-
1
-
-
12744263064
-
Comparison of splice sites in mammals and chicken
-
Abril JF, Castelo R, Guigo R. 2005. Comparison of splice sites in mammals and chicken. Genome Res. 15:111-119.
-
(2005)
Genome Res.
, vol.15
, pp. 111-119
-
-
Abril, J.F.1
Castelo, R.2
Guigo, R.3
-
2
-
-
60349097125
-
The scale of divergence: A phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus
-
Adamowicz SJ, Petrusek A, Colbourne JK, Hebert PD, Witt JD. 2009. The scale of divergence: a phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus. Mol Phylogenet Evol. 50:423-436.
-
(2009)
Mol Phylogenet Evol.
, vol.50
, pp. 423-436
-
-
Adamowicz, S.J.1
Petrusek, A.2
Colbourne, J.K.3
Hebert, P.D.4
Witt, J.D.5
-
3
-
-
77949461898
-
U12 type introns were lost at multiple occasions during evolution
-
Bartschat S, Samuelsson T. 2010. U12 type introns were lost at multiple occasions during evolution. BMC Genomics 11:106.
-
(2010)
BMC Genomics
, vol.11
, pp. 106
-
-
Bartschat, S.1
Samuelsson, T.2
-
4
-
-
33644603687
-
The rise and falls of introns
-
Belshaw R, Bensasson D. 2006. The rise and falls of introns. Heredity 96:208-213.
-
(2006)
Heredity
, vol.96
, pp. 208-213
-
-
Belshaw, R.1
Bensasson, D.2
-
5
-
-
0344622123
-
Spliced segments at the 50 terminus of adenovirus 2 late mRNA
-
Berget SM, Moore C, Sharp PA. 1977. Spliced segments at the 50 terminus of adenovirus 2 late mRNA. Proc Natl Acad Sci USA. 74:3171-3175.
-
(1977)
Proc Natl Acad Sci U S A
, vol.74
, pp. 3171-3175
-
-
Berget, S.M.1
Moore, C.2
Sharp, P.A.3
-
6
-
-
0037108322
-
A ubiquitous and conserved signal for RNA localization in chordates
-
Betley JN, Frith MC, Graber JH, Choo S, Deshler JO. 2002. A ubiquitous and conserved signal for RNA localization in chordates. Curr Biol. 12:1756-1761.
-
(2002)
Curr Biol.
, vol.12
, pp. 1756-1761
-
-
Betley, J.N.1
Frith, M.C.2
Graber, J.H.3
Choo, S.4
Deshler, J.O.5
-
7
-
-
0032247416
-
Evolutionary fates and origins of U12-type introns
-
Burge CB, Padgett RA, Sharp PA. 1998. Evolutionary fates and origins of U12-type introns. Mol Cell. 2:773-785.
-
(1998)
Mol Cell.
, vol.2
, pp. 773-785
-
-
Burge, C.B.1
Padgett, R.A.2
Sharp, P.A.3
-
8
-
-
0034326362
-
Analysis of canonical and noncanonical splice sites in mammalian genomes
-
Burset M, Seledtsov IA, Solovyev VV. 2000. Analysis of canonical and noncanonical splice sites in mammalian genomes. Nucleic Acids Res. 28:4364-4375.
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 4364-4375
-
-
Burset, M.1
Seledtsov, I.A.2
Solovyev, V.V.3
-
9
-
-
1942469356
-
Comparative analysis detects dependencies among the 50 splice-site positions
-
Carmel I, Tal S, Vig I, Ast G. 2004. Comparative analysis detects dependencies among the 50 splice-site positions. RNA 10:828-840.
-
(2004)
RNA
, vol.10
, pp. 828-840
-
-
Carmel, I.1
Tal, S.2
Vig, I.3
Ast, G.4
-
10
-
-
34347398058
-
Evolutionarily conserved genes preferentially accumulate introns
-
Carmel L, Rogozin IB, Wolf YI, Koonin EV. 2007a. Evolutionarily conserved genes preferentially accumulate introns. Genome Res. 17:1045-1050.
-
(2007)
Genome Res.
, vol.17
, pp. 1045-1050
-
-
Carmel, L.1
Rogozin, I.B.2
Wolf, Y.I.3
Koonin, E.V.4
-
12
-
-
34347389905
-
Three distinct modes of intron dynamics in the evolution of eukaryotes
-
Carmel L, Wolf YI, Rogozin IB, Koonin EV. 2007. Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res. 17:1034-1044.
-
(2007)
Genome Res.
, vol.17
, pp. 1034-1044
-
-
Carmel, L.1
Wolf, Y.I.2
Rogozin, I.B.3
Koonin, E.V.4
-
13
-
-
0030750730
-
Evidence that U5 snRNP recognizes the 30 splice site for catalytic step II in mammals
-
Chiara MD, Palandjian L, Feld Kramer R, Reed R. 1997. Evidence that U5 snRNP recognizes the 30 splice site for catalytic step II in mammals. EMBO J. 16:4746-4759.
-
(1997)
EMBO J
, vol.16
, pp. 4746-4759
-
-
Chiara, M.D.1
Palandjian, L.2
Feld Kramer, R.3
Reed, R.4
-
14
-
-
0017688583
-
An amazing sequence arrangement at the 50 ends of adenovirus 2 messenger RNA
-
Chow LT, Gelinas RE, Broker TR, Roberts RJ. 1977. An amazing sequence arrangement at the 50 ends of adenovirus 2 messenger RNA. Cell 12:1-8.
-
(1977)
Cell
, vol.12
, pp. 1-8
-
-
Chow, L.T.1
Gelinas, R.E.2
Broker, T.R.3
Roberts, R.J.4
-
15
-
-
79551632781
-
The ecoresponsive genome of Daphnia pulex
-
Colbourne JK, et al. 2011. The ecoresponsive genome of Daphnia pulex. Science 331:555-561.
-
(2011)
Science
, vol.331
, pp. 555-561
-
-
Colbourne, J.K.1
-
16
-
-
16344385067
-
Complex spliceosomal organization ancestral to extant eukaryotes
-
Collins L, Penny D. 2005. Complex spliceosomal organization ancestral to extant eukaryotes. Mol Biol Evol. 22:1053-1066.
-
(2005)
Mol Biol Evol.
, vol.22
, pp. 1053-1066
-
-
Collins, L.1
Penny, D.2
-
17
-
-
33845982198
-
Characterization of intron loss events in mammals
-
Coulombe-Huntington J, Majewski J. 2007a. Characterization of intron loss events in mammals. Genome Res. 17:23-32.
-
(2007)
Genome Res.
, vol.17
, pp. 23-32
-
-
Coulombe-Huntington, J.1
Majewski, J.2
-
19
-
-
0034595010
-
The importance of repairing stalled replication forks
-
Cox MM, et al. 2000. The importance of repairing stalled replication forks. Nature 404:37-41.
-
(2000)
Nature
, vol.404
, pp. 37-41
-
-
Cox, M.M.1
-
20
-
-
84876036998
-
Intron gains and losses in the evolution of Fusarium and Cryptococcus fungi
-
Croll D, McDonald BA. 2012. Intron gains and losses in the evolution of Fusarium and Cryptococcus fungi. Genome Biol Evol. 4:1148-1161.
-
(2012)
Genome Biol Evol.
, vol.4
, pp. 1148-1161
-
-
Croll, D.1
McDonald, B.A.2
-
21
-
-
46249111264
-
Malin: Maximum likelihood analysis of intron evolution in eukaryotes
-
Csuros M. 2008. Malin: maximum likelihood analysis of intron evolution in eukaryotes. Bioinformatics 24:1538-1539.
-
(2008)
Bioinformatics
, vol.24
, pp. 1538-1539
-
-
Csuros, M.1
-
22
-
-
80053442983
-
A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes
-
Csuros M, Rogozin IB, Koonin EV. 2011. A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes. PLoS Comput Biol. 7:e1002150.
-
(2011)
PLoS Comput Biol.
, vol.7
, pp. e1002150
-
-
Csuros, M.1
Rogozin, I.B.2
Koonin, E.V.3
-
23
-
-
44349155377
-
Computational screen for spliceosomal RNA genes AIDS in defining the phylogenetic distribution of major and minor spliceosomal components
-
Davila Lopez M, Rosenblad MA, Samuelsson T. 2008. Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components. Nucleic Acids Res. 36:3001-3010.
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 3001-3010
-
-
Davila Lopez, M.1
Rosenblad, M.A.2
Samuelsson, T.3
-
24
-
-
78649705889
-
Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
-
Denoeud F, et al. 2010. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science 330:1381-1385.
-
(2010)
Science
, vol.330
, pp. 1381-1385
-
-
Denoeud, F.1
-
25
-
-
0027446476
-
A role for reverse transcripts in gene conversion
-
Derr LK, Strathern JN. 1993. A role for reverse transcripts in gene conversion. Nature 361:170-173.
-
(1993)
Nature
, vol.361
, pp. 170-173
-
-
Derr, L.K.1
Strathern, J.N.2
-
26
-
-
38649110663
-
BEAST: Bayesian evolutionary analysis by sampling trees
-
Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 7:214.
-
(2007)
BMC Evol Biol.
, vol.7
, pp. 214
-
-
Drummond, A.J.1
Rambaut, A.2
-
28
-
-
0037026523
-
The U1 snRNP protein U1C recognizes the 50 splice site in the absence of base pairing
-
Du H, Rosbash M. 2002. The U1 snRNP protein U1C recognizes the 50 splice site in the absence of base pairing. Nature 419:86-90.
-
(2002)
Nature
, vol.419
, pp. 86-90
-
-
Du, H.1
Rosbash, M.2
-
29
-
-
0034496840
-
Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
-
Edwards SV, Beerli P. 2000. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54:1839-1854.
-
(2000)
Evolution
, vol.54
, pp. 1839-1854
-
-
Edwards, S.V.1
Beerli, P.2
-
30
-
-
76749130220
-
Nonsensemediated decay enables intron gain in Drosophila
-
Farlow A, Meduri E, Dolezal M, Hua L, Schlotterer C. 2010. Nonsensemediated decay enables intron gain in Drosophila. PLoS Genet. 6:e1000819.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1000819
-
-
Farlow, A.1
Meduri, E.2
Dolezal, M.3
Hua, L.4
Schlotterer, C.5
-
31
-
-
78650616014
-
DNA double-strand break repair and the evolution of intron density
-
Farlow A, Meduri E, Schlotterer C. 2011. DNA double-strand break repair and the evolution of intron density. Trends Genet. 27:1-6.
-
(2011)
Trends Genet.
, vol.27
, pp. 1-6
-
-
Farlow, A.1
Meduri, E.2
Schlotterer, C.3
-
32
-
-
80053132716
-
Multiple reference genomes and transcriptomes for Arabidopsis thaliana
-
Gan X, et al. 2011. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477:419-423.
-
(2011)
Nature
, vol.477
, pp. 419-423
-
-
Gan, X.1
-
33
-
-
73949123826
-
Ubiquitous internal gene duplication and intron creation in eukaryotes
-
Gao X, Lynch M. 2009. Ubiquitous internal gene duplication and intron creation in eukaryotes. Proc Natl Acad Sci USA. 106:20818-20823.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 20818-20823
-
-
Gao, X.1
Lynch, M.2
-
34
-
-
0017688797
-
Evidence from UV transcription mapping in HeLa cells that heterogeneous nuclear RNA is the messenger RNA precursor
-
Goldberg S, Schwartz H, Darnell JE Jr. 1977. Evidence from UV transcription mapping in HeLa cells that heterogeneous nuclear RNA is the messenger RNA precursor. Proc Natl Acad Sci USA. 74:4520-4523.
-
(1977)
Proc Natl Acad Sci U S A
, vol.74
, pp. 4520-4523
-
-
Goldberg, S.1
Schwartz, H.2
Darnell, J.E.3
-
35
-
-
55449085777
-
Numt-mediated double-strand break repair mitigates deletions during primate genome evolution
-
Hazkani-Covo E, Covo S. 2008. Numt-mediated double-strand break repair mitigates deletions during primate genome evolution. PLoS Genet. 4:e1000237.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000237
-
-
Hazkani-Covo, E.1
Covo, S.2
-
36
-
-
0033972791
-
The balance sheet for transcription: An analysis of nuclear RNA metabolism in mammalian cells
-
Jackson DA, Pombo A, Iborra F. 2000. The balance sheet for transcription: an analysis of nuclear RNA metabolism in mammalian cells. FASEB J. 14:242-254.
-
(2000)
FASEB J
, vol.14
, pp. 242-254
-
-
Jackson, D.A.1
Pombo, A.2
Iborra, F.3
-
37
-
-
38349125022
-
Translational control of intron splicing in eukaryotes
-
Jaillon O, et al. 2008. Translational control of intron splicing in eukaryotes. Nature 451:359-362.
-
(2008)
Nature
, vol.451
, pp. 359-362
-
-
Jaillon, O.1
-
38
-
-
67349149631
-
A comparative approach shows differences in patterns of numt insertion during hominoid evolution
-
Jensen-Seaman MI, Wildschutte JH, Soto-Calderon ID, Anthony NM. 2009. A comparative approach shows differences in patterns of numt insertion during hominoid evolution. J Mol Evol. 68:688-699.
-
(2009)
J Mol Evol.
, vol.68
, pp. 688-699
-
-
Jensen-Seaman, M.I.1
Wildschutte, J.H.2
Soto-Calderon, I.D.3
Anthony, N.M.4
-
39
-
-
69249211050
-
Intron-dominated genomes of early ancestors of eukaryotes
-
Koonin EV. 2009. Intron-dominated genomes of early ancestors of eukaryotes. J Hered. 100:618-623.
-
(2009)
J Hered.
, vol.100
, pp. 618-623
-
-
Koonin, E.V.1
-
40
-
-
0032715175
-
Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
-
table of contents
-
Kuzminov A. 1999. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol Mol Biol Rev. 63:751-813; table of contents.
-
(1999)
Microbiol Mol Biol Rev.
, vol.63
, pp. 751-813
-
-
Kuzminov, A.1
-
41
-
-
74049093136
-
Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library
-
Lam HY, et al. 2010. Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library. Nat Biotechnol. 28:47-55.
-
(2010)
Nat Biotechnol.
, vol.28
, pp. 47-55
-
-
Lam, H.Y.1
-
42
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
-
43
-
-
0035476520
-
A computational scan for U12-dependent introns in the human genome sequence
-
Levine A, Durbin R. 2001. A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res. 29:4006-4013.
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4006-4013
-
-
Levine, A.1
Durbin, R.2
-
45
-
-
70849137211
-
Extensive, recent intron gains in Daphnia populations
-
Li W, Tucker AE, Sung W, Thomas WK, Lynch M. 2009. Extensive, recent intron gains in Daphnia populations. Science 326:1260-1262.
-
(2009)
Science
, vol.326
, pp. 1260-1262
-
-
Li, W.1
Tucker, A.E.2
Sung, W.3
Thomas, W.K.4
Lynch, M.5
-
46
-
-
65649117685
-
DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
-
Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
-
(2009)
Bioinformatics
, vol.25
, pp. 1451-1452
-
-
Librado, P.1
Rozas, J.2
-
48
-
-
33745088890
-
Intron gain and loss in segmentally duplicated genes in rice
-
Lin H, Zhu W, Silva JC, Gu X, Buell CR. 2006. Intron gain and loss in segmentally duplicated genes in rice. Genome Biol. 7:R41.
-
(2006)
Genome Biol.
, vol.7
, pp. R41
-
-
Lin, H.1
Zhu, W.2
Silva, J.C.3
Gu, X.4
Buell, C.R.5
-
49
-
-
0037062440
-
Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection
-
Llopart A, Comeron JM, Brunet FG, Lachaise D, Long M. 2002. Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci USA. 99:8121-8126.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 8121-8126
-
-
Llopart, A.1
Comeron, J.M.2
Brunet, F.G.3
Lachaise, D.4
Long, M.5
-
50
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long Q, et al. 2013. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat Genet. 45:884-890.
-
(2013)
Nat Genet.
, vol.45
, pp. 884-890
-
-
Long, Q.1
-
51
-
-
0037197986
-
Intron evolution as a population-genetic process
-
Lynch M. 2002. Intron evolution as a population-genetic process. Proc Natl Acad Sci USA. 99:6118-6123.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 6118-6123
-
-
Lynch, M.1
-
53
-
-
0033042828
-
The quantitative and molecular genetic architecture of a subdivided species
-
Lynch M, et al. 1999. The quantitative and molecular genetic architecture of a subdivided species. Evolution 53:2016-2016.
-
(1999)
Evolution
, vol.53
, pp. 2016-2016
-
-
Lynch, M.1
-
55
-
-
24644502657
-
From birth to death: The complex lives of eukaryotic mRNAs
-
Moore MJ. 2005. From birth to death: the complex lives of eukaryotic mRNAs. Science 309:1514-1518.
-
(2005)
Science
, vol.309
, pp. 1514-1518
-
-
Moore, M.J.1
-
56
-
-
34848894621
-
Genomic minimalism in the early diverging intestinal parasite Giardia lamblia
-
Morrison HG, et al. 2007. Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science 317:1921-1926.
-
(2007)
Science
, vol.317
, pp. 1921-1926
-
-
Morrison, H.G.1
-
57
-
-
0005814023
-
Mathematical model for studying genetic variation in terms of restriction endonucleases
-
Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA. 76:5269-5273.
-
(1979)
Proc Natl Acad Sci U S A
, vol.76
, pp. 5269-5273
-
-
Nei, M.1
Li, W.H.2
-
58
-
-
84872246297
-
New maximum likelihood estimators for eukaryotic intron evolution
-
Nguyen HD, Yoshihama M, Kenmochi N. 2005. New maximum likelihood estimators for eukaryotic intron evolution. PLoS Comput Biol. 1:e79.
-
(2005)
PLoS Comput Biol.
, vol.1
, pp. e79
-
-
Nguyen, H.D.1
Yoshihama, M.2
Kenmochi, N.3
-
59
-
-
52449091825
-
Intron presence-absence polymorphisms in Daphnia
-
Omilian AR, Scofield DG, Lynch M. 2008. Intron presence-absence polymorphisms in Daphnia. Mol Biol Evol. 25:2129-2139.
-
(2008)
Mol Biol Evol.
, vol.25
, pp. 2129-2139
-
-
Omilian, A.R.1
Scofield, D.G.2
Lynch, M.3
-
60
-
-
17844407446
-
Evolutionary history of contagious asexuality in Daphnia pulex
-
Paland S, Colbourne JK, Lynch M. 2005. Evolutionary history of contagious asexuality in Daphnia pulex. Evolution 59:800-813.
-
(2005)
Evolution
, vol.59
, pp. 800-813
-
-
Paland, S.1
Colbourne, J.K.2
Lynch, M.3
-
61
-
-
33144483078
-
Transitions to asexuality result in excess amino acid substitutions
-
Paland S, Lynch M. 2006. Transitions to asexuality result in excess amino acid substitutions. Science 311:990-992.
-
(2006)
Science
, vol.311
, pp. 990-992
-
-
Paland, S.1
Lynch, M.2
-
62
-
-
0042921194
-
Remarkable interkingdom conservation of intron positions and massive, lineagespecific intron loss and gain in eukaryotic evolution
-
Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV. 2003. Remarkable interkingdom conservation of intron positions and massive, lineagespecific intron loss and gain in eukaryotic evolution. Curr Biol. 13:1512-1517.
-
(2003)
Curr Biol.
, vol.13
, pp. 1512-1517
-
-
Rogozin, I.B.1
Wolf, Y.I.2
Sorokin, A.V.3
Mirkin, B.G.4
Koonin, E.V.5
-
63
-
-
0025876808
-
Who's on first? The U1 snRNP-50 splice site interaction and splicing
-
Rosbash M, Seraphin B. 1991. Who's on first? The U1 snRNP-50 splice site interaction and splicing. Trends Biochem Sci. 16:187-190.
-
(1991)
Trends Biochem Sci.
, vol.16
, pp. 187-190
-
-
Rosbash, M.1
Seraphin, B.2
-
64
-
-
33747188649
-
Intron-rich ancestors
-
Roy SW. 2006. Intron-rich ancestors. Trends Genet. 22:468-471.
-
(2006)
Trends Genet.
, vol.22
, pp. 468-471
-
-
Roy, S.W.1
-
66
-
-
17644379051
-
Rates of intron loss and gain: Implications for early eukaryotic evolution
-
Roy SW, Gilbert W. 2005b. Rates of intron loss and gain: implications for early eukaryotic evolution. Proc Natl Acad Sci USA. 102:5773-5778.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 5773-5778
-
-
Roy, S.W.1
Gilbert, W.2
-
67
-
-
34547688982
-
A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain
-
Roy SW, Penny D. 2007. A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain. Mol Biol Evol. 24:1447-1457.
-
(2007)
Mol Biol Evol.
, vol.24
, pp. 1447-1457
-
-
Roy, S.W.1
Penny, D.2
-
68
-
-
33746001953
-
A high density of ancient spliceosomal introns in oxymonad excavates
-
Slamovits CH, Keeling PJ. 2006. A high density of ancient spliceosomal introns in oxymonad excavates. BMC Evol Biol. 6:34.
-
(2006)
BMC Evol Biol.
, vol.6
, pp. 34
-
-
Slamovits, C.H.1
Keeling, P.J.2
-
69
-
-
42949174108
-
Comparative genomic analysis of fungal genomes reveals intron-rich ancestors
-
Stajich JE, Dietrich FS, Roy SW. 2007. Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biol. 8:R223.
-
(2007)
Genome Biol.
, vol.8
, pp. R223
-
-
Stajich, J.E.1
Dietrich, F.S.2
Roy, S.W.3
-
70
-
-
47249101070
-
Where in the cell is the minor spliceosome?
-
Steitz JA, et al. 2008. Where in the cell is the minor spliceosome?. Proc Natl Acad Sci USA. 105:8485-8486.
-
(2008)
Proc Natl Acad Sci U S A
, vol.105
, pp. 8485-8486
-
-
Steitz, J.A.1
-
72
-
-
0021066244
-
Evolutionary relationship of DNA sequences in finite populations
-
Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460.
-
(1983)
Genetics
, vol.105
, pp. 437-460
-
-
Tajima, F.1
-
73
-
-
0022390691
-
Gene genealogy and variance of interpopulational nucleotide differences
-
Takahata N, Nei M. 1985. Gene genealogy and variance of interpopulational nucleotide differences. Genetics 110:325-344.
-
(1985)
Genetics
, vol.110
, pp. 325-344
-
-
Takahata, N.1
Nei, M.2
-
74
-
-
79957613599
-
MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
-
(2011)
Mol Biol Evol.
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
-
75
-
-
4544244620
-
Insertion of spliceosomal introns in proto-splice sites: The case of secretory signal peptides
-
Tordai H, Patthy L. 2004. Insertion of spliceosomal introns in proto-splice sites: the case of secretory signal peptides. FEBS Lett. 575:109-111.
-
(2004)
FEBS Lett.
, vol.575
, pp. 109-111
-
-
Tordai, H.1
Patthy, L.2
-
76
-
-
82955233922
-
Evidence for extensive recent intron transposition in closely related fungi
-
Torriani SF, Stukenbrock EH, Brunner PC, McDonald BA, Croll D. 2011. Evidence for extensive recent intron transposition in closely related fungi. Curr Biol. 21:2017-2022.
-
(2011)
Curr Biol.
, vol.21
, pp. 2017-2022
-
-
Torriani, S.F.1
Stukenbrock, E.H.2
Brunner, P.C.3
McDonald, B.A.4
Croll, D.5
-
77
-
-
84884638276
-
Populationgenomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex
-
Tucker AE, Ackerman MS, Eads BD, Xu S, Lynch M. 2013. Populationgenomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex. Proc Natl Acad Sci USA. 110:15740-15745.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 15740-15745
-
-
Tucker, A.E.1
Ackerman, M.S.2
Eads, B.D.3
Xu, S.4
Lynch, M.5
-
79
-
-
0028960809
-
A novel role for a U5 snRNP protein in 30 splice site selection
-
Umen JG, Guthrie C. 1995. A novel role for a U5 snRNP protein in 30 splice site selection. Genes Dev. 9:855-868.
-
(1995)
Genes Dev.
, vol.9
, pp. 855-868
-
-
Umen, J.G.1
Guthrie, C.2
-
80
-
-
84863723204
-
Birth of new spliceosomal introns in fungi by multiplication of introner-like elements
-
Van Der Burgt A, Severing E, De Wit PJ, Collemare J. 2012. Birth of new spliceosomal introns in fungi by multiplication of introner-like elements. Curr Biol. 22:1260-1265.
-
(2012)
Curr Biol.
, vol.22
, pp. 1260-1265
-
-
Van Der Burgt, A.1
Severing, E.2
De Wit, P.J.3
Collemare, J.4
-
81
-
-
77949559979
-
An ancient mechanism for splicing control: U11 snRNP as an activator of alternative splicing
-
Verbeeren J, et al. 2010. An ancient mechanism for splicing control: U11 snRNP as an activator of alternative splicing. Mol Cell. 37:821-833.
-
(2010)
Mol Cell.
, vol.37
, pp. 821-833
-
-
Verbeeren, J.1
-
82
-
-
0242300088
-
Endogenous DNA double-strand breaks: Production, fidelity of repair, and induction of cancer
-
Vilenchik MM, Knudson AG. 2003. Endogenous DNA double-strand breaks: production, fidelity of repair, and induction of cancer. Proc Natl Acad Sci USA. 100:12871-12876.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 12871-12876
-
-
Vilenchik, M.M.1
Knudson, A.G.2
-
83
-
-
84863627716
-
Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in mammalian intron size expansion
-
Wang D, Su Y, Wang X, Lei H, Yu J. 2012. Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in mammalian intron size expansion. Evol Bioinform Online. 8:301-319.
-
(2012)
Evol Bioinform Online.
, vol.8
, pp. 301-319
-
-
Wang, D.1
Su, Y.2
Wang, X.3
Lei, H.4
Yu, J.5
-
84
-
-
83655182609
-
Mechanisms of intron gain and loss in Drosophila
-
Yenerall P, Krupa B, Zhou L. 2011. Mechanisms of intron gain and loss in Drosophila. BMC Evol Biol. 11:364.
-
(2011)
BMC Evol Biol.
, vol.11
, pp. 364
-
-
Yenerall, P.1
Krupa, B.2
Zhou, L.3
-
85
-
-
51949111100
-
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
-
Zhang C, et al. 2008. Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes Dev. 22:2550-2563.
-
(2008)
Genes Dev.
, vol.22
, pp. 2550-2563
-
-
Zhang, C.1
-
86
-
-
78649999037
-
Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi
-
Zhang LY, Yang YF, Niu DK. 2010. Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi. J Mol Evol. 71:364-373.
-
(2010)
J Mol Evol.
, vol.71
, pp. 364-373
-
-
Zhang, L.Y.1
Yang, Y.F.2
Niu, D.K.3
|