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Volumn 5, Issue , 2015, Pages

RapGene: A fast and accurate strategy for synthetic gene assembly in Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

DNA; ESCHERICHIA COLI PROTEIN; GREEN FLUORESCENT PROTEIN; GREEN FLUORESCENT PROTEIN, AEQUOREA VICTORIA; SPECTINOMYCIN; SYNTHETIC DNA; TRANSCRIPTION FACTOR GATA 1;

EID: 84931287741     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep11302     Document Type: Article
Times cited : (8)

References (36)
  • 1
    • 37349009767 scopus 로고    scopus 로고
    • Synthetic biology: Promises and challenges
    • Serrano, L. Synthetic biology: promises and challenges. Mol Syst Biol 3, 158 (2007).
    • (2007) Mol Syst Biol , vol.3 , pp. 158
    • Serrano, L.1
  • 2
    • 84897149238 scopus 로고    scopus 로고
    • Integrating biological redesign: Where synthetic biology came from and where it needs to go
    • Way, J. C., Collins, J. J., Keasling, J. D. , Silver, P. A. Integrating biological redesign: where synthetic biology came from and where it needs to go. Cell 157, 151-161 (2014).
    • (2014) Cell , vol.157 , pp. 151-161
    • Way, J.C.1    Collins, J.J.2    Keasling, J.D.3    Silver, P.A.4
  • 3
    • 46949091517 scopus 로고    scopus 로고
    • Refinement and standardization of synthetic biological parts and devices
    • Canton, B., Labno, A. , Endy, D. Refinement and standardization of synthetic biological parts and devices. Nat Biotechnol 26, 787-793 (2008).
    • (2008) Nat Biotechnol , vol.26 , pp. 787-793
    • Canton, B.1    Labno, A.2    Endy, D.3
  • 4
    • 84937816186 scopus 로고    scopus 로고
    • Recent advances in DNA assembly technologies
    • Chao, R., Yuan, Y. , Zhao, H. Recent advances in DNA assembly technologies. FEMS Yeast Res doi: 10.1111/1567-1364.12171 (2014).
    • (2014) FEMS Yeast Res
    • Chao, R.1    Yuan, Y.2    Zhao, H.3
  • 5
    • 79951501719 scopus 로고    scopus 로고
    • DNA assembly for synthetic biology: From parts to pathways and beyond
    • Ellis, T., Adie, T. , Baldwin, G. S. DNA assembly for synthetic biology: from parts to pathways and beyond. Integr Biol (Camb) 3, 109-118 (2011).
    • (2011) Integr Biol (Camb) , vol.3 , pp. 109-118
    • Ellis, T.1    Adie, T.2    Baldwin, G.S.3
  • 7
    • 84862793012 scopus 로고    scopus 로고
    • Available methods for assembling expression cassettes for synthetic biology
    • Wang, T. et al. Available methods for assembling expression cassettes for synthetic biology. Appl Microbiol Biotechnol 93, 1853-1863 (2012).
    • (2012) Appl Microbiol Biotechnol , vol.93 , pp. 1853-1863
    • Wang, T.1
  • 8
    • 0025085655 scopus 로고
    • Ligation-independent cloning of PCR products (LIC-PCR)
    • Aslanidis, C. , de Jong, P. J. Ligation-independent cloning of PCR products (LIC-PCR). Nucleic Acids Res 18, 6069-6074 (1990).
    • (1990) Nucleic Acids Res , vol.18 , pp. 6069-6074
    • Aslanidis, C.1    De Jong, P.J.2
  • 9
    • 0028784138 scopus 로고
    • Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides
    • Stemmer, W. P., Crameri, A., Ha, K. D., Brennan, T. M. , Heyneker, H. L. Single-step assembly of a gene and entire plasmid from large numbers of oligodeoxyribonucleotides. Gene 164, 49-53 (1995).
    • (1995) Gene , vol.164 , pp. 49-53
    • Stemmer, W.P.1    Crameri, A.2    Ha, K.D.3    Brennan, T.M.4    Heyneker, H.L.5
  • 10
    • 0032499868 scopus 로고    scopus 로고
    • Gene synthesis by a LCR-based approach: High-level production of leptin-L54 using synthetic gene in Escherichia coli
    • Au, L. C., Yang, F. Y., Yang, W. J., Lo, S. H. , Kao, C. F. Gene synthesis by a LCR-based approach: high-level production of leptin-L54 using synthetic gene in Escherichia coli. Biochem Biophys Res Commun 248, 200-203 (1998).
    • (1998) Biochem Biophys Res Commun , vol.248 , pp. 200-203
    • Au, L.C.1    Yang, F.Y.2    Yang, W.J.3    Lo, S.H.4    Kao, C.F.5
  • 11
    • 2142799564 scopus 로고    scopus 로고
    • Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: A novel method of primer design for high-fidelity assembly of longer gene sequences
    • Gao, X., Yo, P., Keith, A., Ragan, T. J. , Harris, T. K. Thermodynamically balanced inside-out (TBIO) PCR-based gene synthesis: a novel method of primer design for high-fidelity assembly of longer gene sequences. Nucleic Acids Res 31, e143 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. e143
    • Gao, X.1    Yo, P.2    Keith, A.3    Ragan, T.J.4    Harris, T.K.5
  • 12
    • 38349065060 scopus 로고    scopus 로고
    • Non-polymerase-cycling-assembly-based chemical gene synthesis: Strategies, methods, and progress
    • Xiong, A. S. et al. Non-polymerase-cycling-assembly-based chemical gene synthesis: strategies, methods, and progress. Biotechnol Adv 26, 121-134 (2008).
    • (2008) Biotechnol Adv , vol.26 , pp. 121-134
    • Xiong, A.S.1
  • 13
    • 78049387501 scopus 로고    scopus 로고
    • High-quality gene assembly directly from unpurified mixtures of microarray-synthesized oligonucleotides
    • Borovkov, A. Y. et al. High-quality gene assembly directly from unpurified mixtures of microarray-synthesized oligonucleotides. Nucleic Acids Res 38, e180 (2010).
    • (2010) Nucleic Acids Res , vol.38 , pp. e180
    • Borovkov, A.Y.1
  • 14
    • 8144226497 scopus 로고    scopus 로고
    • Total synthesis of long DNA sequences: Synthesis of a contiguous 32-kb polyketide synthase gene cluster
    • Kodumal, S. J. et al. Total synthesis of long DNA sequences: synthesis of a contiguous 32-kb polyketide synthase gene cluster. Proc Natl Acad Sci USA 101, 15573-15578 (2004).
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 15573-15578
    • Kodumal, S.J.1
  • 15
    • 0029285787 scopus 로고
    • PCR-mediated recombination and mutagenesis SOEing together tailor-made genes
    • Horton, R. M. PCR-mediated recombination and mutagenesis. SOEing together tailor-made genes. Mol Biotechnol 3, 93-99 (1995).
    • (1995) Mol Biotechnol , vol.3 , pp. 93-99
    • Horton, R.M.1
  • 16
    • 79957471219 scopus 로고    scopus 로고
    • Enzymatic assembly of overlapping DNA fragments
    • Gibson, D. G. Enzymatic assembly of overlapping DNA fragments. Methods Enzymol 498, 349-361 (2011).
    • (2011) Methods Enzymol , vol.498 , pp. 349-361
    • Gibson, D.G.1
  • 17
    • 79957524473 scopus 로고    scopus 로고
    • Assembly of BioBrick standard biological parts using three antibiotic assembly
    • Shetty, R., Lizarazo, M., Rettberg, R. , Knight, T. F. Assembly of BioBrick standard biological parts using three antibiotic assembly. Methods Enzymol 498, 311-326 (2011).
    • (2011) Methods Enzymol , vol.498 , pp. 311-326
    • Shetty, R.1    Lizarazo, M.2    Rettberg, R.3    Knight, T.F.4
  • 18
    • 77649305316 scopus 로고    scopus 로고
    • BglBricks: A flexible standard for biological part assembly
    • Anderson, J. C. et al. BglBricks: A flexible standard for biological part assembly. J Biol Eng 4, 1 (2010).
    • (2010) J Biol Eng , vol.4 , pp. 1
    • Anderson, J.C.1
  • 19
    • 84859829017 scopus 로고    scopus 로고
    • SLiCE: A novel bacterial cell extract-based DNA cloning method
    • Zhang, Y., Werling, U. , Edelmann, W. SLiCE: a novel bacterial cell extract-based DNA cloning method. Nucleic Acids Res 40, e55 (2012).
    • (2012) Nucleic Acids Res , vol.40 , pp. e55
    • Zhang, Y.1    Werling, U.2    Edelmann, W.3
  • 20
    • 33847608289 scopus 로고    scopus 로고
    • Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC
    • Li, M. Z. , Elledge, S. J. Harnessing homologous recombination in vitro to generate recombinant DNA via SLIC. Nat Methods 4, 251-256 (2007).
    • (2007) Nat Methods , vol.4 , pp. 251-256
    • Li, M.Z.1    Elledge, S.J.2
  • 21
    • 39449112551 scopus 로고    scopus 로고
    • Complete chemical synthesis assembly, and cloning of a Mycoplasma genitalium genome
    • Gibson, D. G. et al. Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science 319, 1215-1220 (2008).
    • (2008) Science , vol.319 , pp. 1215-1220
    • Gibson, D.G.1
  • 22
    • 84931276211 scopus 로고    scopus 로고
    • Genscript Second Edition Available at: Accessed: 15th January 2015
    • Genscript. Gene Synthesis Handbook. Second Edition (2014) Available at: http://www.genscript.com/gsfiles/techfiles/GSH-2edApr2014.pdf. (Accessed: 15th January 2015).
    • (2014) Gene Synthesis Handbook
  • 23
    • 73349139923 scopus 로고    scopus 로고
    • Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides
    • Gibson, D. G. Synthesis of DNA fragments in yeast by one-step assembly of overlapping oligonucleotides. Nucleic Acids Res 37, 6984-6990 (2009).
    • (2009) Nucleic Acids Res , vol.37 , pp. 6984-6990
    • Gibson, D.G.1
  • 24
    • 0031687168 scopus 로고    scopus 로고
    • Counterselectable markers: Untapped tools for bacterial genetics and pathogenesis
    • Reyrat, J. M., Pelicic, V., Gicquel, B. , Rappuoli, R. Counterselectable markers: untapped tools for bacterial genetics and pathogenesis. Infect Immun 66, 4011-4017 (1998).
    • (1998) Infect Immun , vol.66 , pp. 4011-4017
    • Reyrat, J.M.1    Pelicic, V.2    Gicquel, B.3    Rappuoli, R.4
  • 25
    • 0029968614 scopus 로고    scopus 로고
    • PGATA: A positive selection vector based on the toxicity of the transcription factor GATA-1 to bacteria
    • Trudel, P., Provost, S., Massie, B., Chartrand, P. , Wall, L. pGATA: a positive selection vector based on the toxicity of the transcription factor GATA-1 to bacteria. Biotechniques 20, 684-693 (1996).
    • (1996) Biotechniques , vol.20 , pp. 684-693
    • Trudel, P.1    Provost, S.2    Massie, B.3    Chartrand, P.4    Wall, L.5
  • 26
    • 0034667827 scopus 로고    scopus 로고
    • Analysis of the degradation of oligonucleotide strands during the freezing/thawing processes using MALDI-MS
    • Davis, D. L., O'Brien, E. P. , Bentzley, C. M. Analysis of the degradation of oligonucleotide strands during the freezing/thawing processes using MALDI-MS. Anal Chem 72, 5092-5096 (2000).
    • (2000) Anal Chem , vol.72 , pp. 5092-5096
    • Davis, D.L.1    O'Brien, E.P.2    Bentzley, C.M.3
  • 27
    • 34548217329 scopus 로고    scopus 로고
    • High preservation of DNA standards diluted in 50% glycerol
    • Schaudien, D., Baumgartner, W. , Herden, C. High preservation of DNA standards diluted in 50% glycerol. Diagn Mol Pathol 16, 153-157 (2007).
    • (2007) Diagn Mol Pathol , vol.16 , pp. 153-157
    • Schaudien, D.1    Baumgartner, W.2    Herden, C.3
  • 28
    • 84858075763 scopus 로고    scopus 로고
    • Error correction in gene synthesis technology
    • Ma, S., Saaem, I. , Tian, J. Error correction in gene synthesis technology. Trends Biotechnol 30, 147-154 (2012).
    • (2012) Trends Biotechnol , vol.30 , pp. 147-154
    • Ma, S.1    Saaem, I.2    Tian, J.3
  • 29
    • 84866171028 scopus 로고    scopus 로고
    • One-step sequence-and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies
    • Jeong, J. Y. et al. One-step sequence-and ligation-independent cloning as a rapid and versatile cloning method for functional genomics studies. Appl Environ Microbiol 78, 5440-5443 (2012).
    • (2012) Appl Environ Microbiol , vol.78 , pp. 5440-5443
    • Jeong, J.Y.1
  • 30
    • 70449522250 scopus 로고    scopus 로고
    • Gene synthesis by integrated polymerase chain assembly and PCR amplification using a high-speed thermocycler
    • TerMaat, J. R., Pienaar, E., Whitney, S. E., Mamedov, T. G. , Subramanian, A. Gene synthesis by integrated polymerase chain assembly and PCR amplification using a high-speed thermocycler. J Microbiol Methods 79, 295-300 (2009).
    • (2009) J Microbiol Methods , vol.79 , pp. 295-300
    • Termaat, J.R.1    Pienaar, E.2    Whitney, S.E.3    Mamedov, T.G.4    Subramanian, A.5
  • 31
    • 0035135741 scopus 로고    scopus 로고
    • Scaling up the ligase chain reaction-based approach to gene synthesis
    • Chalmers, F. M. , Curnow, K. M. Scaling up the ligase chain reaction-based approach to gene synthesis. Biotechniques 30, 249-252 (2001).
    • (2001) Biotechniques , vol.30 , pp. 249-252
    • Chalmers, F.M.1    Curnow, K.M.2
  • 32
    • 50549090249 scopus 로고    scopus 로고
    • Targeted development of registries of biological parts
    • Peccoud, J. et al. Targeted development of registries of biological parts. PLoS One 3, e2671 (2008).
    • (2008) PLoS One , vol.3 , pp. e2671
    • Peccoud, J.1
  • 34
    • 0347364647 scopus 로고    scopus 로고
    • Generating a synthetic genome by whole genome assembly: X174 bacteriophage from synthetic oligonucleotides
    • Smith, H. O., Hutchison, C. A., 3rd, Pfannkoch, C. , Venter, J. C. Generating a synthetic genome by whole genome assembly: ?X174 bacteriophage from synthetic oligonucleotides. Proc Natl Acad Sci USA 100, 15440-15445 (2003).
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 15440-15445
    • Smith, H.O.1    Hutchison, C.A.2    Pfannkoch, C.3    Venter, J.C.4
  • 35
    • 0028777967 scopus 로고
    • Aequorea green fluorescent protein Expression of the gene and fluorescence characteristics of the recombinant protein
    • Inouye, S. , Tsuji, F. I. Aequorea green fluorescent protein. Expression of the gene and fluorescence characteristics of the recombinant protein. FEBS Lett 341, 277-280 (1994).
    • (1994) FEBS Lett , vol.341 , pp. 277-280
    • Inouye, S.1    Tsuji, F.I.2
  • 36
    • 3242888495 scopus 로고    scopus 로고
    • Gene2Oligo: Oligonucleotide design for in vitro gene synthesis
    • Rouillard, J. M. et al. Gene2Oligo: oligonucleotide design for in vitro gene synthesis. Nucleic Acids Res 32, W176-180 (2004).
    • (2004) Nucleic Acids Res , vol.32 , pp. W176-180
    • Rouillard, J.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.