메뉴 건너뛰기




Volumn 32, Issue 6, 2015, Pages 1461-1473

Initial molecular-level response to artificial selection for increased aerobic metabolism occurs primarily through changes in gene expression

Author keywords

bank vole; mammals; maximum metabolic rate; RNA Seq; selection experiment; standing genetic variation

Indexed keywords

RNA; TRANSCRIPTOME;

EID: 84929490632     PISSN: 07374038     EISSN: 15371719     Source Type: Journal    
DOI: 10.1093/molbev/msv038     Document Type: Article
Times cited : (27)

References (89)
  • 2
    • 30044446861 scopus 로고    scopus 로고
    • The hnRNPs F and H2 bind to similar sequences to influence gene expression
    • Alkan S, Martincic K, Milcarek C. 2006. The hnRNPs F and H2 bind to similar sequences to influence gene expression. Biochem J. 393: 361-371.
    • (2006) Biochem J. , vol.393 , pp. 361-371
    • Alkan, S.1    Martincic, K.2    Milcarek, C.3
  • 3
    • 34249711964 scopus 로고    scopus 로고
    • Hepatic fibroblast growth factor 21 is regulated by PPAR- and is a key mediator of hepatic lipid metabolism in ketotic states
    • Badman MK, Pissios P, Kennedy AR, Koukos G, Flier JS, Maratos-Flier E. 2007. Hepatic fibroblast growth factor 21 is regulated by PPAR- and is a key mediator of hepatic lipid metabolism in ketotic states. Cell Metab. 5:426-437.
    • (2007) Cell Metab. , vol.5 , pp. 426-437
    • Badman, M.K.1    Pissios, P.2    Kennedy, A.R.3    Koukos, G.4    Flier, J.S.5    Maratos-Flier, E.6
  • 4
    • 84897858777 scopus 로고    scopus 로고
    • The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms
    • Baldwin-Brown JG, Long AD, Thornton KR. 2015. The power to detect quantitative trait loci using resequenced, experimentally evolved populations of diploid, sexual organisms. Mol Biol Evol. 31(4):1040-1055.
    • (2015) Mol Biol Evol. , vol.31 , Issue.4 , pp. 1040-1055
    • Baldwin-Brown, J.G.1    Long, A.D.2    Thornton, K.R.3
  • 5
    • 80054759105 scopus 로고    scopus 로고
    • Molecular spandrels: Tests of adaptation at the genetic level
    • Barrett RDH, Hoekstra HE. 2011. Molecular spandrels: tests of adaptation at the genetic level. Nat Rev Genet. 12:767-780.
    • (2011) Nat Rev Genet. , vol.12 , pp. 767-780
    • Barrett, R.D.H.1    Hoekstra, H.E.2
  • 6
    • 37549030093 scopus 로고    scopus 로고
    • Adaptation from standing genetic variation
    • Barrett RDH, Schluter D. 2008. Adaptation from standing genetic variation. Trends Ecol Evol. 23:38-44.
    • (2008) Trends Ecol Evol. , vol.23 , pp. 38-44
    • Barrett, R.D.H.1    Schluter, D.2
  • 12
    • 0032533162 scopus 로고    scopus 로고
    • Specific features of glycogen metabolism in the liver
    • Bollen M, Keppens S, Stalmans W. 1998. Specific features of glycogen metabolism in the liver. Biochem J. 336:19-31.
    • (1998) Biochem J. , vol.336 , pp. 19-31
    • Bollen, M.1    Keppens, S.2    Stalmans, W.3
  • 13
    • 4544274011 scopus 로고    scopus 로고
    • Aphrodisin, an aphrodisiac lipocalin secreted in hamster vaginal secretions
    • Briand L, Trotier D, Pernollet J-C. 2004. Aphrodisin, an aphrodisiac lipocalin secreted in hamster vaginal secretions. Peptides 25: 1545-1552.
    • (2004) Peptides , vol.25 , pp. 1545-1552
    • Briand, L.1    Trotier, D.2    Pernollet, J.-C.3
  • 17
    • 84860717143 scopus 로고    scopus 로고
    • Parallel selection mapping using artificially selected mice reveals body weight control loci
    • Chan YF, Jones FC, McConnell E, Bryk J, Bunger L, Tautz D. 2012. Parallel selection mapping using artificially selected mice reveals body weight control loci. Curr Biol. 22:794-800.
    • (2012) Curr Biol. , vol.22 , pp. 794-800
    • Chan, Y.F.1    Jones, F.C.2    McConnell, E.3    Bryk, J.4    Bunger, L.5    Tautz, D.6
  • 18
    • 84903374217 scopus 로고    scopus 로고
    • Learning ability in bank voles selected for high aerobic metabolism, predatory behaviour and herbivorous capability
    • Chrzascik KM, Sadowska ET, Rudolf A, Koteja P. 2014. Learning ability in bank voles selected for high aerobic metabolism, predatory behaviour and herbivorous capability. Physiol Behav. 135: 143-151.
    • (2014) Physiol Behav. , vol.135 , pp. 143-151
    • Chrzascik, K.M.1    Sadowska, E.T.2    Rudolf, A.3    Koteja, P.4
  • 20
    • 77957151956 scopus 로고    scopus 로고
    • SolexaQA: At-A-glance quality assessment of Illumina second-generation sequencing data
    • Cox MP, Peterson DA, Biggs PJ. 2010. SolexaQA: At-A-glance quality assessment of Illumina second-generation sequencing data. BMC Bioinformatics 11:485.
    • (2010) BMC Bioinformatics , vol.11 , pp. 485
    • Cox, M.P.1    Peterson, D.A.2    Biggs, P.J.3
  • 21
    • 60849139395 scopus 로고    scopus 로고
    • GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists
    • Eden E, Navon R, Steinfeld I, Lipson D, Yakhini Z. 2009. GOrilla: A tool for discovery and visualization of enriched GO terms in ranked gene lists. BMC Bioinformatics 10:48.
    • (2009) BMC Bioinformatics , vol.10 , pp. 48
    • Eden, E.1    Navon, R.2    Steinfeld, I.3    Lipson, D.4    Yakhini, Z.5
  • 24
    • 84880076219 scopus 로고    scopus 로고
    • Gene expression drives local adaptation in humans
    • Fraser HB. 2013. Gene expression drives local adaptation in humans. Genome Res. 23:1089-1096.
    • (2013) Genome Res. , vol.23 , pp. 1089-1096
    • Fraser, H.B.1
  • 30
    • 34247855863 scopus 로고    scopus 로고
    • The locus of evolution: Evo devo and the genetics of adaptation
    • Hoekstra HE, Coyne JA. 2007. The locus of evolution: evo devo and the genetics of adaptation. Evolution 61:995-1016.
    • (2007) Evolution , vol.61 , pp. 995-1016
    • Hoekstra, H.E.1    Coyne, J.A.2
  • 36
    • 84862524625 scopus 로고    scopus 로고
    • Functional genomic architecture of predisposition to voluntary exercise in mice: Expression QTL in the brain
    • Kelly SA, Nehrenberg DL, Hua K, Garland T, Pomp D. 2012. Functional genomic architecture of predisposition to voluntary exercise in mice: expression QTL in the brain. Genetics 181((2):643-654.
    • (2012) Genetics , vol.181 , Issue.2 , pp. 643-654
    • Kelly, S.A.1    Nehrenberg, D.L.2    Hua, K.3    Garland, T.4    Pomp, D.5
  • 37
    • 84906087319 scopus 로고    scopus 로고
    • Quantitative genomics of voluntary exercise in mice: Transcriptional analysis and mapping of expression QTL in muscle
    • Kelly SA, Nehrenberg DL, Hua K, Garland T, Pomp D. 2014. Quantitative genomics of voluntary exercise in mice: transcriptional analysis and mapping of expression QTL in muscle. Physiol Genomics. 46(16):593-601.
    • (2014) Physiol Genomics. , vol.46 , Issue.16 , pp. 593-601
    • Kelly, S.A.1    Nehrenberg, D.L.2    Hua, K.3    Garland, T.4    Pomp, D.5
  • 38
    • 0016669094 scopus 로고
    • Evolution at two levels in humans and chimpanzees
    • King M-C, Wilson AC. 1975. Evolution at two levels in humans and chimpanzees. Science 188:107-116.
    • (1975) Science , vol.188 , pp. 107-116
    • King, M.-C.1    Wilson, A.C.2
  • 39
    • 83355175374 scopus 로고    scopus 로고
    • PoPoolation2: Identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)
    • Kofler R, Pandey RV, Schlotterer C. 2011. PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq). Bioinformatics 27:3435-3436.
    • (2011) Bioinformatics , vol.27 , pp. 3435-3436
    • Kofler, R.1    Pandey, R.V.2    Schlotterer, C.3
  • 40
    • 84865123842 scopus 로고    scopus 로고
    • Gowinda: Unbiased analysis of gene set enrichment for genome-wide association studies
    • Kofler R, Schlotterer C. 2012. Gowinda: unbiased analysis of gene set enrichment for genome-wide association studies. Bioinformatics 28: 2084-2085.
    • (2012) Bioinformatics , vol.28 , pp. 2084-2085
    • Kofler, R.1    Schlotterer, C.2
  • 41
    • 84893126398 scopus 로고    scopus 로고
    • A guide for the design of evolve and resequencing studies
    • Kofler R, Schlotterer C. 2015. A guide for the design of evolve and resequencing studies. Mol Biol Evol. 31(2):474-483.
    • (2015) Mol Biol Evol. , vol.31 , Issue.2 , pp. 474-483
    • Kofler, R.1    Schlotterer, C.2
  • 43
    • 84930739198 scopus 로고    scopus 로고
    • Correlated responses to a multi-directional selection in bank voles (Myodes glareolus): Reproductive parameters
    • Prague, June 30-July 3 Programme and Abstract Book: 98
    • Koteja P, Chrzascik KM, Sadowska ET, Oldakowski L. 2010. Correlated responses to a multi-directional selection in bank voles (Myodes glareolus): reproductive parameters. Annual Main Meeting of the Society for Experimental Biology, Prague, June 30-July 3 Programme and Abstract Book: 98.
    • (2010) Annual Main Meeting of the Society for Experimental Biology
    • Koteja, P.1    Chrzascik, K.M.2    Sadowska, E.T.3    Oldakowski, L.4
  • 45
    • 84859210032 scopus 로고    scopus 로고
    • Fast gapped-read alignment with Bowtie 2
    • Langmead B, Salzberg SL. 2012. Fast gapped-read alignment with Bowtie 2. Nat Methods. 9:357-359.
    • (2012) Nat Methods. , vol.9 , pp. 357-359
    • Langmead, B.1    Salzberg, S.L.2
  • 46
    • 84859104219 scopus 로고    scopus 로고
    • The genetic differentiation at quantitative trait loci under local adaptation
    • Le Corre V, Kremer A. 2012. The genetic differentiation at quantitative trait loci under local adaptation. Mol Ecol. 21(7):1548-1566.
    • (2012) Mol Ecol. , vol.21 , Issue.7 , pp. 1548-1566
    • Le Corre, V.1    Kremer, A.2
  • 48
    • 34548637364 scopus 로고    scopus 로고
    • Clinical, biochemical and genetic features of glycogen debranching enzyme deficiency
    • Lucchiari S, Santoro D, Pagliarani S, Comi GP. 2007. Clinical, biochemical and genetic features of glycogen debranching enzyme deficiency. Acta Myol. 26(1):72.
    • (2007) Acta Myol. , vol.26 , Issue.1 , pp. 72
    • Lucchiari, S.1    Santoro, D.2    Pagliarani, S.3    Comi, G.P.4
  • 51
    • 80255127234 scopus 로고    scopus 로고
    • Cutadapt removes adapter sequences from highthroughput sequencing reads
    • Martin M. 2011. Cutadapt removes adapter sequences from highthroughput sequencing reads. EMBnet J. 17:10-12.
    • (2011) EMBnet J. , vol.17 , pp. 10-12
    • Martin, M.1
  • 52
    • 84876818452 scopus 로고    scopus 로고
    • The loci of repeated evolution: A catalog of genetic hotspots of phenotypic variation
    • Martin A, Orgogozo V. 2013. The loci of repeated evolution: A catalog of genetic hotspots of phenotypic variation. Evolution 67(5):1235-1250.
    • (2013) Evolution , vol.67 , Issue.5 , pp. 1235-1250
    • Martin, A.1    Orgogozo, V.2
  • 57
    • 0040124427 scopus 로고
    • Linkage disequilibrium due to random genetic drift in finite subdivided populations
    • Ohta T. 1982. Linkage disequilibrium due to random genetic drift in finite subdivided populations. Proceedings of the National Academy of Sciences 79(6):1940-1944.
    • (1982) Proceedings of the National Academy of Sciences , vol.79 , Issue.6 , pp. 1940-1944
    • Ohta, T.1
  • 59
    • 84867574655 scopus 로고    scopus 로고
    • Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles
    • Orozco-Terwengel P, Kapun M, Nolte V, Kofler R, Flatt T, Schlatterer C. 2012. Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles. Mol Ecol. 21:4931-4941.
    • (2012) Mol Ecol. , vol.21 , pp. 4931-4941
    • Orozco-Terwengel, P.1    Kapun, M.2    Nolte, V.3    Kofler, R.4    Flatt, T.5    Schlatterer, C.6
  • 60
    • 47649115949 scopus 로고    scopus 로고
    • Genetic estimates of contemporary effective population size: What can they tell us about the importance of genetic stochasticity for wild population persistence
    • Palstra FP, Ruzzante DE. 2008. Genetic estimates of contemporary effective population size: what can they tell us about the importance of genetic stochasticity for wild population persistence? Mol Ecol. 17: 3428-3447.
    • (2008) Mol Ecol , vol.17 , pp. 3428-3447
    • Palstra, F.P.1    Ruzzante, D.E.2
  • 62
    • 84890895105 scopus 로고    scopus 로고
    • Dynamics of adaptive alleles in divergently selected body weight lines of chickens
    • Carlborg. O.
    • Pettersson ME, Johansson AM, Siegel PB, Carlborg. O. 2013. Dynamics of adaptive alleles in divergently selected body weight lines of chickens. G3 3:2305-2312.
    • (2013) G3 , vol.3 , pp. 2305-2312
    • Pettersson, M.E.1    Johansson, A.M.2    Siegel, P.B.3
  • 65
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR:A Bioconductor package for differential expression analysis of digital gene expression data
    • Robinson MD, McCarthy DJ, Smyth GK. 2010. edgeR: A Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics (Oxford, England) 26:139-140.
    • (2010) Bioinformatics (Oxford, England) , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 66
    • 84855258100 scopus 로고    scopus 로고
    • The QTN program and the alleles that matter for evolution: All that's gold does not glitter
    • Rockman MV. 2012. The QTN program and the alleles that matter for evolution: All that's gold does not glitter. Evolution 66:1-17.
    • (2012) Evolution , vol.66 , pp. 1-17
    • Rockman, M.V.1
  • 67
    • 9144246375 scopus 로고    scopus 로고
    • Comparative study of methyl-CpG-binding domain proteins
    • Roloff TC, Ropers HH, Nuber UA. 2003. Comparative study of methyl-CpG-binding domain proteins. BMC Genomics 4:1.
    • (2003) BMC Genomics , vol.4 , pp. 1
    • Roloff, T.C.1    Ropers, H.H.2    Nuber, U.A.3
  • 71
    • 15944422909 scopus 로고    scopus 로고
    • Genetic correlations between basal and maximum metabolic rates in a wild rodent: Consequences for evolution of endothermy
    • Sadowska ET, Labocha MK, Baliga K, Stanisz A, Wroblewska AK, Jagusiak W, Koteja P. 2005. Genetic correlations between basal and maximum metabolic rates in a wild rodent: consequences for evolution of endothermy. Evolution 59:672-681.
    • (2005) Evolution , vol.59 , pp. 672-681
    • Sadowska, E.T.1    Labocha, M.K.2    Baliga, K.3    Stanisz, A.4    Wroblewska, A.K.5    Jagusiak, W.6    Koteja, P.7
  • 72
    • 84928214396 scopus 로고    scopus 로고
    • Combining experimental evolution with next-generation sequencing: A powerful tool to study adaptation from standing genetic variation
    • Schlotterer C, Kofler R, Versace E, Tobler R, Franssen SU. 2014. Combining experimental evolution with next-generation sequencing: A powerful tool to study adaptation from standing genetic variation. Heredity doi: 10. 1038/hdy. 2014. 86.
    • (2014) Heredity
    • Schlotterer, C.1    Kofler, R.2    Versace, E.3    Tobler, R.4    Franssen, S.U.5
  • 75
    • 84911470108 scopus 로고    scopus 로고
    • Selection for high activity-related aerobic metabolism does not alter the capacity of non-shivering thermogenesis in bank voles
    • Stawski C, Koteja P, Sadowska ET, Jefimow M, Wojciechowski MS. 2015. Selection for high activity-related aerobic metabolism does not alter the capacity of non-shivering thermogenesis in bank voles. Comp Biochem Physiol A Mol Integr Physiol. 180:51-56.
    • (2015) Comp Biochem Physiol A Mol Integr Physiol , vol.180 , pp. 51-56
    • Stawski, C.1    Koteja, P.2    Sadowska, E.T.3    Jefimow, M.4    Wojciechowski, M.S.5
  • 76
    • 51249106485 scopus 로고    scopus 로고
    • The loci of evolution: How predictable is genetic evolution
    • Stern DL, Orgogozo V. 2008. The loci of evolution: how predictable is genetic evolution? Evolution 62:2155-2177.
    • (2008) Evolution , vol.62 , pp. 2155-2177
    • Stern, D.L.1    Orgogozo, V.2
  • 77
    • 77349116666 scopus 로고    scopus 로고
    • Novel OBP genes similar to hamster Aphrodisin in the bank vole, Myodes glareolus
    • Stopkova R, Zdrahal Z, Ryba S, Sedo O, Sandera M, Stopka P. 2010. Novel OBP genes similar to hamster Aphrodisin in the bank vole, Myodes glareolus. BMC Genomics 11:45.
    • (2010) BMC Genomics , vol.11 , pp. 45
    • Stopkova, R.1    Zdrahal, Z.2    Ryba, S.3    Sedo, O.4    Sandera, M.5    Stopka, P.6
  • 78
    • 14844313712 scopus 로고    scopus 로고
    • INVITED REVIEW: Using genome scans of DNA polymorphism to infer adaptive population divergence
    • Storz JF. 2005. INVITED REVIEW: Using genome scans of DNA polymorphism to infer adaptive population divergence. Mol Ecol. 14(3):671-688.
    • (2005) Mol Ecol. , vol.14 , Issue.3 , pp. 671-688
    • Storz, J.F.1
  • 79
    • 84897654018 scopus 로고    scopus 로고
    • Alternative reproductive tactics and sex-biased gene expression: The study of the bulb mite transcriptome
    • Stuglik MT, Babik W, Prokop Z, Radwan J. 2014. Alternative reproductive tactics and sex-biased gene expression: the study of the bulb mite transcriptome. Ecol Evol. 4:623-632.
    • (2014) Ecol Evol. , vol.4 , pp. 623-632
    • Stuglik, M.T.1    Babik, W.2    Prokop, Z.3    Radwan, J.4
  • 80
    • 80052568653 scopus 로고    scopus 로고
    • SCFFBXO22 regulates histone H3 lysine 9 and 36 methylation levels by targeting histone demethylase KDM4A for ubiquitin-mediated proteasomal degradation
    • Tan M-KM, Lim H-J, Harper JW. 2011. SCFFBXO22 regulates histone H3 lysine 9 and 36 methylation levels by targeting histone demethylase KDM4A for ubiquitin-mediated proteasomal degradation. Mol Cell Biol. 31:3687-3699.
    • (2011) Mol Cell Biol. , vol.31 , pp. 3687-3699
    • M-Km, T.1    Lim, H.-J.2    Harper, J.W.3
  • 82
    • 59149100147 scopus 로고    scopus 로고
    • Experimental evolution reveals natural selection on standing genetic variation
    • Teotonio H, Chelo IM, Bradić M, Rose MR, Long AD. 2009. Experimental evolution reveals natural selection on standing genetic variation. Nat Genet. 41:251-257.
    • (2009) Nat Genet. , vol.41 , pp. 251-257
    • Teotonio, H.1    Chelo, I.M.2    Bradić, M.3    Rose, M.R.4    Long, A.D.5
  • 83
    • 84865674998 scopus 로고    scopus 로고
    • Evidence of widespread selection on standing variation in Europe at height-Associated SNPs
    • Genetic Investigation of ANthropometric Traits (GIANT) Consortium.
    • Turchin MC, Chiang CW, Palmer CD, Sankararaman S, Reich D, Hirschhorn JN. Genetic Investigation of ANthropometric Traits (GIANT) Consortium. 2012. Evidence of widespread selection on standing variation in Europe at height-Associated SNPs. Nat Genet. 44(9):1015-1019.
    • (2012) Nat Genet. , vol.44 , Issue.9 , pp. 1015-1019
    • Turchin, M.C.1    Chiang, C.W.2    Palmer, C.D.3    Sankararaman, S.4    Reich, D.5    Hirschhorn, J.N.6
  • 84
    • 84862564386 scopus 로고    scopus 로고
    • Investigating natural variation in Drosophila courtship song by the evolve and resequence approach
    • Turner TL, Miller PM. 2012. Investigating natural variation in Drosophila courtship song by the evolve and resequence approach. Genetics 191:633-642.
    • (2012) Genetics , vol.191 , pp. 633-642
    • Turner, T.L.1    Miller, P.M.2
  • 85
    • 79953735688 scopus 로고    scopus 로고
    • Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster
    • Turner TL, Stewart AD, Fields AT, Rice WR, Tarone AM. 2011. Population-based resequencing of experimentally evolved populations reveals the genetic basis of body size variation in Drosophila melanogaster. PLoS Genet. 7:e1001336.
    • (2011) PLoS Genet , vol.7 , pp. e1001336
    • Turner, T.L.1    Stewart, A.D.2    Fields, A.T.3    Rice, W.R.4    Tarone, A.M.5
  • 86
    • 84872483518 scopus 로고    scopus 로고
    • Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments
    • Vijay N, Poelstra JW, Kunstner A, Wolf JB. 2013. Challenges and strategies in transcriptome assembly and differential gene expression quantification. A comprehensive in silico assessment of RNA-seq experiments. Mol Ecol. 22(3):620-634.
    • (2013) Mol Ecol. , vol.22 , Issue.3 , pp. 620-634
    • Vijay, N.1    Poelstra, J.W.2    Kunstner, A.3    Wolf, J.B.4
  • 89
    • 33847057226 scopus 로고    scopus 로고
    • The evolutionary significance of cis-regulatory mutations
    • Wray GA. 2007. The evolutionary significance of cis-regulatory mutations. Nat Rev Genet. 8:206-216.
    • (2007) Nat Rev Genet. , vol.8 , pp. 206-216
    • Wray, G.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.