Desert springs: Deep phylogeographic structure in an ancient endemic crustacean (phreatomerus latipes)

PLoS ONE

Volumn 7, Issue 7, 2012, Pages

  Guzik, Michelle T ^a   Adams, Mark A ^a,b   Murphy, Nicholas P ^c   Cooper, Steven J B ^a,b   Austin, Andrew D ^a  

^a UNIVERSITY OF ADELAIDE   (Australia)

^b SOUTH AUSTRALIAN MUSEUM   (Australia)

^c LA TROBE UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ALLOENZYME; MITOCHONDRIAL DNA;

ANIMAL TISSUE; ARTICLE; AUSTRALIA; CLIMATE; COI GENE; CRUSTACEA; DESERT SPRING; DNA ISOLATION; DNA SEQUENCE; GENE; GENE AMPLIFICATION; GENE LOCUS; GENETIC ANALYSIS; GENETIC VARIABILITY; HAPLOTYPE; LANDSCAPE; NATURAL SPRING; NONHUMAN; NUCLEOTIDE SEQUENCE; PHREATOMERUS LATIPES; PHYLOGENY; PHYLOGEOGRAPHY; POPULATION GENETICS;

ANIMALS; CRUSTACEA; DESERT CLIMATE; DNA, MITOCHONDRIAL; FRESH WATER; GENETIC LOCI; GENETIC VARIATION; HAPLOTYPES; ISOENZYMES; PHYLOGEOGRAPHY; SPATIO-TEMPORAL ANALYSIS;

CRUSTACEA; INVERTEBRATA; MYA; PHREATOICIDAE; PHREATOMERUS; PHREATOMERUS LATIPES;

EID: 84864020121     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0037642     Document Type: Article

References (73)

1. Byrne M, Yeates DK, Joseph L, Kearny M, Bowler J, et al. (2008) Birth of a biome: insights into the assembly and maintenance of the Australian arid zone biota. Molecular Ecology 17: 4398-4417.
2. Pianka ER, (1981) Diversity and adaptive radiations of Australian desert lizards. In: Keast A, editors. pp. 1375-1392 editor. Ecological biogeography of Australia. The Hague: Dr W. Junk.
3. Schodde R, editor (1982) Origin, adaptation and evolution in birds in arid Australia. Adelaide: Peacock Publications. 191-224 p.
4. Shattuck SO, (2006) Australian ants: their biology and identification. Collingwood, Victoria: CSIRO Publishing.
5. Timms BV, (2001) Large freshwater lakes in arid Australia: A review of their limnology and threats to their future. Lakes & Reservoirs: Research & Management 6: 183-196.
6. Miller PJ (1987) Affinities, origin and adaptive features of the Australian Desert Goby Chlamydogobius eremius (Zietz, 1896) (Teleostei: Gobiidae) Journal of Natural History 21: 687-705.
7. Bowler JM, (1982) Aridity in the late Tertiary and Quaternary of Australia. In: Barker WR, Greenslade PJM, editors. pp. 35-45 editors. Evolution of the flora and fauna of arid Australia. Adelaide: Peacock Publications.
8. Fujioka T, Chappell J, Fifield K, Rhodes E, (2009) Australian desert dune fields initiated with Pliocene-Pleistocene global climatic shift. Geology 37: 51-54.
9. Fujioka T, Chappell J, Honda M, Yatsevich I, Fifield LK, Fabel D, (2005) Global cooling initiated stony deserts in central Australia 2-4 Ma, dated by cosmogenic 21Ne-10Be. Geology 33: 993-996.
10. Chapple DG, Keogh JS, (2004) Parallel adaptive radiations in arid and temperate Australia: molecular phylogeography and systematics of the Egernia whitii (Lacertilia: Scincidae) species group. Biological Journal of the Linnean Society 83: 157-173.
11. Byrne M, Steane DA, Joseph L, Yeates DK, Jordan GJ, et al. (2011) Decline of a biome: evolution, contraction, fragmentation, extinction and invasion of the Australian mesic zone biota. Journal of Biogeography 38: 1635-1656.
12. Cooper SJB, Bradbury JH, Saint KM, Leys R, Austin AD, et al. (2007) Subterranean archipelago in the Australian arid zone: mitochondrial DNA phylogeography of amphipods from central Western Australia. Molecular Ecology 16: 1533-1544.
13. Cooper SJB, Harvey MS, Saint KM, Main BY, (2011) Deep phylogeographic structuring of populations of the trapdoor spider Moggridgea tingle (Migidae) from southwestern Australia: evidence for long-term refugia within refugia. Molecular Ecology 20: 3219-3236.
14. Cooper SJB, Saint KM, Taiti S, Austin AD, Humphreys WF, (2008) Subterranean archipelago: mitochondrial DNA phylogeography of stygobitic isopods (Oniscidea: Haloniscus) from the Yilgarn region of Western Australia. Invertebrate Systematics 122: 195-203.
15. Murphy NP, Adams M, Austin AD, (2009) Independent colonization and extensive cryptic speciation of freshwater amphipods in the isolated groundwater springs of Australia's Great Artesian Basin. Molecular Ecology 18: 109-122.
16. Myers MJ, Sperling FAH, Resh VH, (2001) Dispersal of two species of Trichoptera from desert springs: conservation implications for isolated vs connected populations Journal of Insect Conservation 5: 207-215.
17. Fensham RJ, Price RJ, (2004) Ranking spring wetlands in the Great Artesian Basin of Australia using endemicity and isolation of plant species. Biological and Conservation 119: 41-50.
18. Kodric-Brown A, Brown JH, (1993) Highly structured fish communities in Australian desert springs. Ecology 74: 1847-1855.
19. Ponder WF, Hershler R, Jenkins B, (1989) An endemic radiation of hydrobiid snails from artesian springs in northern South Australia: their taxonomy, physiology, distribution and anatomy. Malacologia 31 1-140.
20. Chilton C, (1922) A new isopod from central Australia belonging to the Phreatoicidae. Transactions of the Royal Society of South Australia 47: 23-33.
21. de Deckker P, (1979) Ostracods from the mound springs area between Strangways and Curdimuka, South Australia. Proceedings of the Royal Society of South Australia 103: 155-168.
22. Harris CS, (1992) Mound springs: South Australian conservation initiatives. Rangelands Journal 14: 157-173.
23. Ponder WF, Eggler P, Coglan DJ, (1995) Genetic differentiation of aquatic snails (Gastropoda: Hydrobiidae) from artesian springs in arid Australia. Biological Joumal of the Linnean Society 56: 553-596.
24. Worthington Wilmer J, Elkin C, Wilcox C, Murray L, Niejalke D, et al. (2008) The influence of multiple dispersal mechanisms and landscape structure on population clustering and connectivity in fragmented artesian spring snail populations. Molecular Ecology 17: 3733-3751.
25. King RA, (2009) Two new genera and species of chiltoniid amphipods (Crustacea: Amphipoda: Talitroidea) from freshwater mound springs in South Australia. Zootaxa 2293: 35-52.
26. Murphy NP, Guzik MT, Worthington Wilmer J, (2010) Understanding the influence of landscape and dispersal on species distributions in fragmented groundwater dependent springs. Freshwater Biology 55: 2499-2509.
27. Gotch TB, Adams M, Murphy NP, Austin AD, (2008) A molecular systematic overview of wolf spiders associated with Great Artesian Basin springs in South Australia: evolutionary affinities and an assessment of metapopulation structure in two species. Invertebrate Systematics 22: 151-165.
28. Murphy NP, Breed MF, Guzik MT, Cooper SJB, Austin AD (In press) Phylogeography of artesian spring snails in the Australian desert. Journal of Biogeography.
29. Abrams KM, Guzik MT, Cooper SJB, Humphreys WF, King RA, et al. (2012) What lies beneath: molecular phylogenetics and ancestral state reconstruction of the ancient subterranean Australian Parabathynellidae (Syncarida, Crustacea). Molecular Phylogenetics and Evolution http://dx.doi.org/10.1016/j.ympev.2012.03.010.
30. Cooper SJB, Hinze S, Leys R, Watts CHS, Humphreys WF, (2002) Islands under the desert: molecular systematics and evolutionary origins of stygobitic water beetles (Coleoptera: Dytiscidae) from central Western Australia. Invertebrate Systematics 16: 589-598.
31. Leys R, Watts CHS, (2008) Systematics and evolution of the Australian subterranean hydroporine diving beetles (Dytiscidae), with notes on Carabhydrus. Invertebrate Systematics 22: 217-225.
32. Leys R, Watts CHS, Cooper SJB, Humphreys WF, (2003) Evolution of subterranean diving beetles (Coleoptera: Dytiscidae: Hydroporini, Bidessini) in the arid zone of Australia. Evolution 57: 2819-2834.
33. Habel JC, Assmann T, Schmitt T, Avise JC, (2010) Relict species: from past to future. In: Habel JC, Assmann T, editors. editors. Relict species: phylogeography and conservation biology. Berlin, Heidelberg: Springer.
34. Mitchell BD, (1985) Limnology of mound springs and temporary pools south and west of Lake Eyre. In: Greenslade J, Joseph L, Reeves A, editors. editors. South Australias mound springs. Adelaide: Nature Conservation Society of South Australia Inc.
35. Wilson GDF, (2008) Global diversity of isopod crustaceans (Crustacea; Isopoda) in freshwater. Hydrobiologia 595: 231-240.
36. Bohonak AJ, (1999) Dispersal, gene flow, and population structure. Quarterly Review of Biology 74: 21-45.
37. Bohonak AJ, Jenkins DG, (2003) Ecological and evolutionary significance of dispersal by freshwater invertebrates. Ecology Letters 6: 783-796.
38. Wilson GDF, Humphrey CL, Coglan DJ, Gray K-A, Johnson RJ, (2009) Monsoon-influenced speciation patterns in a species flock of Eophreatoicus Nicholls (Isopoda; Crustacea). Molecular Phylogenetics and Evolution 51: 349-364.
39. Magee JW, Bowler JM, Miller GH, Williams DLG, (1995) Stratigraphy, sedimentology, chronology and palaeohydrology of Quaternary lacustrine deposits at Madigan Gulf, Lake Eyre, south Australia. Palaeogeography, Palaeoclimatology, Palaeoecology 113: 3-42.
40. Magee JW, Miller GH, Spooner NA, Questiaux D, (2005) Continuous 150 k.y. monsoon record from Lake Eyre, Australia: Insolation-forcing implications and unexpected Holocene failure. Geology 32: 885-888.
41. Schultz MB, Ierodiaconou DA, Smith SA, Horwitz P, Ricardson AMM, et al. (2008) Sea-level changes and palaeo-ranges: reconstruction of ancient shorelines and river drainages and the phylogeography of the Australian land crayfish Engaeus sericatus Clark (Decapoda: Parastacidae). Molecular Ecology 17: 5291-5314.
42. Guzik MT, Cooper SJB, Humphreys WF, Ong S, Kawakami T, et al. (2011) Evidence for population fragmentation within subterranean aquatic habitat in the Western Australian desert. Heredity 107: 215-230.
43. Walsh PS, Metzger DA, Higuchi R, (1991) Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material. BioTechniques 10: 506-513.
44. Folmer O, Black M, Hoeh W, Lutz R, Vrijenoek R, (1994) DNA primers for amplification of mitochondrial cytochrome c oxidase subunit 1 from diverse metazoan invertebrates. Molecular Marine Biology and Biotechnology 3: 294-299.
45. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series 41: 95-98.
46. Thompson JD, Higgins DG, Gibson TJ, (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Research 22: 4673-4680.
47. Gouws G, Stewart BA, (2007) From genetic structure to wetland conservation: a freshwater isopod Paramphisopus palustris (Phreatoicidea: Amphisopidae) from the Swan Coastal Plain, Western Australia. Hydrobiologia 589: 249-263.
48. Wilson GDF, Edgecombe GD, (2003) The Triassic isopod Protamphisopus wianamattensis (Chilton) and comparison with extant taxa (Crustacea, Phreatoicidea). Journal of Paleontology 77: 454-470.
49. Huelsenbeck JP, Bollback JP, (2001) Empirical and hierarchical Bayesian estimation of ancestral states. Systematic Biology 50: 351-366.
50. Posada D, Crandall KA, (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14: 817-818.
51. Rambaut A, Drummond AJ, (2007) Tracer: MCMC Trace Analysis Package. 1.4 ed.
52. Excoffier L, Laval G, Schneider S, (2005) Arlequin version 3.1: An integrated software package for population genetics data analysis. 3.1 ed.
53. Fu X-Y, (1997) Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
54. Tajima F, (1989) Statistical Method for Testing the Neutral Mutation Hypothesis by DNA Polymorphism. Genetics 123: 585-595.
55. Schneider S, Excoffier L, (1999) Estimation of past demographic parameters from the distribution of pairwise differences when the mutation rates very among sites: application to human mitochondrial DNA. Genetics 152: 1079-1089.
56. Clement M, Posada D, Crandall K, (2000) TCS: a computer program to estimate gene genealogies. Molecular Ecology 9: 1657-1660.
57. Drummond AJ, Rambaut A, (2007) BEAST: Bayesian Evolutionary Analysis Sampling Trees 1.4.7 ed.
58. Brower AVZ, (1994) Rapid morphological radiation and covergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proceedings of the National Academy of Science USA 91: 6491-6495.
59. Richardson BJ, Baverstock PR, Adams M, (1986) Allozyme Electrophoresis. A Handbook for Animal Systematic and Population Studies. Sydney: Academic Press.
60. Horner P, Adams M, (2007) A molecular systematic assessment of species boundaries in Australian Cryptoblepharus (Reptilia: Squamata: Scincidae): a case study for the combined use of allozymes and morphology to explore cryptic biodiversity. Beagle pp. 1-19.
61. Raymond M, Rousset F, (1995) GENEPOP (version 1.2): population genetics software for exact tests and ecumenicism. Heredity 86: 248-249.
62. Guillot G, Leblois R, Coulon A, Frantz AC, (2009) Statistical methods in spatial genetics. Molecular Ecology 18: 4734-4756.
63. Ballard JWO, Whitlock MC, (2004) The incomplete natural history of mitochondria. Molecular Ecology pp. 729-744.
64. Prescott JR, Habermehl MA, (2008) Luminescence dating of spring mound deposits in the southwestern Great Artesian Basin, northern South Australia. Australian Journal of Earth Sciences 55: 167-181.
65. Alley NF, (1998) Cainozoic stratigraphy, palaeoenvironments and geological evolution of the Lake Eyre Basin. Palaeogeography, Palaeoclimatology, Palaeoecology 144: 239-263.
66. Callen RA, (1977) Late cainozoic environments of part of Northeastern South Australia. Journal of the Geological Society of Australia 24: 151-169.
67. Wilke T, Schultheiß R, Albrecht C, (2009) As Time Goes by: A Simple Fool's Guide to Molecular Clock Approaches in Invertebrates*. American Malacological Bulletin 27: 25-45.
68. Bowler JM, Kotsonis A, Lawrence CR, (2006) Environmental evolution of the mallee region, Western Murray Basin. Proceedings of the Royal Society of Victoria 118: 161-210.
69. Hill RS, (1994) The history of selected Australian taxa. In: Hill RS, editors. pp. 390-419 editor. History of Australian Vegetation: Cretaceous to Recent Cambridge, UK: Cambridge University Press.
70. Green AJ, Jenkins KM, Bell D, Morris PJ, Kingsford RT, (2008) The potential role of waterbirds in dispersing invertebrates and plants in arid Australia. Freshwater Biology 53: 380-392.
71. Unmack PJ, (2001) Biogeography of Australian freshwater fishes. Journal of Biogeography 28: 1053-1089.
72. Coyne JA, Orr HA, (2004) Speciation Sunderland, Massachusetts: Sinauer Associates.
73. Harvey MS, (2002) Short-range endemism among the Australian fauna: some examples from non-marine environments. Invertebrate Systematics 16: 555-570.