A molecular phylogeny shows the single origin of the Pyrenean subterranean Trechini ground beetles (Coleoptera: Carabidae)

Molecular Phylogenetics and Evolution

Volumn 54, Issue 1, 2010, Pages 97-106

  Faille, A ^a,b   Ribera, I ^b,c   Deharveng, L ^a   Bourdeau, C ^d   Garnery, L ^e   Queinnec E ^f   Deuve, T ^a  

^a Sorbonne Universités   (France)

^b INSTITUTE OF EVOLUTIONARY BIOLOGY CSIC UNIVERSITAT POMPEU FABRA   (Spain)

^c MUSEO NACIONAL DE CIENCIAS NATURALES   (Spain)

^d CNRS UPR9034 ^*  (France)

^e France and University of Paris Sud   (France)

^f NONE   (France)

Author keywords

Aphaenops; Convergence; Endogean; Subterranean environment; Trechinae; Troglobitic

Indexed keywords

MITOCHONDRIAL DNA;

ALGORITHM; ANIMAL; ARTICLE; BAYES THEOREM; BEETLE; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; ENVIRONMENT; FRANCE; GENETICS; GEOGRAPHY; MOLECULAR EVOLUTION; PHYLOGENY; SEQUENCE ALIGNMENT; SPAIN; SPECIES DIFFERENTIATION;

ALGORITHMS; ANIMALS; BAYES THEOREM; BEETLES; CELL NUCLEUS; DNA, MITOCHONDRIAL; ENVIRONMENT; EVOLUTION, MOLECULAR; FRANCE; GENETIC SPECIATION; GEOGRAPHY; PHYLOGENY; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SPAIN;

CARABIDAE; COLEOPTERA; TRECHINI;

EID: 70849125940     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2009.10.008     Document Type: Article

References (96)

1. Abeille de Perrin, E., 1872. Etudes sur les Coléoptères cavernicoles suivies de la description de 27 Coléoptères nouveaux français. Marius Olive, Marseille, 41 p.
2. Barr T.C. The taxonomy, distribution, and affinities of Neaphaenops, with notes on associated species of Pseudanophthalmus (Coleoptera, Carabidae). Am. Mus. Novit. 2682 (1979) 1-20
3. Barr T.C., and Holsinger J.R. Speciation in cave faunas. Ann. Rev. Ecol. Syst. 16 (1985) 313-337
4. Bedel, L., Simon, E., 1875. Liste générale des Articulés Cavernicoles de l'Europe. P. Gervais, Paris, IV, pp. 1-69.
5. Bertini A. The Northern Apennines palynological record as a contribute for the reconstruction of the Messinian palaeoenvironments. Sedim. Geol. 188-189 (2006) 235-258
6. Blin N., and Stafford D.W. A general method for isolation of high molecular weight DNA from Eucaryots. Nucleic Acids Res. 3 (1976) 2303
7. Bonvouloir H.d. Description d'un genre nouveau et de deux espèces nouvelles de coléoptères de France. Ann. Soc. Entomol. Fr. 4 1 (1862) 567-571 (1861)
8. Borges P.A.V., Oromí P., Serrano A.R.M., Amorim I.R., and Pereira F. Biodiversity patterns of cavernicolous ground-beetles and their conservation status in the Azores, with the description of a new species: Trechus isabelae n. sp. (Coleoptera: Carabidae: Trechinae). Zootaxa 1478 (2007) 21-31
9. Brower A.V.Z. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc. Natl. Acad. Sci. USA 91 (1994) 6491-6495
10. Bruch A.A., Uhl D., and Mosbrugger V. Miocene climate in Europe-Patterns and evolution. A first synthesis of NECLIME. Palaeogeog. Palaeoclim. Palaeoecol. 253 (2007) 1-7
11. Cabidoche M. Sur les Aphaenops du groupe rhadamanthus (Col. Carab.). Ann. Spéléol. 20 4 (1965) 523-528
12. Cabidoche, M., 1966. Contribution à la connaissance de l'écologie des Trechinae cavernicoles pyrénéens. Unpublished thesis. Paris, 228 pp.
13. Caccone A. Gene flow in cave arthropods: a qualitative and quantitative approach. Evolution 39 (1985) 1223-1234
14. Casale A. Two new hypogean beetles from Sardinia, Sardaphaenops adelphus n. sp. (Coleoptera Carabidae) and Patriziella muceddai n. sp. (Coleoptera Cholevidae) and their biogeographical significance. Boll. Soc. Entomol. Ital. 136 1 (2004) 3-31
15. Casale A., and Laneyrie R. Trechodinae et Trechinae du monde. Tableau des sous-familles, tribus, séries phylétiques, genres, et catalogue général des espèces. Mém. Biospéol. 9 (1982) 1-226
16. Casale A., Vigna Taglianti A., and Juberthie C. Coleoptera Carabidae. In: Juberthie C., and Decu V. (Eds). Encyclopaedia Biospeologica, tome II. Société Internationale de Biospéologie (1998), Moulis, France 1047-1081
17. Chapman P. Caves and Cave Life (1993), Harper Collins, London pp. 1-224
18. Coiffait H. Monographie des Trechinae cavernicoles des Pyrénées. Ann. Spéléol. 17 1 (1962) 119-170
19. Coiffait H. Aphaenops (Cerbaphaenops) bourdeaui, nouvelle espèce des Pyrénées Atlantiques. Nouv. Rev. Entomol. 6 3 (1976) 247-248
20. Contreras-Díaz H.G., Moya O., Oromí P., and Juan C. Evolution and diversification of the forest and hypogean ground-beetle genus Trechus in the Canary Islands. Mol. Phylogenet. Evol. 42 (2007) 687-699
21. Crouau-Roy B. Population studies on pyrenean troglobitic beetles: local genetic differentiation and microgeographic variations in natural populations. Biochem. Syst. Ecol. 14 5 (1986) 521-526
22. Culver D.C. Analysis of simple cave communities. I. Caves as islands. Evolution 24 (1970) 463-474
23. Culver D.C., Kane T.C., Fong D.W., Jones R., Taylor M.A., and Sauereisen S.C. Morphology of cave organisms-is it adaptative?. Mém. Biospéol. 17 (1990) 13-26
24. Culver D.C., Deharveng L., Bedos A., Lewis J.J., Madden M., Reddell J.R., Sket B., Trontelj P., and White D. The mid-latitude biodiversity ridge in terrestrial cave fauna. Ecography 29 (2006) 120-128
25. Deleurance S. La contraction du cycle évolutif des Coléoptères Bathysciinae et Trechinae en milieu souterrain. C. R. Séances Acad. Sci. 247 (1958) 752-753
26. Deleurance-Glaçon S. Contribution à l'étude des coléoptères cavernicoles de la sous-famille des Trechinae. Ann. Spéléol. 18 2 (1963) 227-265
27. Desutter-Grandcolas L., and Grandcolas P. The evolution toward troglobitic life: a phylogenetic reappraisal of climatic relict and local habitat shift hypotheses. Mém. Biospéol. 23 (1996) 57-63
28. Desutter-Grandcolas L., D'Haese C., and Robillard T. The problem of characters susceptible to parallel evolution in phylogenetic reconstructions: a reply to Marquès & Gnaspini (2001) with emphasis on cave life phenotypic evolution. Cladistics 19 (2003) 131-137
29. Deuve T. Nouveaux Trechidae cavernicoles chinois, découverts dans les confins karstiques du Sichuan, du Hubei et du Yunnan (Coleoptera, Adephaga). Rev. Fr. Entomol. (n.s.) 21 (2000) 151-161
30. Deuve T. Le genre Eustra Schmidt-Goebel, 1846, insectes (Coleoptera, Paussidae, Ozaeninae) à genitalia femelles orthotopiques. Zoosystema 23 3 (2001) 547-578
31. Deuve, T., 2004. Illustrated catalogue of the genus Carabus of the world (Coleoptera: Carabidae). Pensoft Publ., Sofia, Moscow, x + 461 pp.
32. Drummond A.J., and Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7 (2007) 214
33. Drummond A.J., Ho S.Y.W., Phillips M.J., and Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 4 5 (2006) e88 10.1371/journal.pbio.0040088
34. Dupré E. Trechini nouveaux ou peu connus de France et d'Espagne (Coléoptères Carabidae). Mém. Biospéol. 18 (1991) 287-299
35. Español F. Un nuevo Hydraphaenops de la provincia de Guipúzcoa (Col. Trechidae). Misc. Zool. 2 3 (1968) 55-58
36. Español F., and Comas J. Un nuevo Aphaenops Bonv. de la vertiente española de los Pirineos (Col., Carabidae, Trechinae). Misc. Zool. 9 (1985) 219-221
37. Faille, A., 2006. Endémisme et adaptation à la vie cavernicole chez les Trechinae Pyrénéens (Coleoptera: Carabidae). Approches moléculaire et morphométrique. Unpublished thesis. Muséum National d'Histoire Naturelle, Paris, 319 pp.
38. Faille A., Déliot P., and Quéinnec E. A new cryptic species of Aphaenops (Coleoptera: Carabidae: Trechinae) from a French Pyrenean cave: congruence between morphometrical and geographical data confirm species isolation. Ann. Soc. Entomol. Fr. (n.s.) 43 3 (2007) 363-370
39. Faille A., Fresneda J., Déliot P., and Bourdeau C. Description du mâle d'Aphaenops catalonicus Escolà & Canció (Coleoptera, Trechinae). Bull. Soc. Entomol. Fr. 111 2 (2006) 247-250
40. Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
41. Fišer C., Sket B., and Trontelj P. A phylogenetic perspective on 160 years of troubled taxonomy of Niphargus (Crustacea: Amphipoda). Zool. Script. 37 6 (2008) 665-680
42. Fresneda J., Salgado J.M., and Ribera I. Phylogeny of western Mediterranean Leptodirini, with an emphasis on genital characters (Coleoptera: Leiodidae: Cholevinae). Syst. Entomol. 32 (2007) 332-358
43. Fresneda J., Bourdeau C., and Faille A. Baronniesia delioti gen. n. sp. n., a new subterranean Leptodirini from the French Pyrenees (Coleoptera: Leiodidae: Cholevinae). Zootaxa 1993 (2009) 1-16
44. Genest L.C. Nouvelles espèces d'Aphaenops et d'Hydraphaenops des Pyrénées Centrales (Coléoptères Trechinae). Mém. Biospéol. 10 (1983) 305-310
45. Gilbert M.T.P., Moore W., Melchior L., and Worobey M. DNA extraction from dry museum beetles without conferring external morphological damage. PLoS ONE 2 3 (2007) e272 10.1371/journal.pone.0000272
46. Grebennikov V.V. Tasmanitachoides belongs to Trechini (Coleoptera: Carabidae): discovery of the larva, its phylogenetic implications and revised key to Trechitae genera. Invertebr. Syst. 22 (2008) 479-488
47. Grebennikov V.V., and Maddison D.R. Phylogenetic analysis of Trechitae (Coleoptera: Carabidae) based on larval morphology, with description of first-instar Phrypeus and a key to genera. Syst. Entomol. 30 (2005) 38-59
48. Grenier A. Description de nouvelles espèces de Coléoptères Français des genres Cionus, Raymondia et Anophthalmus et quelques réflexions sur les yeux de certaines espèces réputées aveugles. Ann. Soc. Entomol. Fr. 33 (1864) 133-140
49. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
50. Howarth F.G. Bioclimatic and geologic factors governing the evolution and distribution of Hawaiian cave insects. Entomol. Gen. 8 1 (1982) 17-26
51. Huelsenbeck J.P., and Ronquist F. MRBAYES: bayesian inference of phylogenetic trees. Bioinformatics 17 (2001) 754-755
52. Jeanne C. Carabiques de la péninsule ibérique (5ème note). Actes Soc. Linn. Bordeaux, Sér. A 10 104 (1967) 1-22
53. Jeannel R. Diagnoses préliminaires de Trechinae [Col. Carabidae] cavernicoles nouveaux de France. Bull. Soc. Entomol. Fr. (1919) 253-255
54. Jeannel R. Les Trechinae de France (Deuxième partie). Ann. Soc. Entomol. Fr. 90 (1922) 295-345 (1921)
55. Jeannel R. Faune cavernicole de la France avec une étude des conditions d'existence dans le domaine souterrain (1926), Lechevalier, Paris 334 pp
56. Jeannel R. Monographie des Trechinae. Morphologie comparée et distribution d'un groupe de Coléoptères. L'Abeille 32 (1926) 221-550
57. Jeannel R. Monographie des Trechinae. Morphologie comparée et distribution d'un groupe de Coléoptères. Troisième Livraison: les Trechini cavernicoles. L'Abeille 35 (1928) 1-808
58. Jeannel R. Un nouvel Aphaenops de la grotte d'Oxibar. Rev. Fr. Entomol. 6 3-4 (1939) 83-85
59. Jeannel R. Faune de France. Coléoptères Carabiques I vol. 39 (1941), Lechevalier, Paris 571 pp
60. Jeannel R. Les fossiles vivants des cavernes (1943), Gallimard, Paris 321 pp
61. Jiménez-Moreno G., and Suc J.P. Middle Miocene latitudinal climatic gradient in Western Europe: evidence from pollen records. Palaeogeog. Palaeoclim. Palaeoecol. 253 (2007) 208-225
62. Juberthie C., and Bouillon M. Présence des Aphaenops (Coléoptères Trechinae) dans le milieu souterrain superficiel des Pyrénées françaises. Mém. Biospéol. 10 (1983) 91-98
63. Kane T.C., Barr Jr. T.C., and Badaracca W.J. Cave beetle genetics: geology and gene flow. Heredity 68 (1992) 277-286
64. Katoh K., and Toh H. Recent developments in the MAFFT multiple sequence alignment program. Brief. Bioinform. 9 4 (2008) 286-298
65. Katoh K., Misawa K., Kuma K., and Miyata T. MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res. 30 14 (2002) 3059-3066
66. Laurenti J.N. Specimen Medicum, Exhibens Synopsin Reptilium Emendatam Cum Experimentis Circa Venena et Antidota Reptilium Austriacorum (1768), Wien 214 pp
67. Lorenz W. A Systematic List of Extant Ground Beetles of the World. (Coleoptera "Geadephaga": Trachypachidae and Carabidae incl. Paussinae, Cicindelinae, Rhysodinae). second ed. (2005), Tutzing, Germany 530p.
68. Marquès A.C., and Gnaspini P. The problem of characters susceptible to parallel evolution in phylogenetic reconstructions: suggestion of a practical method and its application to cave animals. Cladistics 17 (2001) 371-381
69. Monteiro A., and Pierce N.E. Phylogeny of Bicyclus (Lepidoptera: Nymphalidae) inferred from COI, COII, and Ef-1α gene sequences. Mol. Phylogenet. Evol. 18 (2001) 264-281
70. Moravec, P., Uéno, S.-I., Belousov, I.A., 2003. Tribe Trechini. In: Löbl, Smetana (Eds.), Catalogue of Palaearctic Coleoptera, Archostemata, Myxophaga, Adephaga, vol. 1. Apollo Books, Stenstrup, pp. 288-346
71. Ober K.A. Phylogenetic relationships of the carabid subfamily Harpalinae (Coleoptera) based on molecular sequence data. Mol. Phylogenet. Evol. 24 (2002) 228-248
72. Ortuño V.M., Sendra A., Montagud S., and Teruel S. Systématique et biologie d'une espèce paléoendémique hypogée de la péninsule Ibérique: Ildobates neboti Español 1966 (Coleoptera: Carabidae: Dryptinae). Ann. Soc. Entomol. Fr. (n.s.) 40 3-4 (2004) 459-475
73. Peck S.B., and Finston T.L. Galapagos islands troglobites: the question of tropical troglobites, parapatric distributions with eyed sister-species, and their origin by parapatric speciation. Mém. Biospéol. 20 (1993) 19-37
74. Peyerimhoff P.d. Variations de contours et de la chétotaxie chez Trechus (Trechopsis) lapiei Peyer.; démonstration de sa parente phylogénique avec Aphoenops iblis Peyer. Bull. Soc. Entomol. Fr. (1915) 128-133
75. Pons J. DNA-based identification of preys from non-destructive, total DNA extractions of predators using arthropod universal primers. Mol. Ecol. Notes 6 (2006) 623-626
76. Posada D., and Crandall K.A. Modeltest: testing the model of DNA substitution. Bioinformatics 14 9 (1998) 817-818
77. Putzeys J. Trechorum oculatorum Monographia. Stett. Entomol. Zeit. 31 1-3 (1870) 7-48 145-201
78. Racovitza E.G. Essai sur les problèmes biospéologiques. Arch. Zool. Exp. Gén. 6 4ème sér. (1907) 371-488
79. Ribera I., Hernando C., and Aguilera P. Agabus alexandrae n.sp. from Morocco, with a molecular phylogeny of the western Mediterranean species of the A. guttatus group (Coleoptera: Dytiscidae). Ins. Syst. Evol. 32 (2001) 253-262
80. Rivera M.A.J., Howarth F.G., Taiti S., and Roderick G.K. Evolution in Hawaiian cave-adapted isopods (Oniscidea: Philosciidae): vicariant speciation or adaptive shifts?. Mol. Phylogenet. Evol. 25 (2002) 1-9
81. Roncin E., and Deharveng L. Leptogenys khammouanensis sp. nov. (Hymenoptera: Formicidae). A possible troglobitic species of Laos, with a discussion on cave ants. Zool. Sci. 20 (2003) 919-924
82. Rowley D.L., Coddington J.A., Gates M.W., Norrbom A.L., Ochoa R.A., Vandenberg N.J., and Greenstone M.H. Vouchering DNA-barcoded specimens: test of a nondestructive extraction protocol for terrestrial arthropods. Mol. Ecol. Notes 7 (2007) 915-925
83. Shimodaira H., and Hasegawa M. Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16 (1999) 1114-1116
84. Shull V.L., Vogler A.P., Baker M.D., Maddison D.R., and Hammond P.M. Sequence alignment of 18S Ribosomal RNA and the basal relationships of Adephagan beetles: evidence for monophyly of aquatic families and the placement of Trachypachidae. Syst. Biol. 50 (2001) 945-969
85. Simon C., Frati F., Beckenbach A., Crespi B., Liu H., and Flook P. Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 87 (1994) 651-701
86. Sota T., and Vogler A.P. Incongruence of mitochondrial and nuclear gene trees in the Carabid beetles Ohomopterus. Syst. Biol. 50 (2001) 39-59
87. Streiff R., Veyrier R., Audiot P., Meusnier S., and Brouat C. Introgression in natural populations of bioindicators: a case study of Carabus splendens and Carabus punctatoauratus. Mol. Ecol. 14 (2005) 3775-3786
88. *: Phylogenetic Analysis Using Parsimony (* and Other Methods) Version 4 (2002), Sinauer Associates, Sunderland, MA
89. Templeton A.R. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of man and the apes. Evolution 37 (1983) 221-224
90. Uéno S.I., and Clarke A.K. Discovery of a new aphaenopsoid Trechine Beetle (Coleoptera, Trechinae) in northeastern Jiangxi, East China. Elytra, Tokyo 35 1 (2007) 267-278
91. Vanara N. Le karst des Arbailles (Pyrénées-Atlantiques, France). Karstologia 36 (2000) 23-42
92. Vandel A. Biospéologie. La Biologie des Animaux Cavernicoles (1964), Gauthier-Villars, Paris 619 pp
93. Vannier G., and Thibaud J.M. Relation entre l'activité motrice d'une espèce de Collemboles cavernicoles et les variations de température dans son biotope. Rev. Ecol. Biol. Sol. 8 2 (1971) 261-286
94. Vives E. Revision del género Apoduvalius Jeannel (Col. Trechinae). Speleon 25 (1980) 15-21
95. Zhang A.-B., and Sota T. Nuclear gene sequences resolve species phylogeny and mitchondrial introgression in Leptocarabus beetles showing trans-species polymorphisms. Mol. Phylogenet. Evol. 45 (2007) 534-546
96. Zwickl, D.J., 2006. Genetic algorithm approaches for the phylogenetic analysis of large biological sequence datasets under the maximum likelihood criterion. Ph.D. dissertation. The University of Texas at Austin. Available from: .