    • Adkins MW, Tyler JK. 2006. Transcriptional activators are dispensable for transcription in the absence of Spt6-mediated chromatin reassembly of promoter regions. Mol. Cell 21:405-416.
    • (2006) Mol. Cell , vol.21 , pp. 405-416
    • Adkins, M.W.1    Tyler, J.K.2
  • 19
    • 78751498728 scopus 로고    scopus 로고
    • Control of chromatin structure by spt6: different consequences in coding and regulatory regions
    • Ivanovska I, Jacques PE, Rando OJ, Robert F, Winston F. 2011. Control of chromatin structure by spt6: different consequences in coding and regulatory regions. Mol. Cell. Biol. 31:531-541.
    • (2011) Mol. Cell. Biol. , vol.31 , pp. 531-541
    • Ivanovska, I.1    Jacques, P.E.2    Rando, O.J.3    Robert, F.4    Winston, F.5
  • 20
    • 43549101409 scopus 로고    scopus 로고
    • Requirements for chromatin reassembly during transcriptional downregulation of a heat shock gene in Saccharomyces cerevisiae
    • Jensen MM, Christensen MS, Bonven B, Jensen TH. 2008. Requirements for chromatin reassembly during transcriptional downregulation of a heat shock gene in Saccharomyces cerevisiae. FEBS J. 275:2956-2964.
    • (2008) FEBS J. , vol.275 , pp. 2956-2964
    • Jensen, M.M.1    Christensen, M.S.2    Bonven, B.3    Jensen, T.H.4
  • 23
    • 21844435714 scopus 로고    scopus 로고
    • Npl3 is an antagonist of mRNA 3= end formation by RNA polymerase II
    • Bucheli ME, Buratowski S. 2005. Npl3 is an antagonist of mRNA 3= end formation by RNA polymerase II. EMBO J. 24:2150-2160.
    • (2005) EMBO J. , vol.24 , pp. 2150-2160
    • Bucheli, M.E.1    Buratowski, S.2
  • 24
    • 12544260507 scopus 로고    scopus 로고
    • Interaction between transcription elongation factors and mRNA 3=-end formation at the Saccharomyces cerevisiae GAL10-GAL7 locus
    • Kaplan CD, Holland MJ, Winston F. 2005. Interaction between transcription elongation factors and mRNA 3=-end formation at the Saccharomyces cerevisiae GAL10-GAL7 locus. J. Biol. Chem. 280:913-922.
    • (2005) J. Biol. Chem. , vol.280 , pp. 913-922
    • Kaplan, C.D.1    Holland, M.J.2    Winston, F.3
  • 26
    • 33645834959 scopus 로고    scopus 로고
    • The BUR1 cyclindependent protein kinase is required for the normal pattern of histone methylation by SET2
    • Chu Y, Sutton A, Sternglanz R, Prelich G. 2006. The BUR1 cyclindependent protein kinase is required for the normal pattern of histone methylation by SET2. Mol. Cell. Biol. 26:3029-3038.
    • (2006) Mol. Cell. Biol. , vol.26 , pp. 3029-3038
    • Chu, Y.1    Sutton, A.2    Sternglanz, R.3    Prelich, G.4
  • 27
    • 58049206591 scopus 로고    scopus 로고
    • The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation
    • Yoh SM, Lucas JS, Jones KA. 2008. The Iws1:Spt6:CTD complex controls cotranscriptional mRNA biosynthesis and HYPB/Setd2-mediated histone H3K36 methylation. Genes Dev. 22:3422-3434.
    • (2008) Genes Dev. , vol.22 , pp. 3422-3434
    • Yoh, S.M.1    Lucas, J.S.2    Jones, K.A.3
  • 29
    • 0041828953 scopus 로고    scopus 로고
    • Transcription elongation factors repress transcription initiation from cryptic sites
    • Kaplan CD, Laprade L, Winston F. 2003. Transcription elongation factors repress transcription initiation from cryptic sites. Science 301:1096-1099.
    • (2003) Science , vol.301 , pp. 1096-1099
    • Kaplan, C.D.1    Laprade, L.2    Winston, F.3
  • 30
    • 0036964090 scopus 로고    scopus 로고
    • Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure
    • Formosa T, Ruone S, Adams MD, Olsen AE, Eriksson P, Yu Y, Rhoades AR, Kaufman PD, Stillman DJ. 2002. Defects in SPT16 or POB3 (yFACT) in Saccharomyces cerevisiae cause dependence on the Hir/Hpc pathway: polymerase passage may degrade chromatin structure. Genetics 162:1557-1571.
    • (2002) Genetics , vol.162 , pp. 1557-1571
    • Formosa, T.1    Ruone, S.2    Adams, M.D.3    Olsen, A.E.4    Eriksson, P.5    Yu, Y.6    Rhoades, A.R.7    Kaufman, P.D.8    Stillman, D.J.9
  • 31
    • 0032004953 scopus 로고    scopus 로고
    • Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae
    • Hartzog GA, Wada T, Handa H, Winston F. 1998. Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae. Genes Dev. 12:357-369.
    • (1998) Genes Dev. , vol.12 , pp. 357-369
    • Hartzog, G.A.1    Wada, T.2    Handa, H.3    Winston, F.4
  • 32
    • 56849114880 scopus 로고    scopus 로고
    • Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome
    • doi:10.1371/journal.pbio.0060277
    • Cheung V, Chua G, Batada NN, Landry CR, Michnick SW, Hughes TR, Winston F. 2008. Chromatin- and transcription-related factors repress transcription from within coding regions throughout the Saccharomyces cerevisiae genome. PLoS Biol. 6:e277. doi:10.1371/journal.pbio.0060277.
    • (2008) PLoS Biol. , vol.6
    • Cheung, V.1    Chua, G.2    Batada, N.N.3    Landry, C.R.4    Michnick, S.W.5    Hughes, T.R.6    Winston, F.7
  • 33
    • 84880393238 scopus 로고    scopus 로고
    • Spt6 prevents transcription-coupled loss of posttranslationally modified histone H3
    • Kato H, Okazaki K, Iida T, Nakayama J, Murakami Y, Urano T. 2013. Spt6 prevents transcription-coupled loss of posttranslationally modified histone H3. Sci. Rep. 3:2186.
    • (2013) Sci. Rep. , vol.3 , pp. 2186
    • Kato, H.1    Okazaki, K.2    Iida, T.3    Nakayama, J.4    Murakami, Y.5    Urano, T.6
  • 34
  • 35
    • 0027221804 scopus 로고
    • emb-5, a gene required for the correct timing of gut precursor cell division during gastrulation in Caenorhabditis elegans, encodes a protein similar to the yeast nuclear protein SPT6
    • Nishiwaki K, Sano T, Miwa J. 1993. emb-5, a gene required for the correct timing of gut precursor cell division during gastrulation in Caenorhabditis elegans, encodes a protein similar to the yeast nuclear protein SPT6. Mol. Gen. Genet. 239:313-322.
    • (1993) Mol. Gen. Genet. , vol.239 , pp. 313-322
    • Nishiwaki, K.1    Sano, T.2    Miwa, J.3
  • 36
    • 0036336890 scopus 로고    scopus 로고
    • The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo
    • Keegan BR, Feldman JL, Lee DH, Koos DS, Ho RK, Stainier DY, Yelon D. 2002. The elongation factors Pandora/Spt6 and Foggy/Spt5 promote transcription in the zebrafish embryo. Development 129:1623-1632.
    • (2002) Development , vol.129 , pp. 1623-1632
    • Keegan, B.R.1    Feldman, J.L.2    Lee, D.H.3    Koos, D.S.4    Ho, R.K.5    Stainier, D.Y.6    Yelon, D.7
  • 37
    • 84866564544 scopus 로고    scopus 로고
    • The histone chaperone Spt6 is required for activation-induced cytidine deaminase target determination through H3K4me3 regulation
    • Begum NA, Stanlie A, Nakata M, Akiyama H, Honjo T. 2012. The histone chaperone Spt6 is required for activation-induced cytidine deaminase target determination through H3K4me3 regulation. J. Biol. Chem. 287:32415-32429.
    • (2012) J. Biol. Chem. , vol.287 , pp. 32415-32429
    • Begum, N.A.1    Stanlie, A.2    Nakata, M.3    Akiyama, H.4    Honjo, T.5
  • 38
    • 79952605355 scopus 로고    scopus 로고
    • Chromatin reassembly factors are involved in transcriptional interference promoting HIV latency
    • Gallastegui E, Millan-Zambrano G, Terme JM, Chavez S, Jordan A. 2011. Chromatin reassembly factors are involved in transcriptional interference promoting HIV latency. J. Virol. 85:3187-3202.
    • (2011) J. Virol. , vol.85 , pp. 3187-3202
    • Gallastegui, E.1    Millan-Zambrano, G.2    Terme, J.M.3    Chavez, S.4    Jordan, A.5
  • 40
    • 33645128681 scopus 로고    scopus 로고
    • Basic methods for fission yeast
    • Forsburg SL, Rhind N. 2006. Basic methods for fission yeast. Yeast 23:173-183.
    • (2006) Yeast , vol.23 , pp. 173-183
    • Forsburg, S.L.1    Rhind, N.2
  • 42
    • 0036081355 scopus 로고    scopus 로고
    • Gene Expr. Omnibus: NCBI gene expression and hybridization array data repository
    • Edgar R, Domrachev M, Lash AE. 2002. Gene Expr. Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res. 30:207-210.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 207-210
    • Edgar, R.1    Domrachev, M.2    Lash, A.E.3
  • 43
    • 9144229663 scopus 로고    scopus 로고
    • Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data
    • doi:10.1186/1471-2164-4-27
    • Lyne R, Burns G, Mata J, Penkett CJ, Rustici G, Chen D, Langford C, Vetrie D, Bahler J. 2003. Whole-genome microarrays of fission yeast: characteristics, accuracy, reproducibility, and processing of array data. BMC Genomics 4:27. doi:10.1186/1471-2164-4-27.
    • (2003) BMC Genomics , vol.4 , pp. 27
    • Lyne, R.1    Burns, G.2    Mata, J.3    Penkett, C.J.4    Rustici, G.5    Chen, D.6    Langford, C.7    Vetrie, D.8    Bahler, J.9
  • 44
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • Trapnell C, Pachter L, Salzberg SL. 2009. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25:1105-1111.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 45
    • 84870575288 scopus 로고    scopus 로고
    • Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin
    • Shim YS, Choi Y, Kang K, Cho K, Oh S, Lee J, Grewal SI, Lee D. 2012. Hrp3 controls nucleosome positioning to suppress non-coding transcription in eu- and heterochromatin. EMBO J. 31:4375-4387.
    • (2012) EMBO J. , vol.31 , pp. 4375-4387
    • Shim, Y.S.1    Choi, Y.2    Kang, K.3    Cho, K.4    Oh, S.5    Lee, J.6    Grewal, S.I.7    Lee, D.8
  • 47
    • 70349292569 scopus 로고    scopus 로고
    • Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs
    • Zofall M, Fischer T, Zhang K, Zhou M, Cui B, Veenstra TD, Grewal SI. 2009. Histone H2A.Z cooperates with RNAi and heterochromatin factors to suppress antisense RNAs. Nature 461:419-422.
    • (2009) Nature , vol.461 , pp. 419-422
    • Zofall, M.1    Fischer, T.2    Zhang, K.3    Zhou, M.4    Cui, B.5    Veenstra, T.D.6    Grewal, S.I.7
  • 49
    • 77955903649 scopus 로고    scopus 로고
    • Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions
    • Garcia JF, Dumesic PA, Hartley PD, El-Samad H, Madhani HD. 2010. Combinatorial, site-specific requirement for heterochromatic silencing factors in the elimination of nucleosome-free regions. Genes Dev. 24:1758-1771.
    • (2010) Genes Dev. , vol.24 , pp. 1758-1771
    • Garcia, J.F.1    Dumesic, P.A.2    Hartley, P.D.3    El-Samad, H.4    Madhani, H.D.5
  • 50
    • 56549083230 scopus 로고    scopus 로고
    • The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8
    • Helmlinger D, Marguerat S, Villen J, Gygi SP, Bahler J, Winston F. 2008. The S. pombe SAGA complex controls the switch from proliferation to sexual differentiation through the opposing roles of its subunits Gcn5 and Spt8. Genes Dev. 22:3184-3195.
    • (2008) Genes Dev. , vol.22 , pp. 3184-3195
    • Helmlinger, D.1    Marguerat, S.2    Villen, J.3    Gygi, S.P.4    Bahler, J.5    Winston, F.6
  • 51
    • 24944528328 scopus 로고    scopus 로고
    • SUMO modification is involved in the maintenance of heterochromatin stability in fission yeast
    • Shin JA, Choi ES, Kim HS, Ho JC, Watts FZ, Park SD, Jang YK. 2005. SUMO modification is involved in the maintenance of heterochromatin stability in fission yeast. Mol. Cell 19:817-828.
    • (2005) Mol. Cell , vol.19 , pp. 817-828
    • Shin, J.A.1    Choi, E.S.2    Kim, H.S.3    Ho, J.C.4    Watts, F.Z.5    Park, S.D.6    Jang, Y.K.7
  • 52
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 10:R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 53
    • 80052990473 scopus 로고    scopus 로고
    • Systematic bias in high-throughput sequencing data and its correction by BEADS
    • Cheung MS, Down TA, Latorre I, Ahringer J. 2011. Systematic bias in high-throughput sequencing data and its correction by BEADS. Nucleic Acids Res. 39:e103.
    • (2011) Nucleic Acids Res. , vol.39
    • Cheung, M.S.1    Down, T.A.2    Latorre, I.3    Ahringer, J.4
  • 54
    • 57449100870 scopus 로고    scopus 로고
    • Design and analysis of ChIP-seq experiments for DNA-binding proteins
    • Kharchenko PV, Tolstorukov MY, Park PJ. 2008. Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat. Biotechnol. 26:1351-1359.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1351-1359
    • Kharchenko, P.V.1    Tolstorukov, M.Y.2    Park, P.J.3
  • 55
    • 84878473105 scopus 로고    scopus 로고
    • A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription
    • doi:10.1371/journal.pgen.1003479
    • van Bakel H, Tsui K, Gebbia M, Mnaimneh S, Hughes TR, Nislow C. 2013. A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription. PLoS Genet. 9:e1003479. doi:10.1371/journal.pgen.1003479.
    • (2013) PLoS Genet. , vol.9
    • van Bakel, H.1    Tsui, K.2    Gebbia, M.3    Mnaimneh, S.4    Hughes, T.R.5    Nislow, C.6
  • 56
    • 70249116059 scopus 로고    scopus 로고
    • The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts
    • Anderson HE, Wardle J, Korkut SV, Murton HE, Lopez-Maury L, Bahler J, Whitehall SK. 2009. The fission yeast HIRA histone chaperone is required for promoter silencing and the suppression of cryptic antisense transcripts. Mol. Cell. Biol. 29:5158-5167.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 5158-5167
    • Anderson, H.E.1    Wardle, J.2    Korkut, S.V.3    Murton, H.E.4    Lopez-Maury, L.5    Bahler, J.6    Whitehall, S.K.7
  • 57
    • 53549105500 scopus 로고    scopus 로고
    • TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway
    • Buhler M, Spies N, Bartel DP, Moazed D. 2008. TRAMP-mediated RNA surveillance prevents spurious entry of RNAs into the Schizosaccharomyces pombe siRNA pathway. Nat. Struct. Mol. Biol. 15:1015-1023.
    • (2008) Nat. Struct. Mol. Biol. , vol.15 , pp. 1015-1023
    • Buhler, M.1    Spies, N.2    Bartel, D.P.3    Moazed, D.4
  • 58
    • 84868679486 scopus 로고    scopus 로고
    • Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription
    • Hennig BP, Bendrin K, Zhou Y, Fischer T. 2012. Chd1 chromatin remodelers maintain nucleosome organization and repress cryptic transcription. EMBO Rep. 13:997-1003.
    • (2012) EMBO Rep. , vol.13 , pp. 997-1003
    • Hennig, B.P.1    Bendrin, K.2    Zhou, Y.3    Fischer, T.4
  • 61
    • 78650754693 scopus 로고    scopus 로고
    • Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci
    • Yamane K, Mizuguchi T, Cui B, Zofall M, Noma K, Grewal SI. 2011. Asf1/HIRA facilitate global histone deacetylation and associate with HP1 to promote nucleosome occupancy at heterochromatic loci. Mol. Cell 41:56-66.
    • (2011) Mol. Cell , vol.41 , pp. 56-66
    • Yamane, K.1    Mizuguchi, T.2    Cui, B.3    Zofall, M.4    Noma, K.5    Grewal, S.I.6
  • 62
    • 63349106578 scopus 로고    scopus 로고
    • The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency
    • doi:10.1371/journal.pone.0004886
    • Lickwar CR, Rao B, Shabalin AA, Nobel AB, Strahl BD, Lieb JD. 2009. The Set2/Rpd3S pathway suppresses cryptic transcription without regard to gene length or transcription frequency. PLoS One 4:e4886. doi:10.1371/journal.pone.0004886.
    • (2009) PLoS One , vol.4
    • Lickwar, C.R.1    Rao, B.2    Shabalin, A.A.3    Nobel, A.B.4    Strahl, B.D.5    Lieb, J.D.6
  • 63
    • 84872398729 scopus 로고    scopus 로고
    • Transcription-associated histone modifications and cryptic transcription
    • Smolle M, Workman JL. 2013. Transcription-associated histone modifications and cryptic transcription. Biochim. Biophys. Acta 1829:84-97.
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 84-97
    • Smolle, M.1    Workman, J.L.2
  • 64
    • 84875056702 scopus 로고    scopus 로고
    • The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states
    • Tomson BN, Arndt KM. 2013. The many roles of the conserved eukaryotic Paf1 complex in regulating transcription, histone modifications, and disease states. Biochim. Biophys. Acta 1829:116-126.
    • (2013) Biochim. Biophys. Acta , vol.1829 , pp. 116-126
    • Tomson, B.N.1    Arndt, K.M.2
  • 66
    • 0344022572 scopus 로고    scopus 로고
    • Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity
    • Ng HH, Robert F, Young RA, Struhl K. 2003. Targeted recruitment of Set1 histone methylase by elongating Pol II provides a localized mark and memory of recent transcriptional activity. Mol. Cell 11:709-719.
    • (2003) Mol. Cell , vol.11 , pp. 709-719
    • Ng, H.H.1    Robert, F.2    Young, R.A.3    Struhl, K.4
  • 67
    • 36248965214 scopus 로고    scopus 로고
    • Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes
    • Chu Y, Simic R, Warner MH, Arndt KM, Prelich G. 2007. Regulation of histone modification and cryptic transcription by the Bur1 and Paf1 complexes. EMBO J. 26:4646-4656.
    • (2007) EMBO J. , vol.26 , pp. 4646-4656
    • Chu, Y.1    Simic, R.2    Warner, M.H.3    Arndt, K.M.4    Prelich, G.5
  • 69
    • 68949149115 scopus 로고    scopus 로고
    • Direct Bre1-Paf1 complex interactions and RING finger-independent Bre1-Rad6 interactions mediate histone H2B ubiquitylation in yeast
    • Kim J, Roeder RG. 2009. Direct Bre1-Paf1 complex interactions and RING finger-independent Bre1-Rad6 interactions mediate histone H2B ubiquitylation in yeast. J. Biol. Chem. 284:20582-20592.
    • (2009) J. Biol. Chem. , vol.284 , pp. 20582-20592
    • Kim, J.1    Roeder, R.G.2
  • 70
    • 0141483281 scopus 로고    scopus 로고
    • The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B
    • Ng HH, Dole S, Struhl K. 2003. The Rtf1 component of the Paf1 transcriptional elongation complex is required for ubiquitination of histone H2B. J. Biol. Chem. 278:33625-33628.
    • (2003) J. Biol. Chem. , vol.278 , pp. 33625-33628
    • Ng, H.H.1    Dole, S.2    Struhl, K.3
  • 71
    • 0037019333 scopus 로고    scopus 로고
    • Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast
    • Sun ZW, Allis CD. 2002. Ubiquitination of histone H2B regulates H3 methylation and gene silencing in yeast. Nature 418:104-108.
    • (2002) Nature , vol.418 , pp. 104-108
    • Sun, Z.W.1    Allis, C.D.2
  • 72
    • 0042818412 scopus 로고    scopus 로고
    • The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p
    • Wood A, Schneider J, Dover J, Johnston M, Shilatifard A. 2003. The Paf1 complex is essential for histone monoubiquitination by the Rad6-Bre1 complex, which signals for histone methylation by COMPASS and Dot1p. J. Biol. Chem. 278:34739-34742.
    • (2003) J. Biol. Chem. , vol.278 , pp. 34739-34742
    • Wood, A.1    Schneider, J.2    Dover, J.3    Johnston, M.4    Shilatifard, A.5
  • 78
    • 16244384503 scopus 로고    scopus 로고
    • Anovel domain in Set2 mediatesRNApolymerase II interaction and couples histone H3 K36 methylation with transcript elongation
    • Kizer KO, Phatnani HP, Shibata Y, Hall H, Greenleaf AL, Strahl BD. 2005.Anovel domain in Set2 mediatesRNApolymerase II interaction and couples histone H3 K36 methylation with transcript elongation. Mol. Cell. Biol. 25:3305-3316.
    • (2005) Mol. Cell. Biol , vol.25 , pp. 3305-3316
    • Kizer, K.O.1    Phatnani, H.P.2    Shibata, Y.3    Hall, H.4    Greenleaf, A.L.5    Strahl, B.D.6
  • 80
    • 34249099730 scopus 로고    scopus 로고
    • Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin
    • Li B, Gogol M, Carey M, Lee D, Seidel C, Workman JL. 2007. Combined action of PHD and chromo domains directs the Rpd3S HDAC to transcribed chromatin. Science 316:1050-1054.
    • (2007) Science , vol.316 , pp. 1050-1054
    • Li, B.1    Gogol, M.2    Carey, M.3    Lee, D.4    Seidel, C.5    Workman, J.L.6
  • 81
    • 0037512273 scopus 로고    scopus 로고
    • The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II
    • Li B, Howe L, Anderson S, Yates JR, III, Workman JL. 2003. The Set2 histone methyltransferase functions through the phosphorylated carboxyl-terminal domain of RNA polymerase II. J. Biol. Chem. 278:8897-8903.
    • (2003) J. Biol. Chem. , vol.278 , pp. 8897-8903
    • Li, B.1    Howe, L.2    Anderson, S.3    Yates, J.R.4    Workman, J.L.5
  • 84
    • 77951249838 scopus 로고    scopus 로고
    • A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription
    • Du HN, Briggs SD. 2010. A nucleosome surface formed by histone H4, H2A, and H3 residues is needed for proper histone H3 Lys36 methylation, histone acetylation, and repression of cryptic transcription. J. Biol. Chem. 285:11704-11713.
    • (2010) J. Biol. Chem. , vol.285 , pp. 11704-11713
    • Du, H.N.1    Briggs, S.D.2
  • 85
    • 54349105157 scopus 로고    scopus 로고
    • Histone H3 K36 methylation is mediated by a trans-histone methylation pathway involving an interaction between Set2 and histone H4
    • Du HN, Fingerman IM, Briggs SD. 2008. Histone H3 K36 methylation is mediated by a trans-histone methylation pathway involving an interaction between Set2 and histone H4. Genes Dev. 22:2786-2798.
    • (2008) Genes Dev. , vol.22 , pp. 2786-2798
    • Du, H.N.1    Fingerman, I.M.2    Briggs, S.D.3
  • 86
    • 71949086318 scopus 로고    scopus 로고
    • Set2-dependent K36 methylation is regulated by novel intratail interactions within H3
    • dependent K36 methylation is regulated by novel intratail interactions within H3. Mol. Cell. Biol. 29:6413-6426.
    • (2009) Mol. Cell. Biol. , vol.29 , pp. 6413-6426
    • Psathas, J.N.1    Zheng, S.2    Tan, S.3    Reese, J.C.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.