Genomic minimalism in the early diverging intestinal parasite Giardia lamblia

Science

Volumn 317, Issue 5846, 2007, Pages 1921-1926

  Morrison, Hilary G ^a   McArthur, Andrew G ^a   Gillin, Frances D ^b   Aley, Stephen B ^c   Adam, Rodney D ^d   Olsen, Gary J ^e   Best, Aaron A ^f   Cande, W Zacheus ^g   Chen, Feng ^h   Cipriano, Michael J ^a   Davids, Barbara J ^b   Dawson, Scott C ⁱ   Elmendorf, Heidi G ^j   Hehl, Adrian B ^k   Holder, Michael E ^a   Huse, Susan M ^a   Kim, Ulandt U ^a   Lasek Nesselquist, Erica ^a   Manning, Gerard ^l   Nigam, Anuranjini ^d   Nixon, Julie E J ^a   Palm, Daniel ^m   Passamaneck, Nora E ^a   Prabhu, Anjali ^d   Reich, Claudia I ^e   Reiner, David S ^b   Samuelson, John ⁿ   Svard, Staffan G ^o   Sogin, Mitchell L ^a   more..

^a MARINE BIOLOGICAL LABORATORY   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

^c UNIVERSITY OF TEXAS AT EL PASO   (United States)

^d UNIVERSITY OF ARIZONA COLLEGE OF MEDICINE   (United States)

^e UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

^f HOPE COLLEGE   (United States)

^g UNIVERSITY OF CALIFORNIA   (United States)

^h UNIVERSITY OF PENNSYLVANIA   (United States)

ⁱ UNIVERSITY OF CALIFORNIA   (United States)

^j GEORGETOWN UNIVERSITY   (United States)

^k UNIVERSITY OF ZURICH   (Switzerland)

^l SALK INSTITUTE FOR BIOLOGICAL STUDIES   (United States)

^m SWEDISH INSTITUTE FOR INFECTIOUS DISEASE CONTROL   (Sweden)

ⁿ BOSTON UNIVERSITY   (United States)

^o UPPSALA UNIVERSITY   (Sweden)

more..

Author keywords

[No Author keywords available]

Indexed keywords

DIVERGENCE; GENE EXPRESSION; GENE TRANSFER; GENOME; HETEROZYGOSITY; MITOCHONDRIAL DNA; PARASITE; PROKARYOTE; PROTEIN; PROTIST;

ARCHAEBACTERIUM; ARTICLE; CONTROLLED STUDY; DNA REPLICATION; DNA TRANSCRIPTION; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; GIARDIA LAMBLIA; HETEROZYGOSITY; HORIZONTAL GENE TRANSFER; INTESTINE PARASITE; METABOLISM; MITOCHONDRIAL GENETICS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTOZOAL GENETICS; RNA PROCESSING; SIGNAL TRANSDUCTION;

AMINO ACID SEQUENCE; ANIMALS; DNA REPLICATION; EUKARYOTIC CELLS; EVOLUTION; GENE TRANSFER, HORIZONTAL; GENES, PROTOZOAN; GENOME, PROTOZOAN; GENOMICS; GIARDIA LAMBLIA; METABOLIC NETWORKS AND PATHWAYS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN KINASES; PROTOZOAN PROTEINS; RNA PROCESSING, POST-TRANSCRIPTIONAL; SIGNAL TRANSDUCTION; TRANSCRIPTION, GENETIC;

ARCHAEA; BACTERIA (MICROORGANISMS); EUKARYOTA; GIARDIA; GIARDIA INTESTINALIS; PROTISTA;

EID: 34848894621     PISSN: 00368075     EISSN: 10959203     Source Type: Journal    
DOI: 10.1126/science.1143837     Document Type: Article

References (43)

1. M. C. Hlavsa, J. C. Watson, M. J. Beach, MMWR Surveill. Summ. 54, 9 (2005).
2. T. Hashimoto et al., Mol. Biol. Evol. 12, 782 (1995).
3. E. Hilario, J. P. Gogarten, J. Mol. Evol. 46, 703 (1998).
4. D. D. Leipe, J. H. Gunderson, T. A. Nerad, M. L. Sogin, Mol. Biochem. Parasitol. 59, 41 (1993).
5. A. Regoes et al., J. Biol. Chem. 280, 30557 (2005).
6. A. J. Roger et al., Proc. Natl. Acad. Sci. U.S.A. 95, 229 (1998).
7. A. A. Best, H. G. Morrison, A. G. McArthur, M. L. Sogin, G. J. Olsen, Genome Res. 14, 1537 (2004).
8. J. E. Nixon et al., Proc. Natl. Acad. Sci. U.S.A. 99, 3701 (2002).
9. A. G. Russell, T. E. Shutt, R. F. Watkins, M. W. Gray, BMC Evol. Biol. 5, 45 (2005).
10. S. Vanacova, W. Yan, J. M. Carlton, P. J. Johnson, Proc. Natl. Acad. Sci. U.S.A. 102, 4430 (2005).
11. A. G. Simpson, E. K. MacQuarrie, A. J. Roger, Nature 419, 270 (2002).
12. R. D. Adam, Microbiol. Rev. 55, 706 (1991).
13. J. Samuelson et al., Proc. Natl. Acad. Sci. U.S.A. 102, 1548 (2005).
14. D. J. Kelleher, R. Gilmore, Glycobiology 16, 47R (2006).
15. S. Banerjee et al., Proc. Natl. Acad. Sci. U.S.A. 104, 11676 (2007).
16. A. G. McArthur et al., Mol. Biol. Evol. 18, 1455 (2001).
17. H. D. Luján et al., J. Biol. Chem. 270, 4612 (1995).
18. M. Marti et al., Mol. Biol. Cell 14, 1433 (2003).
19. R. Bernander, J. E. Palm, S. G. Svard, Cell. Microbiol. 3, 55 (2001).
20. A. Nagasaki, E. L. de Hostos, T. Q. Uyeda, J. Cell Sci. 115, 2241 (2002).
21. S. Suguri, K. Henze, L. B. Sanchez, D. V. Moore, M. Muller, J. Eukaryot. Microbiol. 48, 493 (2001).
22. J. M. Carlton et al., Science 315, 207 (2007).
23. L. Eckmann et al., J. Immunol. 164, 1478 (2000).
24. E. Li, P. Zhou, S. M. Singer, J. Immunol. 176, 516 (2006).
25. D. M. Brown, J. A. Upcroft, P. Upcroft, Mol. Biochem. Parasitol. 72, 47 (1995).
26. D. E. Feely, J. V. Schollmeyer, S. L. Erlandsen, Exp. Parasitol. 53, 145 (1982).
27. E. M. Narcisi, J. J. Paulin, M. Fechheimer, J. Parasitol. 80, 468 (1994).
28. R. D. Vale, J. Cell Biol. 163, 445 (2003).
29. H. G. Elmendorf, S. C. Rohrer, R. S. Khoury, R. E. Bouttenot, T. E. Nash, Int. J. Parasitol. 35, 1001 (2005).
30. D. L. Beck et al., Eukaryot. Cell 4, 722 (2005).
31. T. E. Nash, H. T. Lujan, M. R. Mowatt, J. T. Conrad, Infect. Immun. 69, 1922 (2001).
32. J. D. Barry, M. L. Ginger, P. Burton, R. McCulloch, Int. J. Parasitol. 33, 29 (2003).
33. B. J. Davids et al., PLoS ONE 1, e44 (2006).
34. A. L. Hopkins, C. R. Groom, Nat. Rev. Drug Discov. 1, 727 (2002).
35. J. Tachezy, L. B. Sanchez, M. Muller, Mol. Biol. Evol. 18, 1919 (2001).
36. J. E. Nixon et al., Eukaryot. Cell 1, 181 (2002).
37. J. O. Andersson, A. M. Sjogren, L. A. Davis, T. M. Embley, A. J. Roger, Curr. Biol. 13, 94 (2003).
38. S. G. Andersson, O. Karlberg, B. Canback, C. G. Kurland, Philos. Trans. R. Soc. London B Biol. Sci. 358, 165 (2003).
39. E. Bapteste et al., Proc. Natl. Acad. Sci. U.S.A. 99, 1414 (2002).
40. F. Thomarat, C. P. Vivares, M. Gouy, J. Mol. Evol. 59, 780 (2004).
41. A. G. Simpson et al., Mol. Biol. Evol. 19, 1782 (2002).
42. M. A. Ramesh, S. B. Malik, J. M. Logsdon Jr., Curr. Biol. 15, 185 (2005).
43. We acknowledge J. D. Silberman, S. (Pacocha) Preheim, S. Birkeland, M. Shapiro, V. Seshadri, and J. Woo for laboratory assistance and M. Pop, S. Salzburg, G. Hinkle, and R. Campbell for assistance with informatics and helpful discussions. We are grateful to The Institute for Genomic Research, the Sanger Centre, and the Joint Genome Institute for use of sequence data. The NIH/ National Institute of Allergy and Infectious Diseases (grants AI43273 to M.L.S. and AI42488/AI51687 to F.D.G.), the G. Unger Vetlesen Foundation, the Ellison Medical Foundation, and LI-COR Biotechnology supported this work. This whole-genome shotgun project has been deposited at the DNA Databank of Japan/European Molecular Biology Laboratory/GenBank under the project accession AACB00000000. The version described in this paper is the second version, AACB02000000.