-
1
-
-
41149087678
-
Mechanistic duality of transcription factor function in phytochrome signaling
-
B. Al-Sady, E.A. Kikis, E. Monte, P.H. Quail Mechanistic duality of transcription factor function in phytochrome signaling Proc. Natl Acad. Sci. U S A 105 2008 2232 2237
-
(2008)
Proc. Natl Acad. Sci. U S A
, vol.105
, pp. 2232-2237
-
-
Al-Sady, B.1
Kikis, E.A.2
Monte, E.3
Quail, P.H.4
-
2
-
-
33746428382
-
Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation
-
B. Al-Sady, W. Ni, S. Kircher, E. Schäfer, P.H. Quail Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation Mol. Cell 23 2006 439 446
-
(2006)
Mol. Cell
, vol.23
, pp. 439-446
-
-
Al-Sady, B.1
Ni, W.2
Kircher, S.3
Schäfer, E.4
Quail, P.H.5
-
3
-
-
44949106384
-
Decoding of light signals by plant phytochromes and their interacting proteins
-
G. Bae, G. Choi Decoding of light signals by plant phytochromes and their interacting proteins Annu. Rev. Plant Biol 59 2008 281 311
-
(2008)
Annu. Rev. Plant Biol
, vol.59
, pp. 281-311
-
-
Bae, G.1
Choi, G.2
-
4
-
-
84864871502
-
Brassinosteroid, gibberellin and phytochrome impinge on a common transcription module in Arabidopsis
-
M.-Y. Bai, J.-X. Shang, E. Oh, M. Fan, Y. Bai, R. Zentella, T.-p. Sun, Z.-Y Wang Brassinosteroid, gibberellin and phytochrome impinge on a common transcription module in Arabidopsis Nat. Cell Biol 14 2012 810 814
-
(2012)
Nat. Cell Biol
, vol.14
, pp. 810-814
-
-
Bai, M.-Y.1
Shang, J.-X.2
Oh, E.3
Fan, M.4
Bai, Y.5
Zentella, R.6
Sun, T.-P.7
Wang, Z.-Y.8
-
5
-
-
33747823564
-
MEME: Discovering and analyzing DNA and protein sequence motifs
-
T.L. Bailey, N. Williams, C. Misleh, W.W. Li MEME: discovering and analyzing DNA and protein sequence motifs Nucleic Acids Res 34 2006 W369 W373
-
(2006)
Nucleic Acids Res
, vol.34
, pp. W369-W373
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
6
-
-
79958090979
-
DREME: Motif discovery in transcription factor ChIP-seq data
-
T.L. Bailey, N. Williams, C. Misleh, W.W. Li DREME: motif discovery in transcription factor ChIP-seq data Bioinformatics 27 2011 1653 1659
-
(2011)
Bioinformatics
, vol.27
, pp. 1653-1659
-
-
Bailey, T.L.1
Williams, N.2
Misleh, C.3
Li, W.W.4
-
7
-
-
2942685745
-
Constitutive Photomorphogenesis 1 and multiple photoreceptors control degradation of Phytochrome Interacting Factor 3, a transcription factor required for light signaling in Arabidopsis
-
D. Bauer, A. Viczian, S. Kircher, T. Nobis, R. Nitschke, T. Kunkel, K.C.S. Panigrahi, E. Adam, E. Fejes, E. Schäfer et al. Constitutive Photomorphogenesis 1 and multiple photoreceptors control degradation of Phytochrome Interacting Factor 3, a transcription factor required for light signaling in Arabidopsis Plant Cell 16 2004 1433 1445
-
(2004)
Plant Cell
, vol.16
, pp. 1433-1445
-
-
Bauer, D.1
Viczian, A.2
Kircher, S.3
Nobis, T.4
Nitschke, R.5
Kunkel, T.6
Panigrahi, K.C.S.7
Adam, E.8
Fejes, E.9
Schäfer, E.10
-
8
-
-
80054728495
-
Animal transcription networks as highly connected, quantitative continua
-
M.D. Biggin Animal transcription networks as highly connected, quantitative continua Dev. Cell 21 2011 611 626
-
(2011)
Dev. Cell
, vol.21
, pp. 611-626
-
-
Biggin, M.D.1
-
9
-
-
75949108066
-
Galaxy: A web-based genome analysis tool for experimentalists
-
F.M. Ausubel R. Brent R.E. Kingston D.D. Moore J.G. Seidman J.A. Smith K. Struhl John Wiley & Sons, Inc. Chichester, UK
-
D. Blankenberg, G.V. Kuster, N. Coraor, G. Ananda, R. Lazarus, M. Mangan, A. Nekrutenko, J. Taylor Galaxy: a web-based genome analysis tool for experimentalists F.M. Ausubel R. Brent R.E. Kingston D.D. Moore J.G. Seidman J.A. Smith K. Struhl Current Protocols in Molecular Biology 2010 John Wiley & Sons, Inc. Chichester, UK
-
(2010)
Current Protocols in Molecular Biology
-
-
Blankenberg, D.1
Kuster, G.V.2
Coraor, N.3
Ananda, G.4
Lazarus, R.5
Mangan, M.6
Nekrutenko, A.7
Taylor, J.8
-
10
-
-
75649139471
-
Overlapping promoter targeting by Elk-1 and other divergent ETS-domain transcription factor family members
-
J. Boros, A. O'Donnell, I.J. Donaldson, A. Kasza, L. Zeef, A.D. Sharrocks Overlapping promoter targeting by Elk-1 and other divergent ETS-domain transcription factor family members Nucleic Acids Res 37 2009 7368 7380
-
(2009)
Nucleic Acids Res
, vol.37
, pp. 7368-7380
-
-
Boros, J.1
O'Donnell, A.2
Donaldson, I.J.3
Kasza, A.4
Zeef, L.5
Sharrocks, A.D.6
-
11
-
-
0032506243
-
C-Myc target gene specificity is determined by a post-DNAbinding mechanism
-
K.E. Boyd, J. Wells, J. Gutman, S.M. Bartley, P.J. Farnham c-Myc target gene specificity is determined by a post-DNAbinding mechanism Proc. Natl Acad. Sci. U S A 95 1998 13887 13892
-
(1998)
Proc. Natl Acad. Sci. U S A
, vol.95
, pp. 13887-13892
-
-
Boyd, K.E.1
Wells, J.2
Gutman, J.3
Bartley, S.M.4
Farnham, P.J.5
-
12
-
-
35548942264
-
Phytochrome interacting factors: Central players in phytochrome-mediated light signaling networks
-
A. Castillon, H. Shen, E. Huq Phytochrome interacting factors: central players in phytochrome-mediated light signaling networks Trends Plant Sci 12 2007 514 521
-
(2007)
Trends Plant Sci
, vol.12
, pp. 514-521
-
-
Castillon, A.1
Shen, H.2
Huq, E.3
-
13
-
-
84879951956
-
Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis
-
K.N. Chang, S. Zhong, M.T. Weirauch, G. Hon, M. Pelizzola, H. Li, S.S. Huang, R.J. Schmitz, M.A. Urich, D. Kuo et al. Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis eLife 2 2013 e00675
-
(2013)
ELife
, vol.2
, pp. e00675
-
-
Chang, K.N.1
Zhong, S.2
Weirauch, M.T.3
Hon, G.4
Pelizzola, M.5
Li, H.6
Huang, S.S.7
Schmitz, R.J.8
Urich, M.A.9
Kuo, D.10
-
14
-
-
84865712383
-
Understanding transcriptional regulation by integrative analysis of transcription factor binding data
-
C. Cheng, R. Alexander, R. Min, J. Leng, K.Y. Yip, J. Rozowsky, K.-K. Yan, X. Dong, S. Djebali, Y. Ruan et al. Understanding transcriptional regulation by integrative analysis of transcription factor binding data Genome Res 22 2012 1658 1667
-
(2012)
Genome Res
, vol.22
, pp. 1658-1667
-
-
Cheng, C.1
Alexander, R.2
Min, R.3
Leng, J.4
Yip, K.Y.5
Rozowsky, J.6
Yan, K.-K.7
Dong, X.8
Djebali, S.9
Ruan, Y.10
-
15
-
-
38549167870
-
A molecular framework for light and gibberellin control of cell elongation
-
M. de Lucas, J.M. Daviere, M. Rodriguez-Falcon, M. Pontin, J.M. Iglesias-Pedraz, S. Lorrain, C. Fankhauser, M.A. Blazquez, E. Titarenko, S. Prat A molecular framework for light and gibberellin control of cell elongation Nature 451 2008 480 484
-
(2008)
Nature
, vol.451
, pp. 480-484
-
-
De Lucas, M.1
Daviere, J.M.2
Rodriguez-Falcon, M.3
Pontin, M.4
Iglesias-Pedraz, J.M.5
Lorrain, S.6
Fankhauser, C.7
Blazquez, M.A.8
Titarenko, E.9
Prat, S.10
-
16
-
-
13744263437
-
BHLH class transcription factors take centre stage in phytochrome signalling
-
P.D. Duek, C. Fankhauser bHLH class transcription factors take centre stage in phytochrome signalling Trends Plant Sci 10 2005 51 54
-
(2005)
Trends Plant Sci
, vol.10
, pp. 51-54
-
-
Duek, P.D.1
Fankhauser, C.2
-
17
-
-
68949213578
-
Insights from genomic profiling of transcription factors
-
P.J. Farnham Insights from genomic profiling of transcription factors Nat. Rev. Genet 10 2009 605 616
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 605-616
-
-
Farnham, P.J.1
-
18
-
-
38549142539
-
Coordinated regulation of Arabidopsis thaliana development by light and gibberellins
-
S. Feng, C. Martinez, G. Gusmaroli, Y. Wang, J. Zhou, F. Wang, L. Chen, L. Yu, J.M. Iglesias-Pedraz, S. Kircher et al. Coordinated regulation of Arabidopsis thaliana development by light and gibberellins Nature 451 2008 475 479
-
(2008)
Nature
, vol.451
, pp. 475-479
-
-
Feng, S.1
Martinez, C.2
Gusmaroli, G.3
Wang, Y.4
Zhou, J.5
Wang, F.6
Chen, L.7
Yu, L.8
Iglesias-Pedraz, J.M.9
Kircher, S.10
-
20
-
-
84871844925
-
DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila
-
W.W. Fisher, J.J. Li, A.S. Hammonds, J.B. Brown, B.D. Pfeiffer, R. Weiszmann, S. MacArthur, S. Thomas, J.A. Stamatoyannopoulos, M.B. Eisen et al. DNA regions bound at low occupancy by transcription factors do not drive patterned reporter gene expression in Drosophila Proc. Natl Acad. Sci. U S A 109 2012 21330 21335
-
(2012)
Proc. Natl Acad. Sci. U S A
, vol.109
, pp. 21330-21335
-
-
Fisher, W.W.1
Li, J.J.2
Hammonds, A.S.3
Brown, J.B.4
Pfeiffer, B.D.5
Weiszmann, R.6
Macarthur, S.7
Thomas, S.8
Stamatoyannopoulos, J.A.9
Eisen, M.B.10
-
21
-
-
72049106410
-
Phytochrome functions in Arabidopsis development
-
K.A. Franklin, P.H. Quail Phytochrome functions in Arabidopsis development J. Exp. Bot 61 2010 11 24
-
(2010)
J. Exp. Bot
, vol.61
, pp. 11-24
-
-
Franklin, K.A.1
Quail, P.H.2
-
22
-
-
84055200494
-
PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature
-
K.A. Franklin, S.H. Lee, D. Patel, S.V. Kumar, A.K. Spartz, C. Gu, S. Ye, P. Yu, G. Breen, J.D. Cohen et al. PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature Proc. Natl Acad. Sci. U S A 108 2011 20231 20235
-
(2011)
Proc. Natl Acad. Sci. U S A
, vol.108
, pp. 20231-20235
-
-
Franklin, K.A.1
Lee, S.H.2
Patel, D.3
Kumar, S.V.4
Spartz, A.K.5
Gu, C.6
Ye, S.7
Yu, P.8
Breen, G.9
Cohen, J.D.10
-
23
-
-
23744483843
-
Profiling histone modification patterns in plants using genomic tiling microarrays
-
A.-V. Gendrel, Z. Lippman, R. Martienssen, V. Colot Profiling histone modification patterns in plants using genomic tiling microarrays Nature Methods 2 2005 213 218
-
(2005)
Nature Methods
, vol.2
, pp. 213-218
-
-
Gendrel, A.-V.1
Lippman, Z.2
Martienssen, R.3
Colot, V.4
-
24
-
-
25844449770
-
Galaxy: A platform for interactive large-scale genome analysis
-
B. Giardine, C. Riemer, R.C. Hardison, R. Burhans, L. Elnitski, P. Shah, Y. Zhang, D. Blankenberg, I. Albert, J. Taylor et al. Galaxy: a platform for interactive large-scale genome analysis Genome Res 15 2005 1451 1455
-
(2005)
Genome Res
, vol.15
, pp. 1451-1455
-
-
Giardine, B.1
Riemer, C.2
Hardison, R.C.3
Burhans, R.4
Elnitski, L.5
Shah, P.6
Zhang, Y.7
Blankenberg, D.8
Albert, I.9
Taylor, J.10
-
25
-
-
77955801615
-
Galaxy: A comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
-
J. Goecks, A. Nekrutenko, J. Taylor, T. The Galaxy Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences Genome Biol 11 2010 R86
-
(2010)
Genome Biol
, vol.11
, pp. R86
-
-
Goecks, J.1
Nekrutenko, A.2
Taylor, J.3
The Galaxy, T.4
-
26
-
-
84876955991
-
Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
-
R. Gordan, N. Shen, I. Dror, T. Zhou, J. Horton, R. Rohs, M.L. Bulyk Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape Cell Reports 3 2013 1093 1104
-
(2013)
Cell Reports
, vol.3
, pp. 1093-1104
-
-
Gordan, R.1
Shen, N.2
Dror, I.3
Zhou, T.4
Horton, J.5
Rohs, R.6
Bulyk, M.L.7
-
27
-
-
81255210794
-
Transcriptional regulation in Saccharomyces cerevisiae: Transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators
-
S. Hahn, E.T. Young Transcriptional regulation in Saccharomyces cerevisiae: transcription factor regulation and function, mechanisms of initiation, and roles of activators and coactivators Genetics 189 2011 705 736
-
(2011)
Genetics
, vol.189
, pp. 705-736
-
-
Hahn, S.1
Young, E.T.2
-
28
-
-
84861376536
-
Interactions between HLH and bHLH factors modulate light-regulated plant development
-
Y. Hao, E. Oh, G. Choi, Z. Liang, Z.-Y Wang Interactions between HLH and bHLH factors modulate light-regulated plant development Mol. Plant 5 2012 688 697
-
(2012)
Mol. Plant
, vol.5
, pp. 688-697
-
-
Hao, Y.1
Oh, E.2
Choi, G.3
Liang, Z.4
Wang, Z.-Y.5
-
29
-
-
34547641224
-
Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family
-
P.C. Hollenhorst, A.A. Shah, C. Hopkins, B.J. Graves Genome-wide analyses reveal properties of redundant and specific promoter occupancy within the ETS gene family Genes Dev 21 2007 1882 1894
-
(2007)
Genes Dev
, vol.21
, pp. 1882-1894
-
-
Hollenhorst, P.C.1
Shah, A.A.2
Hopkins, C.3
Graves, B.J.4
-
30
-
-
84865526135
-
Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling
-
P. Hornitschek, M.V. Kohnen, S. Lorrain, J. Rougemont, K. Ljung, I. Lopez-Vidriero, J.M. Franco-Zorrilla, R. Solano, M. Trevisan, S. Pradervand et al. Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling Plant J 71 2012 699 711
-
(2012)
Plant J
, vol.71
, pp. 699-711
-
-
Hornitschek, P.1
Kohnen, M.V.2
Lorrain, S.3
Rougemont, J.4
Ljung, K.5
Lopez-Vidriero, I.6
Franco-Zorrilla, J.M.7
Solano, R.8
Trevisan, M.9
Pradervand, S.10
-
31
-
-
72449130407
-
Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers
-
P. Hornitschek, S. Lorrain, V. Zoete, O. Michielin, C. Fankhauser Inhibition of the shade avoidance response by formation of non-DNA binding bHLH heterodimers EMBO J 28 2009 3893 3902
-
(2009)
EMBO J
, vol.28
, pp. 3893-3902
-
-
Hornitschek, P.1
Lorrain, S.2
Zoete, V.3
Michielin, O.4
Fankhauser, C.5
-
32
-
-
4644286644
-
PHYTOCHROME-INTERACTING FACTOR 1, a basic helix-loop-helix transcription factor, is a critical regulator of the chlorophyll biosynthetic pathway
-
E. Huq, B. Al-Sady, M. Hudson, C. Kim, K. Apel, P.H. Quail PHYTOCHROME-INTERACTING FACTOR 1, a basic helix-loop-helix transcription factor, is a critical regulator of the chlorophyll biosynthetic pathway Science 305 2004 1937 1941
-
(2004)
Science
, vol.305
, pp. 1937-1941
-
-
Huq, E.1
Al-Sady, B.2
Hudson, M.3
Kim, C.4
Apel, K.5
Quail, P.H.6
-
33
-
-
33847042609
-
Light-regulated transcriptional networks in higher plants
-
Y. Jiao, O.S. Lau, X.W. Deng Light-regulated transcriptional networks in higher plants Nat. Rev. Genet 8 2007 217 230
-
(2007)
Nat. Rev. Genet
, vol.8
, pp. 217-230
-
-
Jiao, Y.1
Lau, O.S.2
Deng, X.W.3
-
34
-
-
39149145798
-
The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms
-
R. Khanna, Y. Shen, C.M. Marion, A. Tsuchisaka, A. Theologis, E. Schafer, P.H. Quail The basic helix-loop-helix transcription factor PIF5 acts on ethylene biosynthesis and phytochrome signaling by distinct mechanisms Plant Cell 19 2007 3915 3929
-
(2007)
Plant Cell
, vol.19
, pp. 3915-3929
-
-
Khanna, R.1
Shen, Y.2
Marion, C.M.3
Tsuchisaka, A.4
Theologis, A.5
Schafer, E.6
Quail, P.H.7
-
35
-
-
34447519218
-
Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters
-
M. Kininis, B.S. Chen, A.G. Diehl, A.G. Clark, G.D. Isaacs, T. Zhang, A.C. Siepel, W.L. Kraus Genomic analyses of transcription factor binding, histone acetylation, and gene expression reveal mechanistically distinct classes of estrogen-regulated promoters Mol. Cell. Biol 27 2007 5090 5104
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 5090-5104
-
-
Kininis, M.1
Chen, B.S.2
Diehl, A.G.3
Clark, A.G.4
Isaacs, G.D.5
Zhang, T.6
Siepel, A.C.7
Kraus, W.L.8
-
36
-
-
61449135764
-
High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4
-
M.A. Koini, L. Alvey, T. Allen, C.A. Tilley, N.P. Harberd, G.C. Whitelam, K.A. Franklin High temperature-mediated adaptations in plant architecture require the bHLH transcription factor PIF4 Curr. Biol 19 2009 408 413
-
(2009)
Curr. Biol
, vol.19
, pp. 408-413
-
-
Koini, M.A.1
Alvey, L.2
Allen, T.3
Tilley, C.A.4
Harberd, N.P.5
Whitelam, G.C.6
Franklin, K.A.7
-
37
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
-
B. Langmead, C. Trapnell, M. Pop, S. Salzberg Ultrafast and memory-efficient alignment of short DNA sequences to the human genome Genome Biol 10 2009 R25
-
(2009)
Genome Biol
, vol.10
, pp. R25
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.4
-
38
-
-
78650496948
-
PIFs: Pivotal components in a cellular signaling hub
-
P. Leivar, P.H. Quail PIFs: pivotal components in a cellular signaling hub Trends in Plant Science 16 2011 19 28
-
(2011)
Trends in Plant Science
, vol.16
, pp. 19-28
-
-
Leivar, P.1
Quail, P.H.2
-
39
-
-
57649111510
-
Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomorphogenesis in darkness
-
P. Leivar, E. Monte, Y. Oka, T. Liu, C. Carle, A. Castillon, E. Huq, P.H. Quail Multiple phytochrome-interacting bHLH transcription factors repress premature seedling photomorphogenesis in darkness Curr. Biol 18 2008 1815 1823
-
(2008)
Curr. Biol
, vol.18
, pp. 1815-1823
-
-
Leivar, P.1
Monte, E.2
Oka, Y.3
Liu, T.4
Carle, C.5
Castillon, A.6
Huq, E.7
Quail, P.H.8
-
40
-
-
84861403941
-
Dynamic antagonism between phytochromes and PIF family basic helix-loop-helix factors induces selective reciprocal responses to light and shade in a rapidly responsive transcriptional network in Arabidopsis
-
P. Leivar, J.M. Tepperman, M.M. Cohn, E. Monte, B. Al-Sady, E. Erickson, P.H. Quail Dynamic antagonism between phytochromes and PIF family basic helix-loop-helix factors induces selective reciprocal responses to light and shade in a rapidly responsive transcriptional network in Arabidopsis The Plant Cell Online 24 2012 1398 1419
-
(2012)
The Plant Cell Online
, vol.24
, pp. 1398-1419
-
-
Leivar, P.1
Tepperman, J.M.2
Cohn, M.M.3
Monte, E.4
Al-Sady, B.5
Erickson, E.6
Quail, P.H.7
-
41
-
-
73249135405
-
Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings
-
P. Leivar, J.M. Tepperman, E. Monte, R.H. Calderon, T.L. Liu, P.H. Quail Definition of early transcriptional circuitry involved in light-induced reversal of PIF-imposed repression of photomorphogenesis in young Arabidopsis seedlings Plant Cell 21 2009 3535 3553
-
(2009)
Plant Cell
, vol.21
, pp. 3535-3553
-
-
Leivar, P.1
Tepperman, J.M.2
Monte, E.3
Calderon, R.H.4
Liu, T.L.5
Quail, P.H.6
-
42
-
-
84859864129
-
Linking photoreceptor excitation to changes in plant architecture
-
L. Li, K. Ljung, G. Breton, R.J. Schmitz, J. Pruneda-Paz, C. Cowing-Zitron, B.J. Cole, L.J. Ivans, U.V. Pedmale, H.-S. Jung et al. Linking photoreceptor excitation to changes in plant architecture Genes Dev 26 2012 785 790
-
(2012)
Genes Dev
, vol.26
, pp. 785-790
-
-
Li, L.1
Ljung, K.2
Breton, G.3
Schmitz, R.J.4
Pruneda-Paz, J.5
Cowing-Zitron, C.6
Cole, B.J.7
Ivans, L.J.8
Pedmale, U.V.9
Jung, H.-S.10
-
43
-
-
79953709415
-
The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding
-
X.-Y. Li, S. Thomas, P. Sabo, M. Eisen, J. Stamatoyannopoulos, M. Biggin The role of chromatin accessibility in directing the widespread, overlapping patterns of Drosophila transcription factor binding Genome Biol 12 2011 R34
-
(2011)
Genome Biol
, vol.12
, pp. R34
-
-
Li, X.-Y.1
Thomas, S.2
Sabo, P.3
Eisen, M.4
Stamatoyannopoulos, J.5
Biggin, M.6
-
44
-
-
84859582058
-
Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function
-
C.R. Lickwar, F. Mueller, S.E. Hanlon, J.G. McNally, J.D. Lieb Genome-wide protein-DNA binding dynamics suggest a molecular clutch for transcription factor function Nature 484 2012 251 255
-
(2012)
Nature
, vol.484
, pp. 251-255
-
-
Lickwar, C.R.1
Mueller, F.2
Hanlon, S.E.3
McNally, J.G.4
Lieb, J.D.5
-
45
-
-
84878230501
-
PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings
-
X. Liu, C.-Y. Chen, K.-C. Wang, M. Luo, R. Tai, L. Yuan, M. Zhao, S. Yang, G. Tian, Y. Cui et al. PHYTOCHROME INTERACTING FACTOR3 associates with the histone deacetylase HDA15 in repression of chlorophyll biosynthesis and photosynthesis in etiolated Arabidopsis seedlings The Plant Cell Online 25 2013 1258 1273
-
(2013)
The Plant Cell Online
, vol.25
, pp. 1258-1273
-
-
Liu, X.1
Chen, C.-Y.2
Wang, K.-C.3
Luo, M.4
Tai, R.5
Yuan, L.6
Zhao, M.7
Yang, S.8
Tian, G.9
Cui, Y.10
-
46
-
-
37749031518
-
Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors
-
S. Lorrain, T. Allen, P.D. Duek, G.C. Whitelam, C. Fankhauser Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors Plant J 53 2008 312 323
-
(2008)
Plant J
, vol.53
, pp. 312-323
-
-
Lorrain, S.1
Allen, T.2
Duek, P.D.3
Whitelam, G.C.4
Fankhauser, C.5
-
47
-
-
70350482083
-
Phytochrome interacting factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light
-
S. Lorrain, M. Trevisan, S. Pradervand, C. Fankhauser Phytochrome interacting factors 4 and 5 redundantly limit seedling de-etiolation in continuous far-red light Plant J 60 2009 449 461
-
(2009)
Plant J
, vol.60
, pp. 449-461
-
-
Lorrain, S.1
Trevisan, M.2
Pradervand, S.3
Fankhauser, C.4
-
48
-
-
62549099049
-
Plant development: PIF4 integrates diverse environmental signals
-
D. Lucyshyn, P.A. Wigge Plant development: PIF4 integrates diverse environmental signals Curr. Biol 19 2009 R265 R266
-
(2009)
Curr. Biol
, vol.19
, pp. R265-R266
-
-
Lucyshyn, D.1
Wigge, P.A.2
-
49
-
-
68849103482
-
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
-
S. MacArthur, X.-Y. Li, J. Li, J. Brown, H.C. Chu, L. Zeng, B. Grondona, A. Hechmer, L. Simirenko, S. Keranen et al. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions Genome Biol 10 2009 R80
-
(2009)
Genome Biol
, vol.10
, pp. R80
-
-
Macarthur, S.1
Li, X.-Y.2
Li, J.3
Brown, J.4
Chu, H.C.5
Zeng, L.6
Grondona, B.7
Hechmer, A.8
Simirenko, L.9
Keranen, S.10
-
50
-
-
0041029474
-
Direct targeting of light signals to a promoter element-bound transcription factor
-
J.F. Martínez-García, E. Huq, P.H. Quail Direct targeting of light signals to a promoter element-bound transcription factor Science 288 2000 859 863
-
(2000)
Science
, vol.288
, pp. 859-863
-
-
Martínez-García, J.F.1
Huq, E.2
Quail, P.H.3
-
51
-
-
9244261581
-
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development
-
E. Monte, J.M. Tepperman, B. Al-Sady, K.A. Kaczorowski, J.M. Alonso, J.R. Ecker, X. Li, Y. Zhang, P.H. Quail The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development Proc. Natl Acad. Sci. U S A 101 2004 16091 16098
-
(2004)
Proc. Natl Acad. Sci. U S A
, vol.101
, pp. 16091-16098
-
-
Monte, E.1
Tepperman, J.M.2
Al-Sady, B.3
Kaczorowski, K.A.4
Alonso, J.M.5
Ecker, J.R.6
Li, X.7
Zhang, Y.8
Quail, P.H.9
-
52
-
-
48249094269
-
PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis
-
J. Moon, L. Zhu, H. Shen, E. Huq PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis Proc. Natl Acad. Sci. U S A 105 2008 9433 9438
-
(2008)
Proc. Natl Acad. Sci. U S A
, vol.105
, pp. 9433-9438
-
-
Moon, J.1
Zhu, L.2
Shen, H.3
Huq, E.4
-
53
-
-
6044233392
-
Light-regulated nuclear localization of phytochromes
-
A. Nagatani Light-regulated nuclear localization of phytochromes Curr. Opin. Plant Biol 7 2004 708 711
-
(2004)
Curr. Opin. Plant Biol
, vol.7
, pp. 708-711
-
-
Nagatani, A.1
-
54
-
-
34547677722
-
Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation
-
T. Nakagawa, T. Kurose, T. Hino, K. Tanaka, M. Kawamukai, Y. Niwa, K. Toyooka, K. Matsuoka, T. Jinbo, T. Kimura Development of series of gateway binary vectors, pGWBs, for realizing efficient construction of fusion genes for plant transformation Journal of Bioscience and Bioengineering 104 2007 34 41
-
(2007)
Journal of Bioscience and Bioengineering
, vol.104
, pp. 34-41
-
-
Nakagawa, T.1
Kurose, T.2
Hino, T.3
Tanaka, K.4
Kawamukai, M.5
Niwa, Y.6
Toyooka, K.7
Matsuoka, K.8
Jinbo, T.9
Kimura, T.10
-
55
-
-
84883175765
-
Multisite light-induced phosphorylation of the transcription factor PIF3 is necessary for both its rapid degradation and concomitant negative feedback modulation of photoreceptor phyB levels in Arabidopsis
-
W. Ni, S.L. Xu, R.J. Chalkley, T.N. Pham, S. Guan, D.A. Maltby, A.L. Burlingame, Z.Y. Wang, P.H. Quail Multisite light-induced phosphorylation of the transcription factor PIF3 is necessary for both its rapid degradation and concomitant negative feedback modulation of photoreceptor phyB levels in Arabidopsis Plant Cell 25 2013 2679 2698
-
(2013)
Plant Cell
, vol.25
, pp. 2679-2698
-
-
Ni, W.1
Xu, S.L.2
Chalkley, R.J.3
Pham, T.N.4
Guan, S.5
Maltby, D.A.6
Burlingame, A.L.7
Wang, Z.Y.8
Quail, P.H.9
-
56
-
-
65249184988
-
The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana
-
Y. Niwa, T. Yamashino, T. Mizuno The circadian clock regulates the photoperiodic response of hypocotyl elongation through a coincidence mechanism in Arabidopsis thaliana Plant Cell Physiol 50 2009 838 854
-
(2009)
Plant Cell Physiol
, vol.50
, pp. 838-854
-
-
Niwa, Y.1
Yamashino, T.2
Mizuno, T.3
-
57
-
-
34447520296
-
Rhythmic growth explained by coincidence between internal and external cues
-
K. Nozue, M.F. Covington, P.D. Duek, S. Lorrain, C. Fankhauser, S.L. Harmer, J.N. Maloof Rhythmic growth explained by coincidence between internal and external cues Nature 448 2007 358 361
-
(2007)
Nature
, vol.448
, pp. 358-361
-
-
Nozue, K.1
Covington, M.F.2
Duek, P.D.3
Lorrain, S.4
Fankhauser, C.5
Harmer, S.L.6
Maloof, J.N.7
-
58
-
-
64749089220
-
Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis
-
E. Oh, H. Kang, S. Yamaguchi, J. Park, D. Lee, Y. Kamiya, G. Choi Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis The Plant Cell Online 21 2009 403 419
-
(2009)
The Plant Cell Online
, vol.21
, pp. 403-419
-
-
Oh, E.1
Kang, H.2
Yamaguchi, S.3
Park, J.4
Lee, D.5
Kamiya, Y.6
Choi, G.7
-
59
-
-
33745096514
-
Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis
-
E. Oh, S. Yamaguchi, Y. Kamiya, G. Bae, W.I. Chung, G. Choi Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis Plant J 47 2006 124 139
-
(2006)
Plant J
, vol.47
, pp. 124-139
-
-
Oh, E.1
Yamaguchi, S.2
Kamiya, Y.3
Bae, G.4
Chung, W.I.5
Choi, G.6
-
60
-
-
84864876885
-
Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses
-
E. Oh, J.Y. Zhu, Z.Y. Wang Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses Nat. Cell Biol 14 2012 802 809
-
(2012)
Nat. Cell Biol
, vol.14
, pp. 802-809
-
-
Oh, E.1
Zhu, J.Y.2
Wang, Z.Y.3
-
61
-
-
76049125511
-
ChIP-seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells
-
Z. Ouyang, Q. Zhou, W.H. Wong ChIP-seq of transcription factors predicts absolute and differential gene expression in embryonic stem cells Proc. Natl Acad. Sci. U S A 106 2009 21521 21526
-
(2009)
Proc. Natl Acad. Sci. U S A
, vol.106
, pp. 21521-21526
-
-
Ouyang, Z.1
Zhou, Q.2
Wong, W.H.3
-
62
-
-
4644354063
-
Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling
-
E. Park, J. Kim, Y. Lee, J. Shin, E. Oh, W.-I. Chung, J.R. Liu, G. Choi Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling Plant Cell Physiol 45 2004 968 975
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 968-975
-
-
Park, E.1
Kim, J.2
Lee, Y.3
Shin, J.4
Oh, E.5
Chung, W.-I.6
Liu, J.R.7
Choi, G.8
-
63
-
-
84859618905
-
Interaction with plant transcription factors can mediate nuclear import of phytochrome B
-
A. Pfeiffer, M.-K. Nagel, C. Popp, F.F. Wüst, J.N. Bindics, A.s. Viczián, A. Hiltbrunner, F. Nagy, T. Kunkel, E. Schäfer Interaction with plant transcription factors can mediate nuclear import of phytochrome B Proc. Natl Acad. Sci. U S A 109 2012 5892 5897
-
(2012)
Proc. Natl Acad. Sci. U S A
, vol.109
, pp. 5892-5897
-
-
Pfeiffer, A.1
Nagel, M.-K.2
Popp, C.3
Wüst, F.F.4
Bindics, J.N.5
Viczián, A.S.6
Hiltbrunner, A.7
Nagy, F.8
Kunkel, T.9
Schäfer, E.10
-
64
-
-
0036484368
-
Phytochrome photosensory signalling networks
-
P.H. Quail Phytochrome photosensory signalling networks Nat. Rev. Mol. Cell Biol 3 2002 85 93
-
(2002)
Nat. Rev. Mol. Cell Biol
, vol.3
, pp. 85-93
-
-
Quail, P.H.1
-
65
-
-
36248933309
-
Phytochrome interacting factors
-
G.C. Whitelam K.J. Halliday Blackwell Publishing Oxford, UK
-
P.H. Quail Phytochrome interacting factors G.C. Whitelam K.J. Halliday Light and Plant Development 2007 Blackwell Publishing Oxford, UK 81 105
-
(2007)
Light and Plant Development
, pp. 81-105
-
-
Quail, P.H.1
-
66
-
-
75249087100
-
EdgeR: A bioconductor package for differential expression analysis of digital gene expression data
-
M.D. Robinson, D.J. McCarthy, G.K. Smyth edgeR: a bioconductor package for differential expression analysis of digital gene expression data Bioinformatics 26 2010 139 140
-
(2010)
Bioinformatics
, vol.26
, pp. 139-140
-
-
Robinson, M.D.1
McCarthy, D.J.2
Smyth, G.K.3
-
68
-
-
33745436506
-
Identification of primary target genes of phytochrome signaling: Early transcriptional control during shade avoidance responses in Arabidopsis
-
I. Roig-Villanova, J. Bou, C.l. Sorin, P.F. Devlin, J.F. Martínez-García Identification of primary target genes of phytochrome signaling: early transcriptional control during shade avoidance responses in Arabidopsis Plant Physiol 141 2006 85 96
-
(2006)
Plant Physiol
, vol.141
, pp. 85-96
-
-
Roig-Villanova, I.1
Bou, J.2
Sorin, C.L.3
Devlin, P.F.4
Martínez-García, J.F.5
-
70
-
-
84855222513
-
Functional profiling identifies genes involved in organ-specific branches of the PIF3 regulatory network in Arabidopsis
-
M. Sentandreu, G. Martin, N. González-Schain, P. Leivar, J. Soy, J.M. Tepperman, P.H. Quail, E. Monte Functional profiling identifies genes involved in organ-specific branches of the PIF3 regulatory network in Arabidopsis The Plant Cell Online 23 2011 3974 3991
-
(2011)
The Plant Cell Online
, vol.23
, pp. 3974-3991
-
-
Sentandreu, M.1
Martin, G.2
González-Schain, N.3
Leivar, P.4
Soy, J.5
Tepperman, J.M.6
Quail, P.H.7
Monte, E.8
-
71
-
-
33644878135
-
PIF1 is regulated by light-mediated degradation through the ubiquitin-26S proteasome pathway to optimize photomorphogenesis of seedlings in Arabidopsis
-
H. Shen, J. Moon, E. Huq PIF1 is regulated by light-mediated degradation through the ubiquitin-26S proteasome pathway to optimize photomorphogenesis of seedlings in Arabidopsis Plant J 44 2005 1023 1035
-
(2005)
Plant J
, vol.44
, pp. 1023-1035
-
-
Shen, H.1
Moon, J.2
Huq, E.3
-
72
-
-
57649111948
-
Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes
-
H. Shen, L. Zhu, A. Castillon, M. Majee, B. Downie, E. Huq Light-induced phosphorylation and degradation of the negative regulator PHYTOCHROME-INTERACTING FACTOR1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes Plant Cell 20 2008 1586 1602
-
(2008)
Plant Cell
, vol.20
, pp. 1586-1602
-
-
Shen, H.1
Zhu, L.2
Castillon, A.3
Majee, M.4
Downie, B.5
Huq, E.6
-
73
-
-
36248970183
-
Phytochrome induces rapid PIF5 phosphorylation and degradation in response to red-light activation
-
Y. Shen, R. Khanna, C.M. Carle, P.H. Quail Phytochrome induces rapid PIF5 phosphorylation and degradation in response to red-light activation Plant Physiol 145 2007 1043 1051
-
(2007)
Plant Physiol
, vol.145
, pp. 1043-1051
-
-
Shen, Y.1
Khanna, R.2
Carle, C.M.3
Quail, P.H.4
-
74
-
-
66149118628
-
Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors
-
J. Shin, K. Kima, H. Kang, I.S. Zulfugarovc, G. Baea, C-. H. Leec, D. Leeb, C. Choi Phytochromes promote seedling light responses by inhibiting four negatively-acting phytochrome-interacting factors PNAS 106 2009 7660 7665
-
(2009)
PNAS
, vol.106
, pp. 7660-7665
-
-
Shin, J.1
Kima, K.2
Kang, H.3
Zulfugarovc, I.S.4
Baea, G.5
Leec -. C, H.6
Leeb, D.7
Choi, C.8
-
75
-
-
84864439477
-
Phytochrome-imposed oscillations in PIF3 protein abundance regulate hypocotyl growth under diurnal light/dark conditions in Arabidopsis
-
J. Soy, P. Leivar, N. González-Schain, M. Sentandreu, S. Prat, P.H. Quail, E. Monte Phytochrome-imposed oscillations in PIF3 protein abundance regulate hypocotyl growth under diurnal light/dark conditions in Arabidopsis Plant J 71 2012 390 401
-
(2012)
Plant J
, vol.71
, pp. 390-401
-
-
Soy, J.1
Leivar, P.2
González-Schain, N.3
Sentandreu, M.4
Prat, S.5
Quail, P.H.6
Monte, E.7
-
76
-
-
79956367505
-
PIF genes mediate the effect of sucrose on seedling growth dynamics
-
J.L. Stewart, J.N. Maloof, J.L. Nemhauser PIF genes mediate the effect of sucrose on seedling growth dynamics PLoS ONE 6 2011 e19894
-
(2011)
PLoS ONE
, vol.6
, pp. e19894
-
-
Stewart, J.L.1
Maloof, J.N.2
Nemhauser, J.L.3
-
77
-
-
78149472965
-
Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis
-
Y. Sun, X.-Y. Fan, D.-M. Cao, W. Tang, K. He, J.-Y. Zhu, J.-X. He, M.-Y. Bai, S. Zhu, E. Oh et al. Integration of brassinosteroid signal transduction with the transcription network for plant growth regulation in Arabidopsis Dev. Cell 19 2010 765 777
-
(2010)
Dev. Cell
, vol.19
, pp. 765-777
-
-
Sun, Y.1
Fan, X.-Y.2
Cao, D.-M.3
Tang, W.4
He, K.5
Zhu, J.-Y.6
He, J.-X.7
Bai, M.-Y.8
Zhu, S.9
Oh, E.10
-
78
-
-
84862812393
-
Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis
-
Z. Tao, L. Shen, C. Liu, L. Liu, Y. Yan, H. Yu Genome-wide identification of SOC1 and SVP targets during the floral transition in Arabidopsis Plant J 70 2012 549 561
-
(2012)
Plant J
, vol.70
, pp. 549-561
-
-
Tao, Z.1
Shen, L.2
Liu, C.3
Liu, L.4
Yan, Y.5
Yu, H.6
-
79
-
-
0042421751
-
The Arabidopsis basic helix-loop-helix transcription factor family
-
G. Toledo-Ortiz, E. Huq, P.H. Quail The Arabidopsis basic helix-loop-helix transcription factor family Plant Cell 15 2003 1749 1770
-
(2003)
Plant Cell
, vol.15
, pp. 1749-1770
-
-
Toledo-Ortiz, G.1
Huq, E.2
Quail, P.H.3
-
80
-
-
0038000470
-
Dissecting the phytochrome A-dependent signaling network in higher plants
-
H. Wang, X.W. Deng Dissecting the phytochrome A-dependent signaling network in higher plants Trends Plant Sci 8 2003 172 178
-
(2003)
Trends Plant Sci
, vol.8
, pp. 172-178
-
-
Wang, H.1
Deng, X.W.2
-
81
-
-
0034802618
-
Use of chromatin immunoprecipitation to clone novel E2F target promoters
-
A.S. Weinmann, S.M. Bartley, T. Zhang, M.Q. Zhang, P.J. Farnham Use of chromatin immunoprecipitation to clone novel E2F target promoters Mol. Cell Biol 21 2001 6820 6832
-
(2001)
Mol. Cell Biol
, vol.21
, pp. 6820-6832
-
-
Weinmann, A.S.1
Bartley, S.M.2
Zhang, T.3
Zhang, M.Q.4
Farnham, P.J.5
-
82
-
-
84878282421
-
Epigenomic analysis of multilineage differentiation of human embryonic stem cells
-
W. Xie, M.D. Schultz, R. Lister, Z. Hou, N. Rajagopal, P. Ray, J.W. Whitaker, S. Tian, R.D. Hawkins, D. Leung et al. Epigenomic analysis of multilineage differentiation of human embryonic stem cells Cell 153 2013 1134 1148
-
(2013)
Cell
, vol.153
, pp. 1134-1148
-
-
Xie, W.1
Schultz, M.D.2
Lister, R.3
Hou, Z.4
Rajagopal, N.5
Ray, P.6
Whitaker, J.W.7
Tian, S.8
Hawkins, R.D.9
Leung, D.10
-
83
-
-
35949000033
-
A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
-
X. Xu, M. Bieda, V.X. Jin, A. Rabinovich, M.J. Oberley, R. Green, P.J. Farnham A comprehensive ChIP-chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members Genome Res 17 2007 1550 1561
-
(2007)
Genome Res
, vol.17
, pp. 1550-1561
-
-
Xu, X.1
Bieda, M.2
Jin, V.X.3
Rabinovich, A.4
Oberley, M.J.5
Green, R.6
Farnham, P.J.7
-
84
-
-
79551652213
-
A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana
-
X. Yu, L. Li, J. Zola, M. Aluru, H. Ye, A. Foudree, H. Guo, S. Anderson, S. Aluru, P. Liu et al. A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana Plant J 65 2011 634 646
-
(2011)
Plant J
, vol.65
, pp. 634-646
-
-
Yu, X.1
Li, L.2
Zola, J.3
Aluru, M.4
Ye, H.5
Foudree, A.6
Guo, H.7
Anderson, S.8
Aluru, S.9
Liu, P.10
-
85
-
-
79251572672
-
Genome-wide mapping of the HY5-mediated genenetworks in Arabidopsis that involve both transcriptional and post-transcriptional regulation
-
H. Zhang, H. He, X. Wang, X. Wang, X. Yang, L. Li, X.W. Deng Genome-wide mapping of the HY5-mediated genenetworks in Arabidopsis that involve both transcriptional and post-transcriptional regulation Plant J 65 2011 346 358
-
(2011)
Plant J
, vol.65
, pp. 346-358
-
-
Zhang, H.1
He, H.2
Wang, X.3
Wang, X.4
Yang, X.5
Li, L.6
Deng, X.W.7
-
86
-
-
33845435000
-
Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method
-
X. Zhang, R. Henriques, S.-S. Lin, Q.-W. Niu, N.-H. Chua Agrobacterium-mediated transformation of Arabidopsis thaliana using the floral dip method Nature Protocols 1 2006 641 646
-
(2006)
Nature Protocols
, vol.1
, pp. 641-646
-
-
Zhang, X.1
Henriques, R.2
Lin, S.-S.3
Niu, Q.-W.4
Chua, N.-H.5
-
87
-
-
53849146020
-
Model-based analysis of ChIP-seq (MACS)
-
Y. Zhang, T. Liu, C.A. Meyer, J. Eeckhoute, D.S. Johnson, B.E. Bernstein, C. Nusbaum, R.M. Myers, M. Brown, W. Li et al. Model-based analysis of ChIP-seq (MACS) Genome Biol 9 2008 R137
-
(2008)
Genome Biol
, vol.9
, pp. R137
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
-
88
-
-
84873497636
-
A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis
-
Y. Zhang, O. Mayba, A. Pfeiffer, H. Shi, J.M. Tepperman, T.P. Speed, P.H. Quail A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression-patterning of shared target genes in Arabidopsis PLoS Genet 9 2013 e1003244
-
(2013)
PLoS Genet
, vol.9
, pp. e1003244
-
-
Zhang, Y.1
Mayba, O.2
Pfeiffer, A.3
Shi, H.4
Tepperman, J.M.5
Speed, T.P.6
Quail, P.H.7
-
89
-
-
84865259903
-
A molecular framework of light-controlled phytohormone action in Arabidopsis
-
S. Zhong, H. Shi, C. Xue, L. Wang, Y. Xi, J. Li, P.H. Quail, X.W. Deng, H. Guo A molecular framework of light-controlled phytohormone action in Arabidopsis Curr. Biol 22 2012 1530 1535
-
(2012)
Curr. Biol
, vol.22
, pp. 1530-1535
-
-
Zhong, S.1
Shi, H.2
Xue, C.3
Wang, L.4
Xi, Y.5
Li, J.6
Quail, P.H.7
Deng, X.W.8
Guo, H.9
-
90
-
-
79959359483
-
Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor
-
X. Zhou, E.K. O'Shea Integrated approaches reveal determinants of genome-wide binding and function of the transcription factor Pho4. Mol. Cell 42 2011 826 836
-
(2011)
Pho4. Mol. Cell
, vol.42
, pp. 826-836
-
-
Zhou, X.1
O'Shea, E.K.2
|