-
1
-
-
33847327313
-
Mapping autism risk loci using genetic linkage and chromosomal rearrangements
-
The Autism Genome Project Consortium
-
The Autism Genome Project Consortium. 2007. Mapping autism risk loci using genetic linkage and chromosomal rearrangements. Nat Genet. 39: 319-328.
-
(2007)
Nat Genet
, vol.39
, pp. 319-328
-
-
-
2
-
-
30444446153
-
Molecular basis of RNA recognition by the human alternative splicing factor Fox-1
-
Auweter, S.D., Fasan, R., Reymond, L., Underwood, J.G., Black, D.L., Pitsch, S., and Allain, F.H.-T. 2006. Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. EMBO J. 25: 163-173.
-
(2006)
EMBO J
, vol.25
, pp. 163-173
-
-
Auweter, S.D.1
Fasan, R.2
Reymond, L.3
Underwood, J.G.4
Black, D.L.5
Pitsch, S.6
Allain, F.H.-T.7
-
3
-
-
32044467372
-
Fox-2 mediates epithelial cell-specific fibroblast growth factor receptor 2 exon choice
-
Baraniak, A.P., Chen, J.R., and Garcia-Blanco, M.A. 2006. Fox-2 mediates epithelial cell-specific fibroblast growth factor receptor 2 exon choice. Mol. Cell. Biol. 26: 1209-1222.
-
(2006)
Mol. Cell. Biol
, vol.26
, pp. 1209-1222
-
-
Baraniak, A.P.1
Chen, J.R.2
Garcia-Blanco, M.A.3
-
4
-
-
3042762344
-
The de novo chromosome 16 translocations of two patients with abnormal phenotypes (mental retardation and epilepsy) disrupt the A2BP1 gene
-
Bhalla, K., Phillips, H.A., Crawford, J., McKenzie, O.L.D., Mulley, J.C., Eyre, H., Gardner, A.E., Kremmidiotis, G., and Callen, D.F. 2004. The de novo chromosome 16 translocations of two patients with abnormal phenotypes (mental retardation and epilepsy) disrupt the A2BP1 gene. J. Hum. Genet. 49: 308-311.
-
(2004)
J. Hum. Genet
, vol.49
, pp. 308-311
-
-
Bhalla, K.1
Phillips, H.A.2
Crawford, J.3
McKenzie, O.L.D.4
Mulley, J.C.5
Eyre, H.6
Gardner, A.E.7
Kremmidiotis, G.8
Callen, D.F.9
-
5
-
-
0013394889
-
Mechanisms of alternative pre-messenger RNA splicing
-
Black, D.L. 2003. Mechanisms of alternative pre-messenger RNA splicing. Annu. Rev. Biochem. 72: 291-336.
-
(2003)
Annu. Rev. Biochem
, vol.72
, pp. 291-336
-
-
Black, D.L.1
-
6
-
-
33745899048
-
Alternative splicing: New insights from global analyses
-
Blencowe, B.J. 2006. Alternative splicing: New insights from global analyses. Cell 126: 37-47.
-
(2006)
Cell
, vol.126
, pp. 37-47
-
-
Blencowe, B.J.1
-
7
-
-
33846135109
-
MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development
-
Boutz, P.L., Chawla, G., Stoilov, P., and Black, D.L. 2007a. MicroRNAs regulate the expression of the alternative splicing factor nPTB during muscle development. Genes & Dev. 21: 71-84.
-
(2007)
Genes & Dev
, vol.21
, pp. 71-84
-
-
Boutz, P.L.1
Chawla, G.2
Stoilov, P.3
Black, D.L.4
-
8
-
-
34347384211
-
A post-transcriptional regulatory switch in polypyrimidine tractbinding proteins reprograms alternative splicing in developing neurons
-
Boutz, P.L., Stoilov, P., Li, Q., Lin, C.-H., Chawla, G., Ostrow, K., Shiue, L., Ares Jr., M., and Black, D.L. 2007b. A post-transcriptional regulatory switch in polypyrimidine tractbinding proteins reprograms alternative splicing in developing neurons. Genes & Dev. 21: 1636-1652.
-
(2007)
Genes & Dev
, vol.21
, pp. 1636-1652
-
-
Boutz, P.L.1
Stoilov, P.2
Li, Q.3
Lin, C.-H.4
Chawla, G.5
Ostrow, K.6
Shiue, L.7
Ares Jr., M.8
Black, D.L.9
-
9
-
-
0035369805
-
Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing
-
Brudno, M., Gelfand, M.S., Spengler, S., Zorn, M., Dubchak, I., and Conboy, J.G. 2001. Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing. Nucleic Acids Res. 29: 2338-2348.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 2338-2348
-
-
Brudno, M.1
Gelfand, M.S.2
Spengler, S.3
Zorn, M.4
Dubchak, I.5
Conboy, J.G.6
-
10
-
-
0036207384
-
Listening to silence and understanding nonsense: Exonic mutations that affect splicing
-
Cartegni, L., Chew, S.L., and Krainer, A.R. 2002. Listening to silence and understanding nonsense: Exonic mutations that affect splicing. Nat. Rev. Genet. 3: 285-298.
-
(2002)
Nat. Rev. Genet
, vol.3
, pp. 285-298
-
-
Cartegni, L.1
Chew, S.L.2
Krainer, A.R.3
-
11
-
-
34547922009
-
A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing
-
Das, D., Clark, T.A., Schweitzer, A., Yamamoto, M., Marr, H., Arribere, J., Minovitsky, S., Poliakov, A., Dubchak, I., Blume, J.E., et al. 2007. A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing. Nucleic Acids Res. 35: 4845-4857.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 4845-4857
-
-
Das, D.1
Clark, T.A.2
Schweitzer, A.3
Yamamoto, M.4
Marr, H.5
Arribere, J.6
Minovitsky, S.7
Poliakov, A.8
Dubchak, I.9
Blume, J.E.10
-
12
-
-
38949133822
-
The search for alternative splicing regulators: New approaches offer a path to a splicing code
-
David, C.J. and Manley, J.L. 2008. The search for alternative splicing regulators: New approaches offer a path to a splicing code. Genes & Dev. 22: 279-285.
-
(2008)
Genes & Dev
, vol.22
, pp. 279-285
-
-
David, C.J.1
Manley, J.L.2
-
13
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
doi: 10.1186/gb-2003-4-5-p3
-
Dennis, G., Sherman, B., Hosack, D., Yang, J., Gao, W., Lane, H., and Lempicki, R. 2003. DAVID: Database for annotation, visualization, and integrated discovery. Genome Biol. 4: R60. doi: 10.1186/gb-2003-4-5-p3.
-
(2003)
Genome Biol
, vol.4
-
-
Dennis, G.1
Sherman, B.2
Hosack, D.3
Yang, J.4
Gao, W.5
Lane, H.6
Lempicki, R.7
-
14
-
-
27644582893
-
Probing tumor phenotypes using stable and regulated synthetic microRNA precursors
-
Dickins, R.A., Hemann, M.T., Zilfou, J.T., Simpson, D.R., Ibarra, I., Hannon, G.J., and Lowe, S.W. 2005. Probing tumor phenotypes using stable and regulated synthetic microRNA precursors. Nat. Genet. 37: 1289-1295.
-
(2005)
Nat. Genet
, vol.37
, pp. 1289-1295
-
-
Dickins, R.A.1
Hemann, M.T.2
Zilfou, J.T.3
Simpson, D.R.4
Ibarra, I.5
Hannon, G.J.6
Lowe, S.W.7
-
15
-
-
34548139624
-
Functional coordination of alternative splicing in the mammalian central nervous system
-
doi: 10.1186/gb-2007-8-6-r108
-
Fagnani, M., Barash, Y., Ip, J., Misquitta, C., Pan, Q., Saltzman, A., Shai, O., Lee, L., Rozenhek, A., Mohammad, N., et al. 2007. Functional coordination of alternative splicing in the mammalian central nervous system. Genome Biol. 8: R108. doi: 10.1186/gb-2007-8-6-r108.
-
(2007)
Genome Biol
, vol.8
-
-
Fagnani, M.1
Barash, Y.2
Ip, J.3
Misquitta, C.4
Pan, Q.5
Saltzman, A.6
Shai, O.7
Lee, L.8
Rozenhek, A.9
Mohammad, N.10
-
16
-
-
34548764367
-
Tissue-specific splicing regulator Fox-1 induces exon skipping by interfering E complex formation on the downstream intron of human F1γ gene
-
Fukumura, K., Kato, A., Jin, Y., Ideue, T., Hirose, T., Kataoka, N., Fujiwara, T., Sakamoto, H., and Inoue, K. 2007. Tissue-specific splicing regulator Fox-1 induces exon skipping by interfering E complex formation on the downstream intron of human F1γ gene. Nucleic Acids Res. 35: 5303-5311.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 5303-5311
-
-
Fukumura, K.1
Kato, A.2
Jin, Y.3
Ideue, T.4
Hirose, T.5
Kataoka, N.6
Fujiwara, T.7
Sakamoto, H.8
Inoue, K.9
-
17
-
-
0028308631
-
Regulation of alternative pre-mRNA splicing by a novel repeated hexanucleotide element
-
Huh, G.S. and Hynes, R.O. 1994. Regulation of alternative pre-mRNA splicing by a novel repeated hexanucleotide element. Genes & Dev. 8: 1561-1574.
-
(1994)
Genes & Dev
, vol.8
, pp. 1561-1574
-
-
Huh, G.S.1
Hynes, R.O.2
-
18
-
-
38649129366
-
Diverse roles of hnRNP L in mammalian mRNA processing: A combined microarray and RNAi analysis
-
Hung, L.-H., Heiner, M., Hui, J., Schreiner, S., Benes, V., and Bindereif, A. 2008. Diverse roles of hnRNP L in mammalian mRNA processing: A combined microarray and RNAi analysis. RNA 14: 284-296.
-
(2008)
RNA
, vol.14
, pp. 284-296
-
-
Hung, L.-H.1
Heiner, M.2
Hui, J.3
Schreiner, S.4
Benes, V.5
Bindereif, A.6
-
19
-
-
17044427579
-
Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers
-
Ibrahim, E.C., Schaal, T.D., Hertel, K.J., Reed, R., and Maniatis, T. 2005. Serine/arginine-rich protein-dependent suppression of exon skipping by exonic splicing enhancers. Proc. Natl. Acad. Sci. 102: 5002-5007.
-
(2005)
Proc. Natl. Acad. Sci
, vol.102
, pp. 5002-5007
-
-
Ibrahim, E.C.1
Schaal, T.D.2
Hertel, K.J.3
Reed, R.4
Maniatis, T.5
-
20
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
The International HapMap Consortium
-
The International HapMap Consortium. 2007. A second generation human haplotype map of over 3.1 million SNPs. Nature 449: 851-861.
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
-
21
-
-
2042437650
-
Initial sequencing and analysis of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. 2001. Initial sequencing and analysis of the human genome. Nature 409: 860-921.
-
(2001)
Nature
, vol.409
, pp. 860-921
-
-
-
22
-
-
33947720465
-
Global analysis of alternative splicing during T-cell activation
-
Ip, J.Y., Tong, A., Pan, Q., Topp, J.D., Blencowe, B.J., and Lynch, K.W. 2007. Global analysis of alternative splicing during T-cell activation. RNA 13: 563-572.
-
(2007)
RNA
, vol.13
, pp. 563-572
-
-
Ip, J.Y.1
Tong, A.2
Pan, Q.3
Topp, J.D.4
Blencowe, B.J.5
Lynch, K.W.6
-
23
-
-
0037656313
-
Mutations of the X-linked genes encoding neuroligins NLGN3 and NLGN4 are associated with autism
-
Jamain, S. 2003. Mutations of the X-linked genes encoding neuroligins NLGN3 and NLGN4 are associated with autism. Nat. Genet. 34: 27-29.
-
(2003)
Nat. Genet
, vol.34
, pp. 27-29
-
-
Jamain, S.1
-
24
-
-
0037450704
-
A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG
-
Jin, Y., Suzuki, H., Maegawa, S., Endo, H., Sugano, S., Hashimoto, K., Yasuda, K., and Inoue, K. 2003. A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG. EMBO J. 22: 905-912.
-
(2003)
EMBO J
, vol.22
, pp. 905-912
-
-
Jin, Y.1
Suzuki, H.2
Maegawa, S.3
Endo, H.4
Sugano, S.5
Hashimoto, K.6
Yasuda, K.7
Inoue, K.8
-
25
-
-
0347623371
-
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
-
Johnson, J.M., Castle, J., Garrett-Engele, P., Kan, Z., Loerch, P.M., Armour, C.D., Santos, R., Schadt, E.E., Stoughton, R., and Shoemaker, D.D. 2003. Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays. Science 302: 2141-2144.
-
(2003)
Science
, vol.302
, pp. 2141-2144
-
-
Johnson, J.M.1
Castle, J.2
Garrett-Engele, P.3
Kan, Z.4
Loerch, P.M.5
Armour, C.D.6
Santos, R.7
Schadt, E.E.8
Stoughton, R.9
Shoemaker, D.D.10
-
26
-
-
0029952557
-
Neuron-specific alternative splicing of non-muscle myosin II heavy chain-B pre-mRNA requires a cis-acting intron sequence
-
Kawamoto, S. 1996. Neuron-specific alternative splicing of non-muscle myosin II heavy chain-B pre-mRNA requires a cis-acting intron sequence. J. Biol. Chem. 271: 17613-17616.
-
(1996)
J. Biol. Chem
, vol.271
, pp. 17613-17616
-
-
Kawamoto, S.1
-
27
-
-
0037504378
-
Genome-wide array analysis of normal and malformed human hearts
-
Kaynak, B., von Heydebreck, A., Mebus, S., Seelow, D., Hennig, S., Vogel, J., Sperling, H.-P., Pregla, R., Alexi-Meskishvili, V., Hetzer, R., et al. 2003. Genome-wide array analysis of normal and malformed human hearts. Circulation 107: 2467-2474.
-
(2003)
Circulation
, vol.107
, pp. 2467-2474
-
-
Kaynak, B.1
von Heydebreck, A.2
Mebus, S.3
Seelow, D.4
Hennig, S.5
Vogel, J.6
Sperling, H.-P.7
Pregla, R.8
Alexi-Meskishvili, V.9
Hetzer, R.10
-
28
-
-
33845275018
-
RTP-Chip: The isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts
-
Keene, J.D., Komisarow, J.M., and Friedersdorf, M.B. 2006. RTP-Chip: The isolation and identification of mRNAs, microRNAs and protein components of ribonucleoprotein complexes from cell extracts. Nat. Protoc. 1: 302-307.
-
(2006)
Nat. Protoc
, vol.1
, pp. 302-307
-
-
Keene, J.D.1
Komisarow, J.M.2
Friedersdorf, M.B.3
-
29
-
-
0034919348
-
Identification and expression of a mouse ortholog of A2BP1
-
Kiehl, T.-R., Shibata, H., Vo, T., Huynh, D.P., and Pulst, S.-M. 2001. Identification and expression of a mouse ortholog of A2BP1. Mamm. Genome 12: 595-601.
-
(2001)
Mamm. Genome
, vol.12
, pp. 595-601
-
-
Kiehl, T.-R.1
Shibata, H.2
Vo, T.3
Huynh, D.P.4
Pulst, S.-M.5
-
30
-
-
37549047982
-
The Fox-1 family and SUP-12 coordinately regulate tissue-specific alternative splicing in vivo
-
Kuroyanagi, H., Ohno, G., Mitani, S., and Hagiwara, M. 2007. The Fox-1 family and SUP-12 coordinately regulate tissue-specific alternative splicing in vivo. Mol. Cell. Biol. 27: 8612-8621.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 8612-8621
-
-
Kuroyanagi, H.1
Ohno, G.2
Mitani, S.3
Hagiwara, M.4
-
31
-
-
35548940665
-
Neuronal regulation of alternative pre-mRNA splicing
-
Li, Q., Lee, J.-A., and Black, D.L. 2007. Neuronal regulation of alternative pre-mRNA splicing. Nat. Rev. Neurosci. 8: 819-831.
-
(2007)
Nat. Rev. Neurosci
, vol.8
, pp. 819-831
-
-
Li, Q.1
Lee, J.-A.2
Black, D.L.3
-
32
-
-
0031806710
-
Alternative splicing of the fibronectin EIIIB exon depends on specific TGCATG repeats
-
Lim, L.P. and Sharp, P.A. 1998. Alternative splicing of the fibronectin EIIIB exon depends on specific TGCATG repeats. Mol. Cell. Biol. 18: 3900-3906.
-
(1998)
Mol. Cell. Biol
, vol.18
, pp. 3900-3906
-
-
Lim, L.P.1
Sharp, P.A.2
-
33
-
-
0032435862
-
Alternative splicing of pre-mRNA: Developmental consequences and mechanisms of regulation
-
Lopez, A.J. 1998. Alternative splicing of pre-mRNA: Developmental consequences and mechanisms of regulation. Annu. Rev. Genet. 32: 279-305.
-
(1998)
Annu. Rev. Genet
, vol.32
, pp. 279-305
-
-
Lopez, A.J.1
-
34
-
-
15544379277
-
Are splicing mutations the most frequent cause of hereditary disease?
-
López-Bigas, N., Audit, B., Ouzounis, C., Parra, G., and Guigó, R. 2005. Are splicing mutations the most frequent cause of hereditary disease? FEBS Lett. 579: 1900-1903.
-
(2005)
FEBS Lett
, vol.579
, pp. 1900-1903
-
-
López-Bigas, N.1
Audit, B.2
Ouzounis, C.3
Parra, G.4
Guigó, R.5
-
35
-
-
34547212309
-
The microRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing
-
Makeyev, E.V., Zhang, J., Carrasco, M.A., and Maniatis, T. 2007. The microRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol. Cell 27: 435-448.
-
(2007)
Mol. Cell
, vol.27
, pp. 435-448
-
-
Makeyev, E.V.1
Zhang, J.2
Carrasco, M.A.3
Maniatis, T.4
-
36
-
-
0037041395
-
An extensive network of coupling among gene expression machines
-
Maniatis, T. and Reed, R. 2002. An extensive network of coupling among gene expression machines. Nature 416: 499-506.
-
(2002)
Nature
, vol.416
, pp. 499-506
-
-
Maniatis, T.1
Reed, R.2
-
37
-
-
35148885611
-
Cytogenetic and molecular characterization of A2BP1/FOX1 as a candidate gene for autism
-
Martin, C., Duvall, J., Ilkin, Y., Simon, J., Arreaza, M., Wilkes, K., Alvarez-Retuerto, A., Whichello, A., Powell, C., Rao, K., et al. 2007. Cytogenetic and molecular characterization of A2BP1/FOX1 as a candidate gene for autism. Am. J. Med. Genet. B Neuropsychiatr. Genet. 144B: 869-876.
-
(2007)
Am. J. Med. Genet. B Neuropsychiatr. Genet
, vol.144 B
, pp. 869-876
-
-
Martin, C.1
Duvall, J.2
Ilkin, Y.3
Simon, J.4
Arreaza, M.5
Wilkes, K.6
Alvarez-Retuerto, A.7
Whichello, A.8
Powell, C.9
Rao, K.10
-
38
-
-
48749124117
-
ChIPping away at gene regulation
-
Massie, C.E. and Mills, I.G. 2008. ChIPping away at gene regulation. EMBO Rep. 9: 337-343.
-
(2008)
EMBO Rep
, vol.9
, pp. 337-343
-
-
Massie, C.E.1
Mills, I.G.2
-
39
-
-
38649089551
-
Exon expression profiling reveals stimulus-mediated exon use in neural cells
-
doi: 10.1186/gb-2007-8-8-r159
-
McKee, A., Neretti, N., Carvalho, L., Meyer, C., Fox, E., Brodsky, A., and Silver, P. 2007. Exon expression profiling reveals stimulus-mediated exon use in neural cells. Genome Biol. 8: R159. doi: 10.1186/gb-2007-8-8-r159.
-
(2007)
Genome Biol
, vol.8
-
-
McKee, A.1
Neretti, N.2
Carvalho, L.3
Meyer, C.4
Fox, E.5
Brodsky, A.6
Silver, P.7
-
41
-
-
0034195219
-
Sex in the worm: Counting and compensating X-chromosome dose
-
Meyer, B.J. 2000. Sex in the worm: Counting and compensating X-chromosome dose. Trends Genet. 16: 247-253.
-
(2000)
Trends Genet
, vol.16
, pp. 247-253
-
-
Meyer, B.J.1
-
42
-
-
38849149795
-
28-Way vertebrate alignment and conservation track in the UCSC genome browser
-
Miller, W., Rosenbloom, K., Hardison, R.C., Hou, M., Taylor, J., Raney, B., Burhans, R., King, D.C., Baertsch, R., Blankenberg, D., et al. 2007. 28-Way vertebrate alignment and conservation track in the UCSC genome browser. Genome Res. 17: 1797-1808.
-
(2007)
Genome Res
, vol.17
, pp. 1797-1808
-
-
Miller, W.1
Rosenbloom, K.2
Hardison, R.C.3
Hou, M.4
Taylor, J.5
Raney, B.6
Burhans, R.7
King, D.C.8
Baertsch, R.9
Blankenberg, D.10
-
43
-
-
13844314248
-
The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons
-
Minovitsky, S., Gee, S.L., Schokrpur, S., Dubchak, I., and Conboy, J.G. 2005. The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons. Nucleic Acids Res. 33: 714-724.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 714-724
-
-
Minovitsky, S.1
Gee, S.L.2
Schokrpur, S.3
Dubchak, I.4
Conboy, J.G.5
-
44
-
-
38649125206
-
Global analysis of mRNA splicing
-
Moore, M.J. and Silver, P.A. 2008. Global analysis of mRNA splicing. RNA 14: 197-203.
-
(2008)
RNA
, vol.14
, pp. 197-203
-
-
Moore, M.J.1
Silver, P.A.2
-
45
-
-
17544367787
-
Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities
-
Nakahata, S. and Kawamoto, S. 2005. Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities. Nucleic Acids Res. 33: 2078-2089.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 2078-2089
-
-
Nakahata, S.1
Kawamoto, S.2
-
46
-
-
0036190973
-
A negative coregulator for the human ER
-
Norris, J.D., Fan, D., Sherk, A., and McDonnell, D.P. 2002. A negative coregulator for the human ER. Mol. Endocrinol. 16: 459-468.
-
(2002)
Mol. Endocrinol
, vol.16
, pp. 459-468
-
-
Norris, J.D.1
Fan, D.2
Sherk, A.3
McDonnell, D.P.4
-
47
-
-
33744958662
-
Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16
-
Ponthier, J.L., Schluepen, C., Chen, W., Lersch, R.A., Gee, S.L., Hou, V.C., Lo, A.J., Short, S.A., Chasis, J.A., Winkelmann, J.C., et al. 2006. Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16. J. Biol. Chem. 281: 12468-12474.
-
(2006)
J. Biol. Chem
, vol.281
, pp. 12468-12474
-
-
Ponthier, J.L.1
Schluepen, C.2
Chen, W.3
Lersch, R.A.4
Gee, S.L.5
Hou, V.C.6
Lo, A.J.7
Short, S.A.8
Chasis, J.A.9
Winkelmann, J.C.10
-
48
-
-
34247481814
-
Strong association of de novo copy number mutations with autism
-
Sebat, J., Lakshmi, B., Malhotra, D., Troge, J., Lese-Martin, C., Walsh, T., Yamrom, B., Yoon, S., Krasnitz, A., Kendall, J., et al. 2007. Strong association of de novo copy number mutations with autism. Science 316: 445-449.
-
(2007)
Science
, vol.316
, pp. 445-449
-
-
Sebat, J.1
Lakshmi, B.2
Malhotra, D.3
Troge, J.4
Lese-Martin, C.5
Walsh, T.6
Yamrom, B.7
Yoon, S.8
Krasnitz, A.9
Kendall, J.10
-
49
-
-
36049018312
-
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
-
Stark, A., Lin, M.F., Kheradpour, P., Pedersen, J.S., Parts, L., Carlson, J.W., Crosby, M.A., Rasmussen, M.D., Roy, S., Deoras, A.N., et al. 2007. Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures. Nature 450: 219-232.
-
(2007)
Nature
, vol.450
, pp. 219-232
-
-
Stark, A.1
Lin, M.F.2
Kheradpour, P.3
Pedersen, J.S.4
Parts, L.5
Carlson, J.W.6
Crosby, M.A.7
Rasmussen, M.D.8
Roy, S.9
Deoras, A.N.10
-
50
-
-
2442694425
-
Transcriptome and genome conservation of alternative splicing events in humans and mice
-
Sugnet, C., Kent, W., Ares, M.J., and Haussler, D. 2004. Transcriptome and genome conservation of alternative splicing events in humans and mice. Pac. Symp. Biocomput. 2004: 66-77.
-
(2004)
Pac. Symp. Biocomput
, vol.2004
, pp. 66-77
-
-
Sugnet, C.1
Kent, W.2
Ares, M.J.3
Haussler, D.4
-
51
-
-
33645760966
-
-
Sugnet, C.W., Srinivasan, K., Clark, T.A., Brien, G., Cline, M.S., Wang, H., Williams, A., Kulp, D., Blume, J.E., Haussler, D., et al. 2006. Unusual intron conservation near tissue-regulated exons found by splicing microarrays. PLoS Computat. Biol. 2: e4. doi: 10.1371/journal.pcbi.0020004.
-
Sugnet, C.W., Srinivasan, K., Clark, T.A., Brien, G., Cline, M.S., Wang, H., Williams, A., Kulp, D., Blume, J.E., Haussler, D., et al. 2006. Unusual intron conservation near tissue-regulated exons found by splicing microarrays. PLoS Computat. Biol. 2: e4. doi: 10.1371/journal.pcbi.0020004.
-
-
-
-
52
-
-
0345865005
-
ASD: The alternative splicing database
-
doi: 10.1093/nar/gkh030
-
Thanaraj, T.A., Stamm, S., Clark, F., Riethoven, J.-J., Le Texier, V., and Muilu, J. 2004. ASD: The alternative splicing database. Nucleic Acids Res. 32: D64-D69. doi: 10.1093/nar/gkh030.
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Thanaraj, T.A.1
Stamm, S.2
Clark, F.3
Riethoven, J.-J.4
Le Texier, V.5
Muilu, J.6
-
53
-
-
27944508215
-
CLIP: A method for identifying protein-RNA interaction sites in living cells
-
Ule, J., Jensen, K., Mele, A., and Darnell, R.B. 2005a. CLIP: A method for identifying protein-RNA interaction sites in living cells. Methods 37: 376-386.
-
(2005)
Methods
, vol.37
, pp. 376-386
-
-
Ule, J.1
Jensen, K.2
Mele, A.3
Darnell, R.B.4
-
54
-
-
23044431574
-
Nova regulates brain-specific splicing to shape the synapse
-
Ule, J., Ule, A., Spencer, J., Williams, A., Hu, J.-S., Cline, M., Wang, H., Clark, T., Fraser, C., Ruggiu, M., et al. 2005b. Nova regulates brain-specific splicing to shape the synapse. Nat. Genet. 37: 844-852.
-
(2005)
Nat. Genet
, vol.37
, pp. 844-852
-
-
Ule, J.1
Ule, A.2
Spencer, J.3
Williams, A.4
Hu, J.-S.5
Cline, M.6
Wang, H.7
Clark, T.8
Fraser, C.9
Ruggiu, M.10
-
55
-
-
33749056769
-
An RNA map predicting Nova-dependent splicing regulation
-
Ule, J., Stefani, G., Mele, A., Ruggiu, M., Wang, X., Taneri, B., Gaasterland, T., Blencowe, B.J., and Darnell, R.B. 2006. An RNA map predicting Nova-dependent splicing regulation. Nature 444: 580-586.
-
(2006)
Nature
, vol.444
, pp. 580-586
-
-
Ule, J.1
Stefani, G.2
Mele, A.3
Ruggiu, M.4
Wang, X.5
Taneri, B.6
Gaasterland, T.7
Blencowe, B.J.8
Darnell, R.B.9
-
56
-
-
27644455141
-
Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals
-
Underwood, J.G., Boutz, P.L., Dougherty, J.D., Stoilov, P., and Black, D.L. 2005. Homologues of the Caenorhabditis elegans Fox-1 protein are neuronal splicing regulators in mammals. Mol. Cell. Biol. 25: 10005-10016.
-
(2005)
Mol. Cell. Biol
, vol.25
, pp. 10005-10016
-
-
Underwood, J.G.1
Boutz, P.L.2
Dougherty, J.D.3
Stoilov, P.4
Black, D.L.5
-
57
-
-
34347379534
-
A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing
-
Voelker, R.B. and Berglund, J.A. 2007. A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing. Genome Res. 17: 1023-1033.
-
(2007)
Genome Res
, vol.17
, pp. 1023-1033
-
-
Voelker, R.B.1
Berglund, J.A.2
-
58
-
-
14544277546
-
Identification and analysis of alternative splicing events conserved in human and mouse
-
Yeo, G.W., Van Nostrand, E., Holste, D., Poggio, T., and Burge, C.B. 2005. Identification and analysis of alternative splicing events conserved in human and mouse. Proc. Natl. Acad. Sci. 102: 2850-2855.
-
(2005)
Proc. Natl. Acad. Sci
, vol.102
, pp. 2850-2855
-
-
Yeo, G.W.1
Van Nostrand, E.2
Holste, D.3
Poggio, T.4
Burge, C.B.5
-
59
-
-
34249696543
-
Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements
-
doi: 10.1371/journal.pgen.0030085
-
Yeo, G.W., Van Nostrand, E.L., and Liang, T.Y. 2007. Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements. PLoS Genet. 3: e85. doi: 10.1371/journal.pgen.0030085.
-
(2007)
PLoS Genet
, vol.3
-
-
Yeo, G.W.1
Van Nostrand, E.L.2
Liang, T.Y.3
-
60
-
-
35448950862
-
Dual-specificity splice sites function alternatively as 5′ and 3′ splice sites
-
Zhang, C., Hastings, M.L., Krainer, A.R., and Zhang, M.Q. 2007. Dual-specificity splice sites function alternatively as 5′ and 3′ splice sites. Proc. Natl. Acad. Sci. 104: 15028-15033.
-
(2007)
Proc. Natl. Acad. Sci
, vol.104
, pp. 15028-15033
-
-
Zhang, C.1
Hastings, M.L.2
Krainer, A.R.3
Zhang, M.Q.4
|