메뉴 건너뛰기




Volumn 273, Issue 1588, 2006, Pages 887-893

Beyond barcodes: Complex DNA taxonomy of a South Pacific Island radiation

Author keywords

Copelatus; DNA barcoding; Fiji; Species; Taxonomy; Tropical biodiversity

Indexed keywords

DNA; HISTONE H3; MITOCHONDRIAL DNA;

EID: 33745253746     PISSN: 09628452     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rspb.2005.3391     Document Type: Article
Times cited : (94)

References (51)
  • 1
    • 0036794208 scopus 로고    scopus 로고
    • Conservation biology for the biodiversity crisis: A freshwater follow-up
    • doi:10.1046/j.1523-1739.2002.01532.x
    • Abell, R. 2002 Conservation biology for the biodiversity crisis: a freshwater follow-up. Conserv. Biol. 16, 1435-1437. (doi:10.1046/j.1523-1739.2002.01532.x)
    • (2002) Conserv. Biol , vol.16 , pp. 1435-1437
    • Abell, R.1
  • 2
    • 0032482931 scopus 로고    scopus 로고
    • Age and rate of diversification of the Hawaiian silversword alliance (Compositae)
    • doi:10.1073/pnas.95.16.9402
    • Baldwin, B. G. & Sanderson, M. J. 1998 Age and rate of diversification of the Hawaiian silversword alliance (Compositae). Proc. Natl Acad. Sci. USA 95, 9402-9406. (doi:10.1073/pnas.95.16.9402)
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 9402-9406
    • Baldwin, B.G.1    Sanderson, M.J.2
  • 3
    • 3843108102 scopus 로고    scopus 로고
    • MtDNA phylogeny and biogeography of Copelatinae, a highly diverse group of tropical diving beetles (Dytiscidae)
    • doi:10.1016/j.ympev.2004.03.014
    • Balke, M., Ribera, I. & Vogler, A. P. 2004 MtDNA phylogeny and biogeography of Copelatinae, a highly diverse group of tropical diving beetles (Dytiscidae). Mol. Phylogenet. Evol. 32, 866-880. (doi:10.1016/j.ympev.2004.03.014)
    • (2004) Mol. Phylogenet. Evol , vol.32 , pp. 866-880
    • Balke, M.1    Ribera, I.2    Vogler, A.P.3
  • 4
    • 0002745059 scopus 로고    scopus 로고
    • Taxonomic revision of the genus Hydrovatus Motschulsky (Coleoptera, Dytiscidae)
    • Biström, O. 1997 Taxonomic revision of the genus Hydrovatus Motschulsky (Coleoptera, Dytiscidae). Entomol. Basiliensia 19, 57-584.
    • (1997) Entomol. Basiliensia , vol.19 , pp. 57-584
    • Biström, O.1
  • 5
    • 1942519881 scopus 로고    scopus 로고
    • The promise of a DNA taxonomy
    • doi:10.1098/rstb.2003.1447
    • Blaxter, M. L. 2004 The promise of a DNA taxonomy. Phil. Trans. R. Soc. B 359, 669-679. (doi:10.1098/rstb.2003.1447)
    • (2004) Phil. Trans. R. Soc. B , vol.359 , pp. 669-679
    • Blaxter, M.L.1
  • 6
    • 0028303111 scopus 로고
    • Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution
    • Brower, A. V. Z. 1994 Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc. Natl Acad. Sci. USA 91, 6491-6495.
    • (1994) Proc. Natl Acad. Sci. USA , vol.91 , pp. 6491-6495
    • Brower, A.V.Z.1
  • 7
    • 0029782654 scopus 로고    scopus 로고
    • Clines in the genetic distance between two species of island land snails: How 'molecular leakage' mislead us about speciation
    • Clarke, B., Johnson, M. S. & Murray, J. 1996 Clines in the genetic distance between two species of island land snails: how 'molecular leakage' mislead us about speciation. Phil. Trans. R. Soc. B 351, 773-784.
    • (1996) Phil. Trans. R. Soc. B , vol.351 , pp. 773-784
    • Clarke, B.1    Johnson, M.S.2    Murray, J.3
  • 8
    • 0033771358 scopus 로고    scopus 로고
    • TCS: A computer program to estimate gene genealogies
    • doi:10.1046/j.1365-294x.2000.01020.x
    • Clement, M., Posada, D. & Crandall, K. A. 2000 TCS: a computer program to estimate gene genealogies. Mol. Ecol. 9, 1657-1659. (doi:10.1046/j.1365-294x.2000.01020.x)
    • (2000) Mol. Ecol , vol.9 , pp. 1657-1659
    • Clement, M.1    Posada, D.2    Crandall, K.A.3
  • 9
    • 0020869892 scopus 로고
    • Species concept and speciation analysis
    • Cracraft, J. 1983 Species concept and speciation analysis. Curr. Ornithol. 1, 159-187.
    • (1983) Curr. Ornithol , vol.1 , pp. 159-187
    • Cracraft, J.1
  • 10
    • 31344458132 scopus 로고    scopus 로고
    • The unholy trinity; taxonomy, species delimitation and DNA barcoding
    • doi:10.1098/rstb.2005.1722
    • DeSalle, R., Egan, M. G. & Siddall, M. 2005 The unholy trinity; taxonomy, species delimitation and DNA barcoding. Phil. Trans. R. Soc. B 360, 1905-1916. (doi:10.1098/rstb.2005.1722)
    • (2005) Phil. Trans. R. Soc. B , vol.360 , pp. 1905-1916
    • DeSalle, R.1    Egan, M.G.2    Siddall, M.3
  • 11
    • 1642460701 scopus 로고    scopus 로고
    • Global state of biodiversity and loss
    • doi:10.1146/annurev. energy.28.050302.105532
    • Dirzo, R. & Raven, P. H. 2003 Global state of biodiversity and loss. Annu. Rev. Environ. Resour. 28, 137-167. (doi:10.1146/annurev. energy.28.050302.105532)
    • (2003) Annu. Rev. Environ. Resour , vol.28 , pp. 137-167
    • Dirzo, R.1    Raven, P.H.2
  • 12
    • 14944362613 scopus 로고    scopus 로고
    • Conserving taxonomic complexity
    • doi:10.1016/j.tree.2005.01.012
    • Ennos, A. E., French, G. C. & Hollingsworth, P. M. 2005 Conserving taxonomic complexity. Trends Ecol. Evol. 20, 164-168. (doi:10.1016/j.tree.2005.01.012)
    • (2005) Trends Ecol. Evol , vol.20 , pp. 164-168
    • Ennos, A.E.1    French, G.C.2    Hollingsworth, P.M.3
  • 13
    • 85020788302 scopus 로고    scopus 로고
    • Fery, H. 2003 Dytiscidae: V. Taxonomic and distributional notes on Hygrotus Stephens, with emphasis on the Chinese fauna and a key to the Palearctic species (Coleoptera). In Water beetles of China (ed. M. A. Jäch & L. Ji), 3, pp. 133-193. Wien: Zoologisch-Botanische Gesellschaft in Österreich and Wiener Coleopterologenverein (Vienna).
    • Fery, H. 2003 Dytiscidae: V. Taxonomic and distributional notes on Hygrotus Stephens, with emphasis on the Chinese fauna and a key to the Palearctic species (Coleoptera). In Water beetles of China (ed. M. A. Jäch & L. Ji), vol. 3, pp. 133-193. Wien: Zoologisch-Botanische Gesellschaft in Österreich and Wiener Coleopterologenverein (Vienna).
  • 14
    • 0347003623 scopus 로고    scopus 로고
    • Community assembly through adaptive radiation in Hawaiian spiders
    • doi:10.1126/science. 1091875
    • Gillespie, R. 2004 Community assembly through adaptive radiation in Hawaiian spiders. Science 303, 356-359. (doi:10.1126/science. 1091875)
    • (2004) Science , vol.303 , pp. 356-359
    • Gillespie, R.1
  • 15
    • 0036006848 scopus 로고    scopus 로고
    • Arthopods on islands: Colonization, speciation and conservation
    • doi:10.1146/annurev.ento.47.091201.145244
    • Gillespie, R. G. & Roderick, G. K. 2002 Arthopods on islands: colonization, speciation and conservation. Annu. Rev. Entomol. 47, 595-632. (doi:10.1146/annurev.ento.47.091201.145244)
    • (2002) Annu. Rev. Entomol , vol.47 , pp. 595-632
    • Gillespie, R.G.1    Roderick, G.K.2
  • 16
    • 3543138379 scopus 로고    scopus 로고
    • Convergent evolution of Darwin's finches caused by introgressive hybridization and selection
    • Grant, P. R., Grant, B. R., Markert, J. A., Keller, L. F. & Petren, K. 2004 Convergent evolution of Darwin's finches caused by introgressive hybridization and selection. Evolution 58, 1588-1599.
    • (2004) Evolution , vol.58 , pp. 1588-1599
    • Grant, P.R.1    Grant, B.R.2    Markert, J.A.3    Keller, L.F.4    Petren, K.5
  • 17
    • 0037423543 scopus 로고    scopus 로고
    • Biological identifications through DNA barcodes
    • doi:10.1098/rspb.2002.2218
    • Hebert, P. D. N., Cywinska, A., Ball, S. L. & DeWaard, J. R. 2003a Biological identifications through DNA barcodes. Proc. R. Soc. B 270, 313-321. (doi:10.1098/rspb.2002.2218)
    • (2003) Proc. R. Soc. B , vol.270 , pp. 313-321
    • Hebert, P.D.N.1    Cywinska, A.2    Ball, S.L.3    DeWaard, J.R.4
  • 18
    • 0042531561 scopus 로고    scopus 로고
    • Barcoding animal life: Cytochrome c oxidase subunit 1 divergences among closely related species
    • doi:10.1098/rsbl.2003.0025
    • Hebert, P. D. N., Ratnasingham, S. & DeWaard, J. R. 2003b Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species. Proc. R. Soc. B 270(Suppl. 1), S96-S99. (doi:10.1098/rsbl.2003.0025)
    • (2003) Proc. R. Soc. B , vol.270 , Issue.SUPPL. 1
    • Hebert, P.D.N.1    Ratnasingham, S.2    DeWaard, J.R.3
  • 19
    • 8844220527 scopus 로고    scopus 로고
    • Identification of birds through DNA barcodes
    • doi:10.1371/journal.pbio.0020312
    • Hebert, P. D. N., Stoeckle, M. Y., Zemlak, T. S. & Francis, C. M. 2004 Identification of birds through DNA barcodes. PLoS Biol. 2, 1657-1663. (doi:10.1371/journal.pbio.0020312)
    • (2004) PLoS Biol , vol.2 , pp. 1657-1663
    • Hebert, P.D.N.1    Stoeckle, M.Y.2    Zemlak, T.S.3    Francis, C.M.4
  • 20
    • 1942487826 scopus 로고    scopus 로고
    • Now is the time
    • doi:10.1098/rstb.2003.1444
    • Janzen, D. H. 2004 Now is the time. Phil. Trans. R. Soc. B 359, 731-732. (doi:10.1098/rstb.2003.1444)
    • (2004) Phil. Trans. R. Soc. B , vol.359 , pp. 731-732
    • Janzen, D.H.1
  • 21
    • 0035527379 scopus 로고    scopus 로고
    • Molecular and morphological phylogenetic analysis of an insular radiation in pacific black flies (Simulium)
    • doi:10.1080/ 106351501750107431
    • Joy, D. A. & Conn, J. E. 2001 Molecular and morphological phylogenetic analysis of an insular radiation in pacific black flies (Simulium). Syst. Biol. 50, 18-38. (doi:10.1080/ 106351501750107431)
    • (2001) Syst. Biol , vol.50 , pp. 18-38
    • Joy, D.A.1    Conn, J.E.2
  • 23
    • 0036139211 scopus 로고    scopus 로고
    • MEGA2: Molecular evolutionary genetics analysis software
    • doi:10.1093/bioinformatics/17.12.1244
    • Kumar, S., Tamura, K., Jakobsen, I. B. & Nei, M. 2001 MEGA2: molecular evolutionary genetics analysis software. Bioinformatics 17, 1244-1245. (doi:10.1093/bioinformatics/17.12.1244)
    • (2001) Bioinformatics , vol.17 , pp. 1244-1245
    • Kumar, S.1    Tamura, K.2    Jakobsen, I.B.3    Nei, M.4
  • 24
    • 11944257313 scopus 로고
    • The evolution of convergent structure in Caribbean Anolis communities
    • Losos, J. B. 1992 The evolution of convergent structure in Caribbean Anolis communities. Syst. Biol. 41, 403-420.
    • (1992) Syst. Biol , vol.41 , pp. 403-420
    • Losos, J.B.1
  • 26
    • 0036895311 scopus 로고    scopus 로고
    • Revision of the genus Eretes Laporte, 1833 (Coleoptera: Dytiscidae: Dytiscinae: Eretini)
    • doi:10.1076/aqin.24.4.247.8238
    • Miller, K. B. 2002 Revision of the genus Eretes Laporte, 1833 (Coleoptera: Dytiscidae: Dytiscinae: Eretini). Aquat. Insects 24, 247-272. (doi:10.1076/aqin.24.4.247.8238)
    • (2002) Aquat. Insects , vol.24 , pp. 247-272
    • Miller, K.B.1
  • 27
    • 33645785620 scopus 로고    scopus 로고
    • DNA-based species delineation in tropical beetles using nuclear and mitochondrial markers
    • doi:10.1098/rstb.2005.1724
    • Monaghan, M. T., Balke, M., Gregory, T. R. & Vogler, A. 2005 DNA-based species delineation in tropical beetles using nuclear and mitochondrial markers. Phil. Trans. R. Soc. B 360, 1925-1933. (doi:10.1098/rstb.2005.1724)
    • (2005) Phil. Trans. R. Soc. B , vol.360 , pp. 1925-1933
    • Monaghan, M.T.1    Balke, M.2    Gregory, T.R.3    Vogler, A.4
  • 28
    • 0038632326 scopus 로고    scopus 로고
    • Sampling strategies for delimiting species: Genes, individuals and populations in the Liolaemus elongates-kriegi complex (Squamata: Liolaemidae) in Andean-Patagonian South America
    • Morando, M., Avila, L. J. & Sites, J. W. 2003 Sampling strategies for delimiting species: genes, individuals and populations in the Liolaemus elongates-kriegi complex (Squamata: Liolaemidae) in Andean-Patagonian South America. Syst. Biol. 52, 159-185.
    • (2003) Syst. Biol , vol.52 , pp. 159-185
    • Morando, M.1    Avila, L.J.2    Sites, J.W.3
  • 29
    • 8844224149 scopus 로고    scopus 로고
    • DNA barcoding: Promise and pitfalls
    • doi:10.1371/journal.pbio.0020354
    • Moritz, C. & Cicero, C. 2004 DNA barcoding: promise and pitfalls. PLoS Biol. 2, 1529-1531. (doi:10.1371/journal.pbio.0020354)
    • (2004) PLoS Biol , vol.2 , pp. 1529-1531
    • Moritz, C.1    Cicero, C.2
  • 30
    • 0004228937 scopus 로고    scopus 로고
    • Suva: Institute of Pacific Studies, The University of the South Pacific
    • Nunn, P. D. 1998 Pacific island landscapes. Suva: Institute of Pacific Studies, The University of the South Pacific.
    • (1998) Pacific island landscapes
    • Nunn, P.D.1
  • 31
    • 25444514529 scopus 로고    scopus 로고
    • The taxonomic feedback loop: Symbiosis of morphology and molecules
    • doi:10.1098/rsbl.2005.0298
    • Page, T. J., Choy, S. C. & Hughes, J. M. 2005 The taxonomic feedback loop: symbiosis of morphology and molecules. Biol. Lett. 1, 139-142. (doi:10.1098/rsbl.2005.0298)
    • (2005) Biol. Lett , vol.1 , pp. 139-142
    • Page, T.J.1    Choy, S.C.2    Hughes, J.M.3
  • 32
    • 0004183672 scopus 로고    scopus 로고
    • Paris: Societe nouvelle des editions boubee
    • Paulian, R. 1998 Les insectes de Tahiti. Paris: Societe nouvelle des editions boubee.
    • (1998) Les insectes de Tahiti
    • Paulian, R.1
  • 33
    • 0031773680 scopus 로고    scopus 로고
    • MODELTEST: Testing the model of DNA substitution
    • doi:10.1093/bioinformatics/14.9.817
    • Posada, D. & Crandall, K. A. 1998 MODELTEST: testing the model of DNA substitution. Bioinformatics 14, 817-818. (doi:10.1093/bioinformatics/14.9.817)
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.A.2
  • 34
    • 0037500170 scopus 로고    scopus 로고
    • The blind leading the blind: Cryptic subterranean species and DNA taxonomy
    • doi:10.1016/S0169-5347(03)00095-8
    • Proudlove, G. & Wood, P. J. 2003 The blind leading the blind: cryptic subterranean species and DNA taxonomy. Trends Ecol. Evol. 18, 272-273. (doi:10.1016/S0169-5347(03)00095-8)
    • (2003) Trends Ecol. Evol , vol.18 , pp. 272-273
    • Proudlove, G.1    Wood, P.J.2
  • 35
    • 85142142395 scopus 로고    scopus 로고
    • Sanderson, M. J. 2003 r8s: inferring absolute rates of molecular evolution, divergence times in the absence of a molecular clock. Bioinformatics 19, 301-302. (doi:10.1093/bioinformatics/19.2.301)
    • Sanderson, M. J. 2003 r8s: inferring absolute rates of molecular evolution, divergence times in the absence of a molecular clock. Bioinformatics 19, 301-302. (doi:10.1093/bioinformatics/19.2.301)
  • 36
    • 33749536867 scopus 로고    scopus 로고
    • The future of systematics: Assembling the tree of life
    • Seberg, O. 2004 The future of systematics: assembling the tree of life. The Systematist 22, 2-8.
    • (2004) The Systematist , vol.22 , pp. 2-8
    • Seberg, O.1
  • 38
    • 0001050136 scopus 로고
    • On aquatic carnivorous Coleoptera or Dytiscidae
    • Sharp, D. 1882 On aquatic carnivorous Coleoptera or Dytiscidae. Scient. Trans. R. Dubl. Soc. 2, 179-1003.
    • (1882) Scient. Trans. R. Dubl. Soc , vol.2 , pp. 179-1003
    • Sharp, D.1
  • 39
    • 0037058998 scopus 로고    scopus 로고
    • Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: What mtDNA reveals and conceals about modes of speciation in Hawaiian crickets
    • doi:10.1073/pnas.242585899
    • Shaw, K. L. 2002 Conflict between nuclear and mitochondrial DNA phylogenies of a recent species radiation: what mtDNA reveals and conceals about modes of speciation in Hawaiian crickets. Proc. Natl Acad. Sci. USA 99, 16 122-16 127. (doi:10.1073/pnas.242585899)
    • (2002) Proc. Natl Acad. Sci. USA , vol.99
    • Shaw, K.L.1
  • 40
    • 0032766857 scopus 로고    scopus 로고
    • Multiple comparisons of log-likelihoods with applications to phylogenetic inference
    • Shimodaira, H. & Hasegawa, M. 1999 Multiple comparisons of log-likelihoods with applications to phylogenetic inference. Mol. Biol. Evol. 16, 1114-1116.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1114-1116
    • Shimodaira, H.1    Hasegawa, M.2
  • 41
    • 85020804333 scopus 로고    scopus 로고
    • Swofford, D. L. 2002 PAUP*: Phylogenetic analysis using parsimony. Version 4.0b. Sunderland, MA: Sinauer Associates
    • Swofford, D. L. 2002 PAUP*: Phylogenetic analysis using parsimony. Version 4.0b. Sunderland, MA: Sinauer Associates.
  • 43
    • 0035047252 scopus 로고    scopus 로고
    • Using phylogeographic analyses of gene trees to test species status and processes
    • doi:10.1046/j.1365-294x.2001.01199.x
    • Templeton, A. R. 2001 Using phylogeographic analyses of gene trees to test species status and processes. Mol. Ecol. 10, 779-791. (doi:10.1046/j.1365-294x.2001.01199.x)
    • (2001) Mol. Ecol , vol.10 , pp. 779-791
    • Templeton, A.R.1
  • 44
    • 0026662698 scopus 로고
    • A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and sequencing data. III. Cladogram estimation
    • Templeton, A. R., Crandall, K. A. & Sing, C. F. 1992 A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and sequencing data. III. Cladogram estimation. Genetics 132, 619-633.
    • (1992) Genetics , vol.132 , pp. 619-633
    • Templeton, A.R.1    Crandall, K.A.2    Sing, C.F.3
  • 45
    • 0036005519 scopus 로고    scopus 로고
    • Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus)
    • doi:10.1080/ 106351502753475880
    • Wiens, J. J. & Penkrot, T. A. 2002 Delimiting species using DNA and morphological variation and discordant species limits in spiny lizards (Sceloporus). Syst. Biol. 51, 69-91. (doi:10.1080/ 106351502753475880)
    • (2002) Syst. Biol , vol.51 , pp. 69-91
    • Wiens, J.J.1    Penkrot, T.A.2
  • 46
    • 0345094918 scopus 로고    scopus 로고
    • Recent radiation of endemic Caribbean Drosophila of the dunni subgroup inferred from multilocus DNA sequence variation
    • Wilder, J. A. & Hollocher, H. 2003 Recent radiation of endemic Caribbean Drosophila of the dunni subgroup inferred from multilocus DNA sequence variation. Evolution 57, 2566-2579.
    • (2003) Evolution , vol.57 , pp. 2566-2579
    • Wilder, J.A.1    Hollocher, H.2
  • 47
    • 1642297400 scopus 로고    scopus 로고
    • Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification
    • doi:10.1111/j.1096-0031.2003.00008.x
    • Will, K. W. & Rubinoff, D. 2004 Myth of the molecule: DNA barcodes for species cannot replace morphology for identification and classification. Cladistics 20, 47-55. (doi:10.1111/j.1096-0031.2003.00008.x)
    • (2004) Cladistics , vol.20 , pp. 47-55
    • Will, K.W.1    Rubinoff, D.2
  • 48
    • 0037298304 scopus 로고    scopus 로고
    • The encyclopedia of life
    • doi:10.1016/S0169-5347(02)00040-X
    • Wilson, E. O. 2003 The encyclopedia of life. Trends Ecol. Evol. 18, 77-80. (doi:10.1016/S0169-5347(02)00040-X)
    • (2003) Trends Ecol. Evol , vol.18 , pp. 77-80
    • Wilson, E.O.1
  • 49
    • 0642309746 scopus 로고    scopus 로고
    • GAPCODER automates the use of indel characters in phylogenetic analysis
    • doi:10.1186/1471-2105-4-6
    • Young, N. D. & Healy, J. 2003 GAPCODER automates the use of indel characters in phylogenetic analysis. BMC Bioinform. 4, 6. (doi:10.1186/1471-2105-4-6)
    • (2003) BMC Bioinform , vol.4 , pp. 6
    • Young, N.D.1    Healy, J.2
  • 50
    • 0000062264 scopus 로고
    • Neuer Beitrag zur Kenntnis der Schwimmkäfer. Wien
    • Zimmermann, A. 1928 Neuer Beitrag zur Kenntnis der Schwimmkäfer. Wien. Entomol. Zeit. 44, 165-187.
    • (1928) Entomol. Zeit , vol.44 , pp. 165-187
    • Zimmermann, A.1
  • 51
    • 0000793364 scopus 로고
    • The geography of mitochondrial DNA variation in two sympatric sparrows
    • Zink, R. M. 1991 The geography of mitochondrial DNA variation in two sympatric sparrows. Evolution 45, 329-339.
    • (1991) Evolution , vol.45 , pp. 329-339
    • Zink, R.M.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.