Unveiling the diversification dynamics of australasian predaceous diving beetles in the cenozoic

Systematic Biology

Volumn 64, Issue 1, 2015, Pages 3-24

  Toussaint, Emmanuel F A ^a   Condamine, Fabien L ^b   Hawlitschek, Oliver ^a   Watts, Chris H ^c   Porch, Nick ^d   Hendrich, Lars ^a   Balke, Michael ^a,e  

^a ZOOLOGISCHE STAATSSAMMLUNG MÜNCHEN   (Germany)

^b CENTRE DE MATHÉMATIQUES APPLIQUÉES   (France)

^c SOUTH AUSTRALIAN MUSEUM   (Australia)

^d DEAKIN UNIVERSITY   (Australia)

^e UNIVERSITY OF MUNICH   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL; AUSTRALIA; BEETLE; CLASSIFICATION; FOSSIL; GENE; GENETIC VARIABILITY; GENETICS; PHYLOGENY; SPECIES DIFFERENTIATION;

ANIMALS; AUSTRALIA; BEETLES; FOSSILS; GENES, INSECT; GENETIC SPECIATION; GENETIC VARIATION; PHYLOGENY;

EID: 84930216878     PISSN: 10635157     EISSN: 1076836X     Source Type: Journal    
DOI: 10.1093/sysbio/syu067     Document Type: Article

References (149)

1. Alfaro M.E., Santini F., Brock C., Alamillo H., Dornburg A., Rabosky D.L., Carnevale G., Harmon L.J. 2009. Nine exceptional radiations plus high turnover explain species diversity in jawed vertebrates. Proc. Natl. Acad. Sci. USA. 106 (32): 13410-13414.
2. Andújar C., Serrano J., Gómez-Zurita J. 2012.Windingupthe molecular clock in the genus Carabus (Coleoptera: Carabidae): assessment of methodological decisions on rate and node age estimation. BMC Evol. Biol. 12 (1): 40.
3. Balke M. 1995. The Hydroporini (Coleoptera: Dytiscidae: Hydroporinae) of New Guinea: systematics, distribution and origin of the fauna. Invertebr. Taxon. 9 (5): 1009-1019.
4. Balke M., Ribera I. 2004. Jumping across Wallace's line: Allodessus Guignot and Limbodessus Guignot revisited (Coleoptera: Dytiscidae, Bidessini) based on molecular-phylogenetic and morphological data. Aust. J. Entomol. 43 (2): 114-128.
5. Balke M., Pons J., Ribera I., Sagata K., Vogler A.P. 2007a. Infrequent and unidirectional colonization of hyperdiverse Papuadytes diving beetles in New Caledonia and New Guinea. Mol. Phylogenet. Evol. 42 (2): 505-516.
6. Balke M., Wewalka G., Alarie Y., Ribera I. 2007b. Molecular phylogeny of Pacific Island Colymbetinae: radiation of New Caledonian and Fijian species (Coleoptera, Dytiscidae). Zool. Scr. 36 (2): 173-200.
7. Balke M., Ribera I., Hendrich L., Miller M.A., Sagata K., Posman A., Vogler A.P., Meier R. 2009. New Guinea highland origin of a widespread arthropod supertramp. Proc. Roy. Soc. B. 276 (1666): 2359-2367.
8. Bell K.L., Moritz C., Moussalli A., Yeates D.K. 2007. Comparative phylogeography and speciation of dung beetles from theAustralian Wet Tropics rainforest. Mol. Ecol. 16 (23): 4984-4998.
9. Bininda-Emonds O.R.P., Cardillo M., Jones K.E., MacPhee R.D.E., Beck R.M.D., Grenyer R., Price S.A., Vos R.A., Gittleman J.L., Purvis A. 2007. The delayed rise of present-day mammals. Nature. 446 (7135): 507-512.
10. Bowman D.M.J.S., Brown G.K., Braby M.F., Brown J.R., Cook L.G., Crisp M.D., Ford F., Haberle S., Hughes J., Isagi Y., Joseph L., McBride J., Nelson G., Ladiges P. Y. 2010. Biogeography of the Australian monsoon tropics. J. Biogeogr. 37 (2): 201-216.
11. Brandley M.C., Wang Y., Guo X., de Oca A.N.M., Fería-Ortíz M., Hikida T., Ota H. 2011. Accommodating heterogenous rates of evolution in molecular divergence dating methods: an example using intercontinental dispersal of Plestiodon (Eumeces) lizards. Syst. Biol. 60 (1): 3-15.
12. Byrne M., Yeates D.K., Joseph L., Kearney M., Bowler J., Williams M.A.J., Cooper S., Donnellan S.C., Keogh J.S., Leys R., Melville J., Murphy D.J., Porch N., Wyrwoll K.-H. 2008. Birth of a biome: insights into the assembly and maintenance of the Australian arid zone biota. Mol. Ecol. 17 (20): 4398-4417.
13. Byrne M., Steane D.A., Joseph L., Yeates D.K., Jordan G.J., Crayn D., Aplin K., Cantrill D.J., Cook L.G., Crisp M.D., Keogh J.S., Melville J., Moritz C., Porch N., Sniderman J.M.K., Sunnucks P., Weston P.H. 2011. Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota. J. Biogeogr. 38 (9): 1635-1656.
14. Carstensen D.W., Dalsgaard B., Svenning J.C., Rahbek C., Fjeldsa J., Sutherland W.J., Olesen J.M. 2012. Biogeographical modules and island roles: a comparison of Wallacea and the West Indies. J. Biogeogr. 39 (4): 739-749.
15. Carstensen D.W., Dalsgaard B., Svenning J.C., Rahbek C., Fjeldsa J., Sutherland W.J., Olesen J.M. 2013. The functional biogeography of species: biogeographical species roles of birds in Wallacea and the West Indies. Ecography 36 (10): 1097-1105.
16. Condamine F.L., Sperling F.A., Wahlberg N., Rasplus J.Y., Kergoat G.J. 2012. What causes latitudinal gradients in species diversity? Evolutionary processes and ecological constraints on swallowtail biodiversity. Ecol. Lett. 15 (3): 267-277.
17. Condamine F.L., Toussaint E.F.A., Cotton A.M., Genson G.S., Sperling F.A.H., Kergoat G.J. 2013. Fine-scale biogeographical and temporal diversification processes of peacock swallowtails (Papilio subgenus Achillides) in the Indo-Australian Archipelago. Cladistics. 29 (1): 88-111.
18. Cooper S.J.B., Hinze S., Leys R., Watts C.H.S., Humphreys W.F. 2002. Islands under the desert: molecular systematics and evolutionary origins of stygobitic water beetles (Coleoptera: Dytiscidae) from central Western Austalia. Invertebr. Syst. 16 (4): 589-598.
19. Cooper S.J.B., Bradbury J.H., Saint K.M., Leys R., Austin A.D., Humphreys W.F. 2007. Subterranean archipelago in the Australian arid zone: mitochondrialDNAphylogeography of amphipods from central Western Australia. Mol. Ecol. 16 (7): 1533-1544.
20. Cooper S.J.B., Saint K.M., Taiti S., Austin A.D., Humphreys W.F. 2008. Subterranean archipelago: mitochondrial DNA phylogeography of stygobitic isopods (Oniscidea: Haloniscus) from the Yilgarn region of Western Australia. Invertebr. Syst. 22 (2): 195-203.
21. Cooper S.J.B., Harvey M.S., Saint K.M., Main B.Y. 2011. Deep phylogeographic structuring of populations of the trapdoor spider Moggridgea tingle (Migidae) from southwestern Australia: evidence for long-term refugia within refugia. Mol. Ecol. 20 (15): 3219-3236.
22. Cornell H.V. 2013. Is regional species diversity bounded or unbounded? Biol. Rev. 88 (1): 140-165.
23. CusimanoN., Renner S.S. 2010. Slowdownsin diversification rates from real phylogenies may not be real. Syst. Biol. 59 (4): 458-464.
24. Darriba D., Taboada G.L., Doallo R., Posada D. 2012. jModelTest 2: moremodels, newheuristics and parallel computing.Nat. Methods 9 (8): 772.
25. Davis M.P., Midford P.E., Maddison W. 2013. Exploring power and parameter estimation of the BiSSE method for analyzing species diversification. BMC Evol. Biol. 13 (1): 38.
26. Day J.J., Peart C.R. Brown, K.J. Friel, J.P., Bills R., Moritz T. 2013. Continental Diversification of an African Catfish Radiation (Mochokidae: Synodontis). Syst. Biol. 62 (3): 351-365.
27. De Bruyn M., von Rintelen T., von Rintelen K., Mather P.B., Carvalho G.R. 2012. Molecular biogeography and phylogeography of the freshwater fauna of the Indo-Australian Archipelago. In: Gower D.J., Johnson K., Richardson J., Rosen B., Rüber L., Williams S., editors. Biotic evolution and environmental change in Southeast Asia. Cambridge: Syst. Assoc. Vol., Cambridge University Press.
28. De Bruyn M., Rüber L., Nylinder S., Stelbrink B., Lovejoy N.R., Lavoué S., Tan H.H., Nugroho E., Wowor D., Ng P.K.L., Azizah M.N.S., Von Rintelen T., Hall R., Carvalho G.R. 2013. Paleo-drainage basin connectivity predicts evolutionary relationships across three Southeast Asian biodiversity hotspots. Syst. Biol. 62 (3): 398-410.
29. Derryberry E.P., Claramunt S., Derryberry G., Chesser R.T., Cracraft J., Aleixo A., Pérez-Emán J., Remsen J.V., Brumfield, R.T. 2011. Lineage diversification and morphological evolution in a large-scale continental radiation: the neotropical ovenbirds and woodcreepers (Aves: Furnariidae). Evolution 65 (10): 2973-2986.
30. Drexel J.F., Preiss W.V., Parker A.J. 1995. The Geology of South Australia: The Phanerozoic (Vol. 54). Mines and Energy, South Australia, Geological Survey of South Australia.
31. Drummond A.J., Ho S.Y., Phillips M.J., Rambaut A. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4 (5): e88.
32. Drummond C.S., Eastwood R.J., Miotto S.T., Hughes C.E. 2012a. Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): testing for key innovation with incomplete taxon sampling. Syst. Biol. 61 (3): 443-460.
33. Drummond A.J., Suchard M.A., Xie D., Rambaut A. 2012b. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol. Biol. Evol. 29 (8): 1969-1973.
34. Edgar R.C. 2004. MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32 (5): 1792-1797.
35. Etienne R.S., Haegeman B., Stadler T., Aze T., Pearson P.N., Purvis A., Phillimore A.B. 2012. Diversity-dependence brings molecular phylogenies closer to agreement with the fossil record. Proc. Roy. Soc. B. 279 (1732): 1300-1309.
36. Faille A., Ribera I., Deharveng L., Bourdeau C., Garnery L., Queinnec E., Deuve T. 2010. A molecular phylogeny shows the single origin of the Pyrenean subterranean Trechini ground beetles (Coleoptera: Carabidae). Mol. Phylogenet. Evol. 54 (1): 97-105.
37. Felsenstein J. 2004. Inferring phylogenies. Sinauer Associates, Sunderland, Massachusetts.
38. FitzJohn R.G., Maddison W.P., Otto S.P. 2009. Estimating traitdependent speciation and extinction rates from incompletely resolved phylogenies. Syst. Biol. 58 (6): 595-611.
39. FitzJohn, R. G. 2012. Diversitree: comparative phylogenetic analyses of diversification in R. Meth. Ecol. Evol. 3 (6): 1084-1092.
40. Fritz S.A., Rahbek C. 2012. Global patterns of amphibian phylogenetic diversity. J. Biogeogr. 39 (8): 1373-1382.
41. Fujita M.K., McGuire J.A., Donnellan S.C., Moritz C. 2010. Diversification and persistence at the arid-monsoonal interface: Australia-wide biogeography of the Bynoe's gecko (Heteronotia binoei; Gekkonidae). Evolution 64 (8): 2293-2314.
42. Gandolfo M.A., Nixon K.C., Crepet W.L. 2008. Selection of fossils for calibration of molecular dating models. Ann. Mo. Bot. Gard. 95 (1): 34-42.
43. Gavrilets S., Losos J.B. 2009. Adaptive radiation: contrasting theory with data. Science. 323 (5915): 732-737.
44. Georges A., Zhang X., Unmack P., Reid B. N., Le M., McCord W. P. 2014. Contemporary genetic structure of an endemic freshwater turtle reflects Miocene orogenesis of New Guinea. Biol. J. Linn. Soc. 111 (1): 192-208.
45. Goldberg E.E., Lancaster L.T., Ree R.H. 2011. Phylogenetic inference of reciprocal effects between geographic range evolution and diversification. Syst. Biol. 60 (4): 451-465.
46. Glor R.E. 2010. Phylogenetic insights on adaptive radiation. Annu. Rev. Ecol. Evol. Syst. 41:251-270.
47. Graur D., Martin W. 2004. Reading the entrails of chickens: molecular timescales of evolution and the illusion of precision. Trends Genet. 20 (2): 80-86.
48. Guzik M.T., AustinA.D., Cooper S.J.B., HarveyM.S., HumphreysW.F., Bradford T., Eberhard S.M., King R.A., Leys R., Muirhead K.A., Tomlinson M. 2011. Is the Australian subterranean fauna uniquely diverse? Invert. Syst. 24 (5): 407-418.
49. Guzik M.T., Adams M.A., Murphy N.P., Cooper S.J.B., Austin A.D. 2012. Desert Springs: Deep Phylogeographic Structure in an Ancient Endemic Crustacean (Phreatomerus latipes). PLoS One 7 (7): e37642.
50. Hall R. 2002. Cenozoic geological and plate tectonic evolution of SE Asia and the SW Pacific: computer-based reconstructions, model and animations. J. Asian Earth Sci. 20 (4): 353-431.
51. Hall R. 2011. Australia-SE Asia collision: plate tectonics and crustal flow. Geol. Soc. London Spec. Publ. 355 (1): 75-109.
52. Harmon L. J., Schulte II J.A., Larson A., Losos J.B. 2003. Tempo and mode of evolutionary radiation in iguanian lizards. Science. 301 (5635): 961-964.
53. Hawlitschek O., PorchN., Hendrich L., BalkeM. 2011. Ecological niche modeling and nDNA sequencing support a new, morphologically cryptic beetle species unveiled by DNA barcoding. PLoS One. 6 (2): e16662.
54. Hawlitschek O., Hendrich L., Espeland M., Toussaint E.F.A., Genner M.J., Balke M. 2012. Pleistocene climate change promoted rapid diversification of aquatic invertebrates in Southeast Australia. BMC Evol. Biol. 12 (1): 142.
55. Heath T.A., Zwickl D.J., KimJ., Hillis D.M. 2008.Taxon sampling affects inferences of macroevolutionary processes from phylogenetic trees. Syst. Biol. 57 (1): 160-166.
56. Hendrich L. 2003. A new species of Necterosoma SHARP from the Kimberley region in north-western Australia (Coleoptera: Dytiscidae). Entomologische Zeitschrift. 113:152-154, figures on pp. 144-145.
57. Hendrich L. 2008. Tiporus emmae sp.n. from Northern Australia (Coleoptera: Dytiscidae, Hydroporinae). Linzer biologische Beiträge. 40 (1): 311-320.
58. Hendrich L., Fery H. 2008. Paroster baylyi sp. n., P. ursulae sp. n. (Col. Dytiscidae, Hydroporinae) and the water beetle diversity of pan-gnammas on isolated granite outcrops in the Mallee of south-western Australia. Zootaxa. 1704:27-41.
59. Hendrich L., Watts C.H.S. 2009. Taxonomic revision of the Australian predaceouswater beetle genus CarabhydrusWATTS, 1978 (Coleoptera: Dytiscidae, Hydroporinae). Zootaxa. 2048:1-30.
60. Hendrich L., Toussaint E.F.A., Balke M. 2014. A new genus of Hydroporini from south-western Australia (Coleoptera, Dytiscidae). Spixiana. 37 (1): 103-109.
61. Ho S.Y.W., Phillips M.J. 2009. Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times. Syst. Biol. 58 (3): 367-380.
62. Hope G., Kershaw A.P., Kaars S.V.D., Xiangjun S., Liew P.M., Heusser L.E., Takahara H., McGlone M., Miyoshi M., Moss P.T. 2004. History of vegetation and habitat change in the Austral-Asian region. Quatern. Int. 118:103-126.
63. Hugall A.F., Stanisic J., 2011. Beyond the prolegomenon: a molecular phylogeny of the Australian camaenid land snail radiation. Zool. J. Linnean Soc. 161 (3): 531-572.
64. Hunt T., Bergsten J., Levkanicova Z., Papadopoulou A., John O.S., Wild R., Hammond P.M., Ahrens D., Balke M., Caterino M.S., Gómez-Zurita J., Ribera I., Barraclough T.G., Bocakova M., Bocak L., Vogler A.P. 2007. A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation. Science. 318 (5858): 1913-1916.
65. Jetz W., Thomas G.H., Joy J.B., Hartmann K., Mooers A.O. 2012. The global diversity of birds in space and time. Nature. 491 (7424): 444-448.
66. Kass R., Raftery A. 1995. Bayes factors. J. Am. Statist. 90 (430): 773-795.
67. Kayaalp P., Schwarz M.P., Stevens M.I. 2013. Rapid diversification in Australia and two dispersals out of Australia in the globally distributed bee genus, Hylaeus (Colletidae: Hylaeinae). Mol. Phylogenet. Evol. 66 (3): 668-678.
68. Kembel S.W., Cowan P.D., Helmus M.R., Cornwell W.K., Morlon H, Ackerly D.D., Blomberg S.P., Webb C.O. 2010. Picante: R tools for integrating phylogenies and ecology. Bioinformatics. 26 (11): 1463-1464.
69. Leijs R., van Nes E.H., Watts C.H.S., Cooper S.J.B., Humphreys W.F., Hogendoorn K. 2012. Evolution of blind beetles in isolated aquifers: a test of alternative modes of speciation PLOS One 7 (3): e34260.
70. Leslie A.B., Beaulieu J.M., Rai H.S., Crane P.R., Donoghue M.J., Mathews S. 2012. Hemisphere-scale differences in conifer evolutionary dynamics. Proc. Natl. Acad. Sci. USA. 109 (40): 16217-16221.
71. Leys R., Watts C.H.S., Cooper S.J.B., HumphreysW.F. 2003.Evolution of subterranean diving beetles (Coleoptera: Dytiscidae: Hydroporini, Bidessini) in the arid zone of Australia. Evolution. 57 (12): 2819-2834.
72. Leys R., Watts C.H.S. 2008. Systematics and evolution of theAustralian subterranean hydroporine diving beetles (Dytiscidae), with notes on Carabhydrus. Invertebr. Syst. 22 (2): 217-225.
73. Lohman D.J., de Bruyn M., Page T., von Rintelen K., Hall R., Ng P.K.L., Shih H-T., Carvalho G.R., von Rintelen T. 2011. Biogeography of the Indo-Australian Archipelago. Ann. Rev. Ecol. Evol. Syst. 42:205-226.
74. Lukoschek V., Keogh J.S., Avise J.C. 2012. Evaluating fossil calibrations for dating phylogenies in light of rates of molecular evolution: a comparison of three approaches. Syst. Biol. 61 (1): 22-43.
75. Lucky A. 2011. Molecular phylogeny and biogeography of the spider ants, genus LeptoMamex Mayr (Hymenoptera: Formicidae). Mol. Phylogenet. Evol. 59 (2): 281-292.
76. Maddison W.P., Midford P.E., Otto S.P. 2007. Estimating a binary character's effect on speciation and extinction. Syst. Biol. 56 (5): 701-710.
77. Martin H.A. 2006. Cenozoic climatic change and the development of the arid vegetation in Australia. J. Arid Environ. 66 (3): 533-563.
78. McGuigan K., Zhu D., Allen G.R., Moritz C. 2000. Phylogenetic relationships and historical biogeography of melanotaeniid fishes in Australia and New Guinea. Mar. Freshwater Res. 51 (7): 713-723.
79. McPeek M.A. 2008. The ecological dynamics of clade diversification and community assembly. Am. Nat. 172 (6): 270-284.
80. Miller K.B., Lubkin S.H. 2001. Calicovatellus petrodytes, a newgenus and species of primitive vatelline diving beetle (Coleoptera: Dytiscidae: Hydroporinae: Vatellini) from the Miocene Barstow Formation, southern California, USA. J. Paleontol. 75 (4): 890-894.
81. Miller K.B. 2005. Revision of the New World and south-east Asian Vatellini (Coleoptera: Dytiscidae: Hydroporinae) and phylogenetic analysis of the tribe. Zool. J. Linnean Soc.144 (4): 415-510.
82. Miller K.G., Kominz M.A., Browning J.V., Wright J.D., Mountain G.S., Katz M.E., Sugarman P.J., Cramer B.S., Christie-Blick N., Pekar S.F. 2005. The Phanerozoic record of global sea-level change. Science 310 (5752): 1293-1298.
83. Monaghan M.T., Balke M., Pons J., Vogler A.P. 2006. Beyond barcodes: complex DNA taxonomy of a South Pacific Island radiation. Proc. Roy. Soc. B. 273 (1588): 887-893.
84. Moreau C.S., Bell C.D., Vila R., Archibald S.B., Pierce N.E. 2006. Phylogeny of the ants: diversification in the age of angiosperms. Science. 312 (5770): 101-104.
85. Morlon H., Parsons T.L., Plotkin J.B. 2011. Reconciling molecular phylogenies with the fossil record. Proc. Natl. Acad. Sci. USA. 108 (39): 16327-16332.
86. Morlon H., Kemps B.D., Plotkin J.B., Brisson D. 2012. Explosive radiation of a bacterial species group. Evolution. 66 (8): 2577-2586.
87. Morvan C., Malard F., Paradis E., Lefébure T., Konecny-Dupré L., Douady C.J. 2013. Timetree of Aselloidea reveals species diversification dynamics in groundwater. Syst. Biol. 62 (4): 512-522.
88. Müller C.J., Matos-Maraví P.F., Beheregaray L.B. 2012. Delving into Delias Hübner (Lepidoptera: Pieridae): fine-scale biogeography, phylogenetics and systematics of theworld's largest butterfly genus. J. Biogeogr. 40 (5): 881-893.
89. Murphy N.P., Adams M., Austin A.D. 2009. Independent colonization and extensive cryptic speciation of freshwater amphipods in the isolated groundwater springs of Australia's Great Artesian Basin. Mol. Ecol. 18 (1): 109-122.
90. Murphy N.P., Breed M.F., Guzik M.T., Cooper S.J.B., Austin A.D. 2012. Trapped in desert springs: phylogeography of Australian desert spring snails. J. Biogeogr. 39 (9): 1573-1582.
91. Nagalingum N.S., Marshall C.R., Quental T.B., Rai H.S., Little D.P., Matthews S. 2011. Recent synchronous radiation of a living fossil. Science. 334 (6057): 796-799.
92. Near T.J., Sanderson M.J. 2004. Assessing the quality of molecular divergence time estimates by fossil calibrations and fossil-based model selection. Phil. Trans. Roy. Soc. B. 359 (1450): 1477-1483.
93. NilssonA.N. 2001. Dytiscidae (Coleoptera).World catalogue of insects. Vol. 3. Stenstrup (Danmark): Apollo Books. p. 395.
94. NilssonA.N., Fery H. 2006.World Catalogue of Dytiscidae - corrections and additions, 3 (Coleoptera: Dytiscidae). Koleopterologische Rundschau. 76:55-74.
95. Papadopoulou A., Anastasiou I., Vogler A.P. 2010. Revisiting the insect mitochondrial molecular clock: the mid-Aegean trench calibration. Mol. Biol. Evol. 27 (7): 1659-1672.
96. Paradis E., Claude J., Strimmer K. 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics. 20 (2): 289-290.
97. Phillimore A.B., Price T.D. 2008. Density-dependent cladogenesis in birds. PLoS Biol. 6 (3): e71.
98. Ponniah M., Hughes J.M. 2004. The evolution of Queensland spiny mountain crayfish of the genus Euastacus. I. Testing vicariance and dispersal with interspecific mitochondrial DNA. Evolution. 58 (5): 1071-1085.
99. Ponomarenko A.G. 1987. New Mesozoic water beetles (Insecta, Coleoptera) from Asia. Paleontol. Zh. 2:83-97.
100. Rabosky D.L. 2006. Likelihood methods for detecting temporal shifts in diversification rates. Evolution. 60 (6): 1152-1164.
101. Rabosky D.L., Donnellan S.C., TalabaA.L., Lovette I.J. 2007. Exceptional among-lineage variation in diversification rates during the radiation of Australia's most diverse vertebrate clade. Proc. Roy. Soc. B. 274 (1628): 2915-2923.
102. Rabosky D.L., Lovette I.J. 2008. Explosive evolutionary radiations: decreasing speciation or increasing extinction through time? Evolution. 62 (8): 1866-1875.
103. Rabosky D.L. 2009. Ecological limits and diversification rate: alternative paradigms to explain the variation in species richness among clades and regions. Ecol. Lett. 12 (8): 735-43.
104. Ree R.H., Moore B.R., Webb C.O., Donoghue M.J. 2005. A likelihood framework for inferring the evolution of geographic range on phylogenetic trees. Evolution. 59 (11): 2299-2311.
105. Ree R.H., Smith S.A. 2008. Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis. Syst. Biol. 57 (1): 4-14.
106. Ribera I., Vogler A.P., Balke M. 2008. Molecular phylogeny and diversification of diving beetles (Coleoptera: Dytiscidae). Cladistics. 24 (4): 563-590.
107. Ricklefs R.E. 2004. A comprehensive framework for global patterns in biodiversity. Ecol. Lett. 7 (1): 1-15.
108. Ricklefs R.E. 2007. Estimating diversification rates from phylogenetic information. Trends Ecol. Evol. 22 (11): 601-610.
109. Rix M.G., HarveyM.S. 2012. Phylogeny and historical biogeography of ancient assassin spiders (Araneae: Archaeidae) in the Australian mesic zone: Evidence for Miocene speciation within Tertiary refugia. Mol. Phylogenet. Evol. 62 (1): 375-396.
110. Ronquist F., Sanmartín I. 2011. Phylogenetic methods in biogeography. Annu. Rev. Ecol. Evol. S. 42 (1): 441-464.
111. Ronquist F., Teslenko M., van der Mark P., Ayres D.L., Darling A., Höhna S., Larget B., Liu L., Suchard M.A., Huelsenbeck J.P. 2012. MrBayes 3.2:Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space. Syst. Biol. 61 (3): 539-542.
112. Sauquet H., Ho S.Y., Gandolfo M.A., Jordan G.J., Wilf P., Cantrill D.J., Bayly M.J., Bromham L., Brown G.K., Carpenter R.J., Lee D.M., Murphy D.J., Sniderman J.M.K., Udovicic F. 2012. Testing the impact of calibration on molecular divergence times using a fossil-rich group: the case of Nothofagus (Fagales). Syst. Biol. 61 (2): 289-313.
113. Schultz M.B., Smith S.A., Horwitz P., Richardson A.M.M., Crandall K.A., Austin C.M. 2009. Evolution underground: a molecular phylogenetic investigation of Australian burrowing freshwater crayfish (Decapoda: Parastacidae) with particular focus on Engaeus Erichson. Mol. Phylogenet. Evol. 50 (3): 580-598.
114. Schweizer M., Güntert M., Hertwig S.T. 2012. Phylogeny and biogeography of the parrot genus Prioniturus (Aves: Psittaciformes). J. Zool. Syst. Evol. Res. 50 (2): 145-156.
115. Schwentner M., Timms B.V., Richter S. 2012. Flying with the birds? Recent large-area dispersal of four Australian Limnadopsis species (Crustacea: Branchiopoda: Spinicaudata). Ecol. Evol. 2 (7): 1605-1626.
116. Sniderman J.M.K., Pillans B., O'Sullivan P.B., Kershaw A.P. 2007. Climate and vegetation in southeastern Australia respond to Southern Hemisphere insolation forcing in the late Pliocene-early Pleistocene. Geology. 35 (1): 41-44.
117. Sniderman J.M.K., Porch N., Kershaw A.P. 2009. Quantitative reconstruction of Early Pleistocene climate in southeasternAustralia and implications for atmospheric circulation. Quaternary Sci. Rev. 28 (27): 3185-3196.
118. Sniderman J.K., Jordan G.J., Cowling R.M. 2013. Fossil evidence for a hyperdiverse sclerophyll flora under a non-Mediterranean-type climate. Proc. Natl. Acad. Sci. USA. 110 (9): 3423-3428.
119. Soltis D.E., Smith S.A., Cellinese N., Wurdack K.J., Tank D.C., Brockington S.F, Refulio-Rodriguez N.F., Walker J.B., Moore M.J., Carlsward B.S., Bell C.D., Latvis M., Crawley S., Black C., Diouf D., Xi Z., Rushworth C.A., Gitzendanner M.A., Sytsma K.J., Qiu Y., Hilu K.W., Davis C.C., Sanderson M.J., Beaman R.S., Olmstead R.G., JuddW.S., Donoghue M.J., Soltis P.S. 2011. Angiosperm phylogeny: 17 genes, 640 taxa. Am. J. Bot. 98 (4): 704-730.
120. Sota T., Takami Y., Monteith G.B., Moore B.P. 2005. Phylogeny and character evolution of endemic Australian carabid beetles of the genus Pamborus based on mitochondrial and nuclear gene sequences. Mol. Phylogenet. Evol. 36 (2): 391-404.
121. Stadler T. 2011. Inferring speciation and extinction processes from extant species data. Proc. Natl. Acad. Sci. USA. 108 (39): 16145-16146.
122. Stadler T. 2013. Recovering speciation and extinction dynamics based on phylogenies. J. Evol. Biol. 26 (6): 1203-1219.
123. Stamatakis A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics. 22 (21): 2688-2690.
124. Stelbrink B., Albrecht C., Hall R., von Rintelen T. 2012. The biogeography of Sulawesi revisited: is there evidence for a vicariant origin of taxa onWallace's "anomalous island"? Evolution 66 (7): 2252-2271.
125. Swofford D.L. 2003. PAUP∗. Phylogenetic Analysis Using Parsimony (∗and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
126. Tänzler R., Toussaint E.F.A., Suhardjono Y.R., Balke M., Riedel A. 2014. Multiple transgressions of Wallace's Line explain diversity of flightless Trigonopterus weevils on Bali. Proc. Roy. Soc. B. 281 (1782): 20132528.
127. Toussaint E.F.A., Hall R., Monaghan M., Sagata K., Ibalim S., Shaverdo H.V., Vogler A.P., Pons J., Balke M. 2014. The towering orogeny of New Guinea as a trigger for arthropod megadiversity. Nat. Commun. 5:5001.
128. Toussaint E.F.A., Sagata K., Surbakti S., Hendrich L., Balke M. 2013. Australasian sky islands act as a diversity pump facilitating peripheral speciation and complex reversal from narrow endemic to widespread ecological supertramp. Ecol. Evol. 3 (4) :1031-1049.
129. Unmack P.J. 2001. Biogeography of Australian freshwater fishes. J. Biogeogr. 28 (9): 1053-1089.
130. Unmack P.J., Dowling T.E. 2010. Biogeography of the genus Craterocephalus (Teleostei: Atherinidae) in Australia. Mol. Phylogenet. Evol. 55 (3): 968-984.
131. Unmack P.J., Bagley J.C., Adams M., Hammer M.P., Johnson J.B. 2012. Molecular phylogeny and phylogeography of the Australian freshwater fish genus Galaxiella with an emphasis on dwarf galaxias (g. Pusilla). PLoS One. 7 (6): e38433.
132. Unmack P.J., Allen G.R., Johnson J.B. 2013. Phylogeny and biogeography of rainbowfishes (Melanotaeniidae) from Australia and New Guinea. Mol. Phylogenet. Evol. 67 (1): 15-27.
133. Voris H.K. 2000. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. J. Biogeogr. 27 (5): 1153-1167.
134. Wallace A.R. 1860. On the zoological geography of the Malay Archipelago. J. Proc. Linn. Soc. 4 (16): 172-184.
135. Wallace A.R. 1863. On the physical geography of the Malay Archipelago. J. Roy. Geog. Soc. 33:217-234.
136. Watts C.H.S. 1997. A new genus and species of Australian Dytiscidae (Coleoptera). Rec. South Australian Mus. 29 (2): 121-123.
137. Watts C.H.S. 2002. Checklist and guides to the identification, to genus, of adults and larval Australian water beetles of the families Dytiscidae, Noteridae, Hygrobiidae, Haliplidae, Gyrinidae, Hydraenidae and the superfamily Hydrophiloidea (Insecta - oleoptera). Cooperative Research Centre for Freshwater Ecology (Australia). Identificat. Ecol. Guide. 43:1-110.
138. Watts C.H.S., Hancock P.J., Leys R. 2008. Paroster peelensis sp nov.: a new stygobiticwater beetle from alluvial gravels inNorthernNewSouth Wales (Coleoptera: Dytiscidae). Aust. J. Entomol. 47 (3): 227-231.
139. Watts C.H.S., Humphreys W.F. 1999. Three new genera and five new species of Dytiscidae (Coleoptera) from underground waters in Australia.Rec. South Australian Mus. 32 (2): 121-142.
140. Watts C.H.S., Humphreys W.F. 2000. Six new species of Nirridessus and Tjirtudessus (Dytiscidae; Coleoptera) fromundergroundwaters in Australia Rec. South Australian Mus. 33:127-144.
141. Watts C.H.S., Humphreys W.F. 2001. A new genus and six new species of Dytiscidae (Coleoptera) from underground waters in the Yilgarn Palaeodrainage 15 system of Western Australia. Rec. South Australian Mus. 34 (2): 99-114.
142. Watts C.H.S., Humphreys W.F. 2003. Twenty-five new Dytiscidae (Coleoptera) of the genera Tjirtudessus Watts and Humphreys, Nirripirti Watts and Humphreys and Bidessodes Regimbart, from underground waters in Australia. Rec. South Australian Mus. 36 (2): 135-187.
143. Watts C.H.S., Humphreys W.F. 2004. Thirteen new Dytiscidae (Coleoptera) of the genera Boongurrus Larson, Tjirtudessus Watts and Humphreys and Nirripirti Watts and Humphreys, from underground waters in Australia. Trans. R. Soc. S. Aust. 128:99-129.
144. Watts C.H.S., Humphreys W.F. 2006. Twenty-six new Dytiscidae (Coleoptera) of the Genera Limbodessus Guignot and NirripirtiWatts and Humphreys, from underground waters in Australia. Trans. R. Soc. S. Aust. 130 (1): 123-185.
145. Watts C.H.S., Humphreys W.F. 2009. Fourteen new Dytiscidae (Coleoptera) of the genera Limbodessus Guignot and Paroster Sharp and Exocelina Broun from underground waters in Australia. Trans. R. Soc. S. Aust. 133 (1): 62-107.
146. Wiegmann B.M., Trautwein M.D., Winkler I.S., Barr N.B., Kim J.W., Lambkin C., Bertone M.A., Cassel B.K., Bayless K.M., Heimberg A.M., Wheeler B.M., Peterson K.J., Pape T., Sinclair B.J., Skevington J.H., Blagoderov V., Caravas J., Kutty N.S., Schmidt-Ott U., Kampmeier G.E., Thompson F.C., Grimaldi D.A., Beckenbach A.T., Courtney G.W., Friedrich M., Meier R., Yeates D.K. 2011. Episodic radiations in the fly tree of life. Proc. Natl. Acad. Sci. USA. 108 (14): 5690-5695.
147. Wiens J.J. 2011. The causes of species richness patterns across space, time, and clades and the role of "ecological limits". Q. Rev. Biol. 86 (2): 75-96.
148. Woodburne M., Tedford R., Swisher C. 1990. Lithostratigraphy, biostratigraphy, and geochronology of the Barstow Formation, Mojave Desert, Southern California. Geol. Soc. Am. Bull. 102 (4): 459-477.
149. XieW., Lewis P.O., Fan Y., Kuo L., Chen M-H. 2011. Improving marginal likelihood estimation for Bayesian phylogenetic model selection. Syst. Biol. 60 (2): 150-160.