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Volumn 6, Issue 9, 2014, Pages 2218-2234

Characterization of newly gained introns in Daphnia populations

Author keywords

Age estimate; Daphnia; Double strand breaks; New intron

Indexed keywords

ALLELE; ANIMAL; BIOLOGICAL MODEL; CLASSIFICATION; DAPHNIA; GENETIC VARIABILITY; GENETICS; GENOME; INTRON; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY;

EID: 84930368318     PISSN: None     EISSN: 17596653     Source Type: Journal    
DOI: 10.1093/gbe/evu174     Document Type: Article
Times cited : (15)

References (86)
  • 1
    • 12744263064 scopus 로고    scopus 로고
    • Comparison of splice sites in mammals and chicken
    • Abril JF, Castelo R, Guigo R. 2005. Comparison of splice sites in mammals and chicken. Genome Res. 15:111-119.
    • (2005) Genome Res. , vol.15 , pp. 111-119
    • Abril, J.F.1    Castelo, R.2    Guigo, R.3
  • 2
    • 60349097125 scopus 로고    scopus 로고
    • The scale of divergence: A phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus
    • Adamowicz SJ, Petrusek A, Colbourne JK, Hebert PD, Witt JD. 2009. The scale of divergence: a phylogenetic appraisal of intercontinental allopatric speciation in a passively dispersed freshwater zooplankton genus. Mol Phylogenet Evol. 50:423-436.
    • (2009) Mol Phylogenet Evol. , vol.50 , pp. 423-436
    • Adamowicz, S.J.1    Petrusek, A.2    Colbourne, J.K.3    Hebert, P.D.4    Witt, J.D.5
  • 3
    • 77949461898 scopus 로고    scopus 로고
    • U12 type introns were lost at multiple occasions during evolution
    • Bartschat S, Samuelsson T. 2010. U12 type introns were lost at multiple occasions during evolution. BMC Genomics 11:106.
    • (2010) BMC Genomics , vol.11 , pp. 106
    • Bartschat, S.1    Samuelsson, T.2
  • 4
    • 33644603687 scopus 로고    scopus 로고
    • The rise and falls of introns
    • Belshaw R, Bensasson D. 2006. The rise and falls of introns. Heredity 96:208-213.
    • (2006) Heredity , vol.96 , pp. 208-213
    • Belshaw, R.1    Bensasson, D.2
  • 5
    • 0344622123 scopus 로고
    • Spliced segments at the 50 terminus of adenovirus 2 late mRNA
    • Berget SM, Moore C, Sharp PA. 1977. Spliced segments at the 50 terminus of adenovirus 2 late mRNA. Proc Natl Acad Sci USA. 74:3171-3175.
    • (1977) Proc Natl Acad Sci U S A , vol.74 , pp. 3171-3175
    • Berget, S.M.1    Moore, C.2    Sharp, P.A.3
  • 6
    • 0037108322 scopus 로고    scopus 로고
    • A ubiquitous and conserved signal for RNA localization in chordates
    • Betley JN, Frith MC, Graber JH, Choo S, Deshler JO. 2002. A ubiquitous and conserved signal for RNA localization in chordates. Curr Biol. 12:1756-1761.
    • (2002) Curr Biol. , vol.12 , pp. 1756-1761
    • Betley, J.N.1    Frith, M.C.2    Graber, J.H.3    Choo, S.4    Deshler, J.O.5
  • 7
    • 0032247416 scopus 로고    scopus 로고
    • Evolutionary fates and origins of U12-type introns
    • Burge CB, Padgett RA, Sharp PA. 1998. Evolutionary fates and origins of U12-type introns. Mol Cell. 2:773-785.
    • (1998) Mol Cell. , vol.2 , pp. 773-785
    • Burge, C.B.1    Padgett, R.A.2    Sharp, P.A.3
  • 8
    • 0034326362 scopus 로고    scopus 로고
    • Analysis of canonical and noncanonical splice sites in mammalian genomes
    • Burset M, Seledtsov IA, Solovyev VV. 2000. Analysis of canonical and noncanonical splice sites in mammalian genomes. Nucleic Acids Res. 28:4364-4375.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 4364-4375
    • Burset, M.1    Seledtsov, I.A.2    Solovyev, V.V.3
  • 9
    • 1942469356 scopus 로고    scopus 로고
    • Comparative analysis detects dependencies among the 50 splice-site positions
    • Carmel I, Tal S, Vig I, Ast G. 2004. Comparative analysis detects dependencies among the 50 splice-site positions. RNA 10:828-840.
    • (2004) RNA , vol.10 , pp. 828-840
    • Carmel, I.1    Tal, S.2    Vig, I.3    Ast, G.4
  • 10
    • 34347398058 scopus 로고    scopus 로고
    • Evolutionarily conserved genes preferentially accumulate introns
    • Carmel L, Rogozin IB, Wolf YI, Koonin EV. 2007a. Evolutionarily conserved genes preferentially accumulate introns. Genome Res. 17:1045-1050.
    • (2007) Genome Res. , vol.17 , pp. 1045-1050
    • Carmel, L.1    Rogozin, I.B.2    Wolf, Y.I.3    Koonin, E.V.4
  • 12
    • 34347389905 scopus 로고    scopus 로고
    • Three distinct modes of intron dynamics in the evolution of eukaryotes
    • Carmel L, Wolf YI, Rogozin IB, Koonin EV. 2007. Three distinct modes of intron dynamics in the evolution of eukaryotes. Genome Res. 17:1034-1044.
    • (2007) Genome Res. , vol.17 , pp. 1034-1044
    • Carmel, L.1    Wolf, Y.I.2    Rogozin, I.B.3    Koonin, E.V.4
  • 13
    • 0030750730 scopus 로고    scopus 로고
    • Evidence that U5 snRNP recognizes the 30 splice site for catalytic step II in mammals
    • Chiara MD, Palandjian L, Feld Kramer R, Reed R. 1997. Evidence that U5 snRNP recognizes the 30 splice site for catalytic step II in mammals. EMBO J. 16:4746-4759.
    • (1997) EMBO J , vol.16 , pp. 4746-4759
    • Chiara, M.D.1    Palandjian, L.2    Feld Kramer, R.3    Reed, R.4
  • 14
    • 0017688583 scopus 로고
    • An amazing sequence arrangement at the 50 ends of adenovirus 2 messenger RNA
    • Chow LT, Gelinas RE, Broker TR, Roberts RJ. 1977. An amazing sequence arrangement at the 50 ends of adenovirus 2 messenger RNA. Cell 12:1-8.
    • (1977) Cell , vol.12 , pp. 1-8
    • Chow, L.T.1    Gelinas, R.E.2    Broker, T.R.3    Roberts, R.J.4
  • 15
    • 79551632781 scopus 로고    scopus 로고
    • The ecoresponsive genome of Daphnia pulex
    • Colbourne JK, et al. 2011. The ecoresponsive genome of Daphnia pulex. Science 331:555-561.
    • (2011) Science , vol.331 , pp. 555-561
    • Colbourne, J.K.1
  • 16
    • 16344385067 scopus 로고    scopus 로고
    • Complex spliceosomal organization ancestral to extant eukaryotes
    • Collins L, Penny D. 2005. Complex spliceosomal organization ancestral to extant eukaryotes. Mol Biol Evol. 22:1053-1066.
    • (2005) Mol Biol Evol. , vol.22 , pp. 1053-1066
    • Collins, L.1    Penny, D.2
  • 17
    • 33845982198 scopus 로고    scopus 로고
    • Characterization of intron loss events in mammals
    • Coulombe-Huntington J, Majewski J. 2007a. Characterization of intron loss events in mammals. Genome Res. 17:23-32.
    • (2007) Genome Res. , vol.17 , pp. 23-32
    • Coulombe-Huntington, J.1    Majewski, J.2
  • 19
    • 0034595010 scopus 로고    scopus 로고
    • The importance of repairing stalled replication forks
    • Cox MM, et al. 2000. The importance of repairing stalled replication forks. Nature 404:37-41.
    • (2000) Nature , vol.404 , pp. 37-41
    • Cox, M.M.1
  • 20
    • 84876036998 scopus 로고    scopus 로고
    • Intron gains and losses in the evolution of Fusarium and Cryptococcus fungi
    • Croll D, McDonald BA. 2012. Intron gains and losses in the evolution of Fusarium and Cryptococcus fungi. Genome Biol Evol. 4:1148-1161.
    • (2012) Genome Biol Evol. , vol.4 , pp. 1148-1161
    • Croll, D.1    McDonald, B.A.2
  • 21
    • 46249111264 scopus 로고    scopus 로고
    • Malin: Maximum likelihood analysis of intron evolution in eukaryotes
    • Csuros M. 2008. Malin: maximum likelihood analysis of intron evolution in eukaryotes. Bioinformatics 24:1538-1539.
    • (2008) Bioinformatics , vol.24 , pp. 1538-1539
    • Csuros, M.1
  • 22
    • 80053442983 scopus 로고    scopus 로고
    • A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes
    • Csuros M, Rogozin IB, Koonin EV. 2011. A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes. PLoS Comput Biol. 7:e1002150.
    • (2011) PLoS Comput Biol. , vol.7 , pp. e1002150
    • Csuros, M.1    Rogozin, I.B.2    Koonin, E.V.3
  • 23
    • 44349155377 scopus 로고    scopus 로고
    • Computational screen for spliceosomal RNA genes AIDS in defining the phylogenetic distribution of major and minor spliceosomal components
    • Davila Lopez M, Rosenblad MA, Samuelsson T. 2008. Computational screen for spliceosomal RNA genes aids in defining the phylogenetic distribution of major and minor spliceosomal components. Nucleic Acids Res. 36:3001-3010.
    • (2008) Nucleic Acids Res. , vol.36 , pp. 3001-3010
    • Davila Lopez, M.1    Rosenblad, M.A.2    Samuelsson, T.3
  • 24
    • 78649705889 scopus 로고    scopus 로고
    • Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate
    • Denoeud F, et al. 2010. Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate. Science 330:1381-1385.
    • (2010) Science , vol.330 , pp. 1381-1385
    • Denoeud, F.1
  • 25
    • 0027446476 scopus 로고
    • A role for reverse transcripts in gene conversion
    • Derr LK, Strathern JN. 1993. A role for reverse transcripts in gene conversion. Nature 361:170-173.
    • (1993) Nature , vol.361 , pp. 170-173
    • Derr, L.K.1    Strathern, J.N.2
  • 26
    • 38649110663 scopus 로고    scopus 로고
    • BEAST: Bayesian evolutionary analysis by sampling trees
    • Drummond AJ, Rambaut A. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol Biol. 7:214.
    • (2007) BMC Evol Biol. , vol.7 , pp. 214
    • Drummond, A.J.1    Rambaut, A.2
  • 28
    • 0037026523 scopus 로고    scopus 로고
    • The U1 snRNP protein U1C recognizes the 50 splice site in the absence of base pairing
    • Du H, Rosbash M. 2002. The U1 snRNP protein U1C recognizes the 50 splice site in the absence of base pairing. Nature 419:86-90.
    • (2002) Nature , vol.419 , pp. 86-90
    • Du, H.1    Rosbash, M.2
  • 29
    • 0034496840 scopus 로고    scopus 로고
    • Perspective: Gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies
    • Edwards SV, Beerli P. 2000. Perspective: gene divergence, population divergence, and the variance in coalescence time in phylogeographic studies. Evolution 54:1839-1854.
    • (2000) Evolution , vol.54 , pp. 1839-1854
    • Edwards, S.V.1    Beerli, P.2
  • 31
    • 78650616014 scopus 로고    scopus 로고
    • DNA double-strand break repair and the evolution of intron density
    • Farlow A, Meduri E, Schlotterer C. 2011. DNA double-strand break repair and the evolution of intron density. Trends Genet. 27:1-6.
    • (2011) Trends Genet. , vol.27 , pp. 1-6
    • Farlow, A.1    Meduri, E.2    Schlotterer, C.3
  • 32
    • 80053132716 scopus 로고    scopus 로고
    • Multiple reference genomes and transcriptomes for Arabidopsis thaliana
    • Gan X, et al. 2011. Multiple reference genomes and transcriptomes for Arabidopsis thaliana. Nature 477:419-423.
    • (2011) Nature , vol.477 , pp. 419-423
    • Gan, X.1
  • 33
    • 73949123826 scopus 로고    scopus 로고
    • Ubiquitous internal gene duplication and intron creation in eukaryotes
    • Gao X, Lynch M. 2009. Ubiquitous internal gene duplication and intron creation in eukaryotes. Proc Natl Acad Sci USA. 106:20818-20823.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 20818-20823
    • Gao, X.1    Lynch, M.2
  • 34
    • 0017688797 scopus 로고
    • Evidence from UV transcription mapping in HeLa cells that heterogeneous nuclear RNA is the messenger RNA precursor
    • Goldberg S, Schwartz H, Darnell JE Jr. 1977. Evidence from UV transcription mapping in HeLa cells that heterogeneous nuclear RNA is the messenger RNA precursor. Proc Natl Acad Sci USA. 74:4520-4523.
    • (1977) Proc Natl Acad Sci U S A , vol.74 , pp. 4520-4523
    • Goldberg, S.1    Schwartz, H.2    Darnell, J.E.3
  • 35
    • 55449085777 scopus 로고    scopus 로고
    • Numt-mediated double-strand break repair mitigates deletions during primate genome evolution
    • Hazkani-Covo E, Covo S. 2008. Numt-mediated double-strand break repair mitigates deletions during primate genome evolution. PLoS Genet. 4:e1000237.
    • (2008) PLoS Genet. , vol.4 , pp. e1000237
    • Hazkani-Covo, E.1    Covo, S.2
  • 36
    • 0033972791 scopus 로고    scopus 로고
    • The balance sheet for transcription: An analysis of nuclear RNA metabolism in mammalian cells
    • Jackson DA, Pombo A, Iborra F. 2000. The balance sheet for transcription: an analysis of nuclear RNA metabolism in mammalian cells. FASEB J. 14:242-254.
    • (2000) FASEB J , vol.14 , pp. 242-254
    • Jackson, D.A.1    Pombo, A.2    Iborra, F.3
  • 37
    • 38349125022 scopus 로고    scopus 로고
    • Translational control of intron splicing in eukaryotes
    • Jaillon O, et al. 2008. Translational control of intron splicing in eukaryotes. Nature 451:359-362.
    • (2008) Nature , vol.451 , pp. 359-362
    • Jaillon, O.1
  • 38
    • 67349149631 scopus 로고    scopus 로고
    • A comparative approach shows differences in patterns of numt insertion during hominoid evolution
    • Jensen-Seaman MI, Wildschutte JH, Soto-Calderon ID, Anthony NM. 2009. A comparative approach shows differences in patterns of numt insertion during hominoid evolution. J Mol Evol. 68:688-699.
    • (2009) J Mol Evol. , vol.68 , pp. 688-699
    • Jensen-Seaman, M.I.1    Wildschutte, J.H.2    Soto-Calderon, I.D.3    Anthony, N.M.4
  • 39
    • 69249211050 scopus 로고    scopus 로고
    • Intron-dominated genomes of early ancestors of eukaryotes
    • Koonin EV. 2009. Intron-dominated genomes of early ancestors of eukaryotes. J Hered. 100:618-623.
    • (2009) J Hered. , vol.100 , pp. 618-623
    • Koonin, E.V.1
  • 40
    • 0032715175 scopus 로고    scopus 로고
    • Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda
    • table of contents
    • Kuzminov A. 1999. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda. Microbiol Mol Biol Rev. 63:751-813; table of contents.
    • (1999) Microbiol Mol Biol Rev. , vol.63 , pp. 751-813
    • Kuzminov, A.1
  • 41
    • 74049093136 scopus 로고    scopus 로고
    • Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library
    • Lam HY, et al. 2010. Nucleotide-resolution analysis of structural variants using BreakSeq and a breakpoint library. Nat Biotechnol. 28:47-55.
    • (2010) Nat Biotechnol. , vol.28 , pp. 47-55
    • Lam, H.Y.1
  • 42
    • 36448991500 scopus 로고    scopus 로고
    • Clustal W and Clustal X version 2.0
    • Larkin MA, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23:2947-2948.
    • (2007) Bioinformatics , vol.23 , pp. 2947-2948
    • Larkin, M.A.1
  • 43
    • 0035476520 scopus 로고    scopus 로고
    • A computational scan for U12-dependent introns in the human genome sequence
    • Levine A, Durbin R. 2001. A computational scan for U12-dependent introns in the human genome sequence. Nucleic Acids Res. 29:4006-4013.
    • (2001) Nucleic Acids Res. , vol.29 , pp. 4006-4013
    • Levine, A.1    Durbin, R.2
  • 44
    • 40049104732 scopus 로고    scopus 로고
    • SOAP: Short oligonucleotide alignment program
    • Li R, Li Y, Kristiansen K, Wang J. 2008. SOAP: short oligonucleotide alignment program. Bioinformatics 24:713-714.
    • (2008) Bioinformatics , vol.24 , pp. 713-714
    • Li, R.1    Li, Y.2    Kristiansen, K.3    Wang, J.4
  • 45
    • 70849137211 scopus 로고    scopus 로고
    • Extensive, recent intron gains in Daphnia populations
    • Li W, Tucker AE, Sung W, Thomas WK, Lynch M. 2009. Extensive, recent intron gains in Daphnia populations. Science 326:1260-1262.
    • (2009) Science , vol.326 , pp. 1260-1262
    • Li, W.1    Tucker, A.E.2    Sung, W.3    Thomas, W.K.4    Lynch, M.5
  • 46
    • 65649117685 scopus 로고    scopus 로고
    • DnaSP v5: A software for comprehensive analysis of DNA polymorphism data
    • Librado P, Rozas J. 2009. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25:1451-1452.
    • (2009) Bioinformatics , vol.25 , pp. 1451-1452
    • Librado, P.1    Rozas, J.2
  • 48
    • 33745088890 scopus 로고    scopus 로고
    • Intron gain and loss in segmentally duplicated genes in rice
    • Lin H, Zhu W, Silva JC, Gu X, Buell CR. 2006. Intron gain and loss in segmentally duplicated genes in rice. Genome Biol. 7:R41.
    • (2006) Genome Biol. , vol.7 , pp. R41
    • Lin, H.1    Zhu, W.2    Silva, J.C.3    Gu, X.4    Buell, C.R.5
  • 49
    • 0037062440 scopus 로고    scopus 로고
    • Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection
    • Llopart A, Comeron JM, Brunet FG, Lachaise D, Long M. 2002. Intron presence-absence polymorphism in Drosophila driven by positive Darwinian selection. Proc Natl Acad Sci USA. 99:8121-8126.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 8121-8126
    • Llopart, A.1    Comeron, J.M.2    Brunet, F.G.3    Lachaise, D.4    Long, M.5
  • 50
    • 84881026985 scopus 로고    scopus 로고
    • Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
    • Long Q, et al. 2013. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat Genet. 45:884-890.
    • (2013) Nat Genet. , vol.45 , pp. 884-890
    • Long, Q.1
  • 51
    • 0037197986 scopus 로고    scopus 로고
    • Intron evolution as a population-genetic process
    • Lynch M. 2002. Intron evolution as a population-genetic process. Proc Natl Acad Sci USA. 99:6118-6123.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , pp. 6118-6123
    • Lynch, M.1
  • 53
    • 0033042828 scopus 로고    scopus 로고
    • The quantitative and molecular genetic architecture of a subdivided species
    • Lynch M, et al. 1999. The quantitative and molecular genetic architecture of a subdivided species. Evolution 53:2016-2016.
    • (1999) Evolution , vol.53 , pp. 2016-2016
    • Lynch, M.1
  • 55
    • 24644502657 scopus 로고    scopus 로고
    • From birth to death: The complex lives of eukaryotic mRNAs
    • Moore MJ. 2005. From birth to death: the complex lives of eukaryotic mRNAs. Science 309:1514-1518.
    • (2005) Science , vol.309 , pp. 1514-1518
    • Moore, M.J.1
  • 56
    • 34848894621 scopus 로고    scopus 로고
    • Genomic minimalism in the early diverging intestinal parasite Giardia lamblia
    • Morrison HG, et al. 2007. Genomic minimalism in the early diverging intestinal parasite Giardia lamblia. Science 317:1921-1926.
    • (2007) Science , vol.317 , pp. 1921-1926
    • Morrison, H.G.1
  • 57
    • 0005814023 scopus 로고
    • Mathematical model for studying genetic variation in terms of restriction endonucleases
    • Nei M, Li WH. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA. 76:5269-5273.
    • (1979) Proc Natl Acad Sci U S A , vol.76 , pp. 5269-5273
    • Nei, M.1    Li, W.H.2
  • 58
    • 84872246297 scopus 로고    scopus 로고
    • New maximum likelihood estimators for eukaryotic intron evolution
    • Nguyen HD, Yoshihama M, Kenmochi N. 2005. New maximum likelihood estimators for eukaryotic intron evolution. PLoS Comput Biol. 1:e79.
    • (2005) PLoS Comput Biol. , vol.1 , pp. e79
    • Nguyen, H.D.1    Yoshihama, M.2    Kenmochi, N.3
  • 59
    • 52449091825 scopus 로고    scopus 로고
    • Intron presence-absence polymorphisms in Daphnia
    • Omilian AR, Scofield DG, Lynch M. 2008. Intron presence-absence polymorphisms in Daphnia. Mol Biol Evol. 25:2129-2139.
    • (2008) Mol Biol Evol. , vol.25 , pp. 2129-2139
    • Omilian, A.R.1    Scofield, D.G.2    Lynch, M.3
  • 60
    • 17844407446 scopus 로고    scopus 로고
    • Evolutionary history of contagious asexuality in Daphnia pulex
    • Paland S, Colbourne JK, Lynch M. 2005. Evolutionary history of contagious asexuality in Daphnia pulex. Evolution 59:800-813.
    • (2005) Evolution , vol.59 , pp. 800-813
    • Paland, S.1    Colbourne, J.K.2    Lynch, M.3
  • 61
    • 33144483078 scopus 로고    scopus 로고
    • Transitions to asexuality result in excess amino acid substitutions
    • Paland S, Lynch M. 2006. Transitions to asexuality result in excess amino acid substitutions. Science 311:990-992.
    • (2006) Science , vol.311 , pp. 990-992
    • Paland, S.1    Lynch, M.2
  • 62
    • 0042921194 scopus 로고    scopus 로고
    • Remarkable interkingdom conservation of intron positions and massive, lineagespecific intron loss and gain in eukaryotic evolution
    • Rogozin IB, Wolf YI, Sorokin AV, Mirkin BG, Koonin EV. 2003. Remarkable interkingdom conservation of intron positions and massive, lineagespecific intron loss and gain in eukaryotic evolution. Curr Biol. 13:1512-1517.
    • (2003) Curr Biol. , vol.13 , pp. 1512-1517
    • Rogozin, I.B.1    Wolf, Y.I.2    Sorokin, A.V.3    Mirkin, B.G.4    Koonin, E.V.5
  • 63
    • 0025876808 scopus 로고
    • Who's on first? The U1 snRNP-50 splice site interaction and splicing
    • Rosbash M, Seraphin B. 1991. Who's on first? The U1 snRNP-50 splice site interaction and splicing. Trends Biochem Sci. 16:187-190.
    • (1991) Trends Biochem Sci. , vol.16 , pp. 187-190
    • Rosbash, M.1    Seraphin, B.2
  • 64
    • 33747188649 scopus 로고    scopus 로고
    • Intron-rich ancestors
    • Roy SW. 2006. Intron-rich ancestors. Trends Genet. 22:468-471.
    • (2006) Trends Genet. , vol.22 , pp. 468-471
    • Roy, S.W.1
  • 66
    • 17644379051 scopus 로고    scopus 로고
    • Rates of intron loss and gain: Implications for early eukaryotic evolution
    • Roy SW, Gilbert W. 2005b. Rates of intron loss and gain: implications for early eukaryotic evolution. Proc Natl Acad Sci USA. 102:5773-5778.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 5773-5778
    • Roy, S.W.1    Gilbert, W.2
  • 67
    • 34547688982 scopus 로고    scopus 로고
    • A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain
    • Roy SW, Penny D. 2007. A very high fraction of unique intron positions in the intron-rich diatom Thalassiosira pseudonana indicates widespread intron gain. Mol Biol Evol. 24:1447-1457.
    • (2007) Mol Biol Evol. , vol.24 , pp. 1447-1457
    • Roy, S.W.1    Penny, D.2
  • 68
    • 33746001953 scopus 로고    scopus 로고
    • A high density of ancient spliceosomal introns in oxymonad excavates
    • Slamovits CH, Keeling PJ. 2006. A high density of ancient spliceosomal introns in oxymonad excavates. BMC Evol Biol. 6:34.
    • (2006) BMC Evol Biol. , vol.6 , pp. 34
    • Slamovits, C.H.1    Keeling, P.J.2
  • 69
    • 42949174108 scopus 로고    scopus 로고
    • Comparative genomic analysis of fungal genomes reveals intron-rich ancestors
    • Stajich JE, Dietrich FS, Roy SW. 2007. Comparative genomic analysis of fungal genomes reveals intron-rich ancestors. Genome Biol. 8:R223.
    • (2007) Genome Biol. , vol.8 , pp. R223
    • Stajich, J.E.1    Dietrich, F.S.2    Roy, S.W.3
  • 70
    • 47249101070 scopus 로고    scopus 로고
    • Where in the cell is the minor spliceosome?
    • Steitz JA, et al. 2008. Where in the cell is the minor spliceosome?. Proc Natl Acad Sci USA. 105:8485-8486.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 8485-8486
    • Steitz, J.A.1
  • 72
    • 0021066244 scopus 로고
    • Evolutionary relationship of DNA sequences in finite populations
    • Tajima F. 1983. Evolutionary relationship of DNA sequences in finite populations. Genetics 105:437-460.
    • (1983) Genetics , vol.105 , pp. 437-460
    • Tajima, F.1
  • 73
    • 0022390691 scopus 로고
    • Gene genealogy and variance of interpopulational nucleotide differences
    • Takahata N, Nei M. 1985. Gene genealogy and variance of interpopulational nucleotide differences. Genetics 110:325-344.
    • (1985) Genetics , vol.110 , pp. 325-344
    • Takahata, N.1    Nei, M.2
  • 74
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura K, et al. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. 28:2731-2739.
    • (2011) Mol Biol Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1
  • 75
    • 4544244620 scopus 로고    scopus 로고
    • Insertion of spliceosomal introns in proto-splice sites: The case of secretory signal peptides
    • Tordai H, Patthy L. 2004. Insertion of spliceosomal introns in proto-splice sites: the case of secretory signal peptides. FEBS Lett. 575:109-111.
    • (2004) FEBS Lett. , vol.575 , pp. 109-111
    • Tordai, H.1    Patthy, L.2
  • 77
    • 84884638276 scopus 로고    scopus 로고
    • Populationgenomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex
    • Tucker AE, Ackerman MS, Eads BD, Xu S, Lynch M. 2013. Populationgenomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex. Proc Natl Acad Sci USA. 110:15740-15745.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 15740-15745
    • Tucker, A.E.1    Ackerman, M.S.2    Eads, B.D.3    Xu, S.4    Lynch, M.5
  • 79
    • 0028960809 scopus 로고
    • A novel role for a U5 snRNP protein in 30 splice site selection
    • Umen JG, Guthrie C. 1995. A novel role for a U5 snRNP protein in 30 splice site selection. Genes Dev. 9:855-868.
    • (1995) Genes Dev. , vol.9 , pp. 855-868
    • Umen, J.G.1    Guthrie, C.2
  • 80
    • 84863723204 scopus 로고    scopus 로고
    • Birth of new spliceosomal introns in fungi by multiplication of introner-like elements
    • Van Der Burgt A, Severing E, De Wit PJ, Collemare J. 2012. Birth of new spliceosomal introns in fungi by multiplication of introner-like elements. Curr Biol. 22:1260-1265.
    • (2012) Curr Biol. , vol.22 , pp. 1260-1265
    • Van Der Burgt, A.1    Severing, E.2    De Wit, P.J.3    Collemare, J.4
  • 81
    • 77949559979 scopus 로고    scopus 로고
    • An ancient mechanism for splicing control: U11 snRNP as an activator of alternative splicing
    • Verbeeren J, et al. 2010. An ancient mechanism for splicing control: U11 snRNP as an activator of alternative splicing. Mol Cell. 37:821-833.
    • (2010) Mol Cell. , vol.37 , pp. 821-833
    • Verbeeren, J.1
  • 82
    • 0242300088 scopus 로고    scopus 로고
    • Endogenous DNA double-strand breaks: Production, fidelity of repair, and induction of cancer
    • Vilenchik MM, Knudson AG. 2003. Endogenous DNA double-strand breaks: production, fidelity of repair, and induction of cancer. Proc Natl Acad Sci USA. 100:12871-12876.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 12871-12876
    • Vilenchik, M.M.1    Knudson, A.G.2
  • 83
    • 84863627716 scopus 로고    scopus 로고
    • Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in mammalian intron size expansion
    • Wang D, Su Y, Wang X, Lei H, Yu J. 2012. Transposon-derived and satellite-derived repetitive sequences play distinct functional roles in mammalian intron size expansion. Evol Bioinform Online. 8:301-319.
    • (2012) Evol Bioinform Online. , vol.8 , pp. 301-319
    • Wang, D.1    Su, Y.2    Wang, X.3    Lei, H.4    Yu, J.5
  • 84
    • 83655182609 scopus 로고    scopus 로고
    • Mechanisms of intron gain and loss in Drosophila
    • Yenerall P, Krupa B, Zhou L. 2011. Mechanisms of intron gain and loss in Drosophila. BMC Evol Biol. 11:364.
    • (2011) BMC Evol Biol. , vol.11 , pp. 364
    • Yenerall, P.1    Krupa, B.2    Zhou, L.3
  • 85
    • 51949111100 scopus 로고    scopus 로고
    • Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
    • Zhang C, et al. 2008. Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2. Genes Dev. 22:2550-2563.
    • (2008) Genes Dev. , vol.22 , pp. 2550-2563
    • Zhang, C.1
  • 86
    • 78649999037 scopus 로고    scopus 로고
    • Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi
    • Zhang LY, Yang YF, Niu DK. 2010. Evaluation of models of the mechanisms underlying intron loss and gain in Aspergillus fungi. J Mol Evol. 71:364-373.
    • (2010) J Mol Evol. , vol.71 , pp. 364-373
    • Zhang, L.Y.1    Yang, Y.F.2    Niu, D.K.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.