-
1
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis Genome Initiative
-
Arabidopsis Genome Initiative Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815.
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
2
-
-
84907150192
-
The map-based sequence of the rice genome
-
International Rice Genome Sequencing Project
-
International Rice Genome Sequencing Project The map-based sequence of the rice genome. Nature 2005, 436:793-800.
-
(2005)
Nature
, vol.436
, pp. 793-800
-
-
-
3
-
-
20144366003
-
The genomes of Oryza sativa: a history of duplications
-
Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., et al. The genomes of Oryza sativa: a history of duplications. PLoS Biol 2005, 3:e38.
-
(2005)
PLoS Biol
, vol.3
-
-
Yu, J.1
Wang, J.2
Lin, W.3
Li, S.4
Li, H.5
Zhou, J.6
Ni, P.7
Dong, W.8
Hu, S.9
Zeng, C.10
-
4
-
-
33748760611
-
The genome of black cottonwood Populus trichocarpa (Torr. & Gray)
-
Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., et al. The genome of black cottonwood Populus trichocarpa (Torr. & Gray). Science 2006, 313:1596-1604.
-
(2006)
Science
, vol.313
, pp. 1596-1604
-
-
Tuskan, G.A.1
Difazio, S.2
Jansson, S.3
Bohlmann, J.4
Grigoriev, I.5
Hellsten, U.6
Putnam, N.7
Ralph, S.8
Rombauts, S.9
Salamov, A.10
-
5
-
-
34848886909
-
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
-
Jaillon O., Aury J.M., Noel B., Policriti A., Clepet C., Casagrande A., Choisne N., Aubourg S., Vitulo N., Jubin C., et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature 2007, 449:463-467.
-
(2007)
Nature
, vol.449
, pp. 463-467
-
-
Jaillon, O.1
Aury, J.M.2
Noel, B.3
Policriti, A.4
Clepet, C.5
Casagrande, A.6
Choisne, N.7
Aubourg, S.8
Vitulo, N.9
Jubin, C.10
-
6
-
-
41249098849
-
A high quality draft consensus sequence of the genome of a heterozygous grapevine variety
-
Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D., Pindo M., Fitzgerald L.M., Vezzulli S., Reid J., et al. A high quality draft consensus sequence of the genome of a heterozygous grapevine variety. PLoS One 2007, 2:e1326.
-
(2007)
PLoS One
, vol.2
-
-
Velasco, R.1
Zharkikh, A.2
Troggio, M.3
Cartwright, D.A.4
Cestaro, A.5
Pruss, D.6
Pindo, M.7
Fitzgerald, L.M.8
Vezzulli, S.9
Reid, J.10
-
7
-
-
42949157236
-
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
-
Ming R., Hou S., Feng Y., Yu Q., Dionne-Laporte A., Saw J.H., Senin P., Wang W., Ly B.V., Lewis K.L., et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature 2008, 452:991-996.
-
(2008)
Nature
, vol.452
, pp. 991-996
-
-
Ming, R.1
Hou, S.2
Feng, Y.3
Yu, Q.4
Dionne-Laporte, A.5
Saw, J.H.6
Senin, P.7
Wang, W.8
Ly, B.V.9
Lewis, K.L.10
-
8
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., Liang C., Zhang J., Fulton L., Graves T.A., et al. The B73 maize genome: complexity, diversity, and dynamics. Science 2009, 326:1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
-
9
-
-
58449137410
-
The Sorghum bicolor genome and the diversification of grasses
-
Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J., Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., et al. The Sorghum bicolor genome and the diversification of grasses. Nature 2009, 457:551-556.
-
(2009)
Nature
, vol.457
, pp. 551-556
-
-
Paterson, A.H.1
Bowers, J.E.2
Bruggmann, R.3
Dubchak, I.4
Grimwood, J.5
Gundlach, H.6
Haberer, G.7
Hellsten, U.8
Mitros, T.9
Poliakov, A.10
-
10
-
-
70649085835
-
The genome of the cucumber Cucumis sativus L.
-
Huang S., Li R., Zhang Z., Li L., Gu X., Fan W., Lucas W.J., Wang X., Xie B., Ni P., et al. The genome of the cucumber Cucumis sativus L. Nat Genet 2009, 41:1275-1281.
-
(2009)
Nat Genet
, vol.41
, pp. 1275-1281
-
-
Huang, S.1
Li, R.2
Zhang, Z.3
Li, L.4
Gu, X.5
Fan, W.6
Lucas, W.J.7
Wang, X.8
Xie, B.9
Ni, P.10
-
11
-
-
74549221016
-
Genome sequence of the palaeopolyploid soybean
-
Schmutz J., Cannon S.B., Schlueter J., Ma J., Mitros T., Nelson W., Hyten D.L., Song Q., Thelen J.J., Cheng J., et al. Genome sequence of the palaeopolyploid soybean. Nature 2010, 463:178-183.
-
(2010)
Nature
, vol.463
, pp. 178-183
-
-
Schmutz, J.1
Cannon, S.B.2
Schlueter, J.3
Ma, J.4
Mitros, T.5
Nelson, W.6
Hyten, D.L.7
Song, Q.8
Thelen, J.J.9
Cheng, J.10
-
12
-
-
76749150030
-
Genome sequencing and analysis of the model grass Brachypodium distachyon
-
Vogel J.P., Garvin D.F., Mockler T.C., Schmutz J., Rokhsar D., Bevan M.W., Barry K., Lucas S., Harmon-Smith M., Lail K., et al. Genome sequencing and analysis of the model grass Brachypodium distachyon. Nature 2010, 463:763-768.
-
(2010)
Nature
, vol.463
, pp. 763-768
-
-
Vogel, J.P.1
Garvin, D.F.2
Mockler, T.C.3
Schmutz, J.4
Rokhsar, D.5
Bevan, M.W.6
Barry, K.7
Lucas, S.8
Harmon-Smith, M.9
Lail, K.10
-
13
-
-
77956656511
-
Draft genome sequence of the oilseed species Ricinus communis
-
Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D., Melake-Berhan A., Jones K.M., Redman J., Chen G., et al. Draft genome sequence of the oilseed species Ricinus communis. Nat Biotechnol 2010, 28:951-956.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 951-956
-
-
Chan, A.P.1
Crabtree, J.2
Zhao, Q.3
Lorenzi, H.4
Orvis, J.5
Puiu, D.6
Melake-Berhan, A.7
Jones, K.M.8
Redman, J.9
Chen, G.10
-
14
-
-
77957560949
-
The genome of the domesticated apple (Malus×domestica Borkh.)
-
Velasco R., Zharkikh A., Affourtit J., Dhingra A., Cestaro A., Kalyanaraman A., Fontana P., Bhatnagar S.K., Troggio M., Pruss D., et al. The genome of the domesticated apple (Malus×domestica Borkh.). Nat Genet 2010, 42:833-839.
-
(2010)
Nat Genet
, vol.42
, pp. 833-839
-
-
Velasco, R.1
Zharkikh, A.2
Affourtit, J.3
Dhingra, A.4
Cestaro, A.5
Kalyanaraman, A.6
Fontana, P.7
Bhatnagar, S.K.8
Troggio, M.9
Pruss, D.10
-
15
-
-
49449094955
-
Regulating the regulators: the future prospects for transcription-factor-based agricultural biotechnology products
-
Century K., Reuber T.L., Ratcliffe O.J. Regulating the regulators: the future prospects for transcription-factor-based agricultural biotechnology products. Plant Physiol 2008, 147:20-29.
-
(2008)
Plant Physiol
, vol.147
, pp. 20-29
-
-
Century, K.1
Reuber, T.L.2
Ratcliffe, O.J.3
-
16
-
-
42249096763
-
Transcription factors for predictive plant metabolic engineering: are we there yet?
-
Grotewold E. Transcription factors for predictive plant metabolic engineering: are we there yet?. Curr Opin Biotechnol 2008, 19:138-144.
-
(2008)
Curr Opin Biotechnol
, vol.19
, pp. 138-144
-
-
Grotewold, E.1
-
17
-
-
34848812619
-
Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene
-
Karaba A., Dixit S., Greco R., Aharoni A., Trijatmiko K.R., Marsch-Martinez N., Krishnan A., Nataraja K.N., Udayakumar M., Pereira A. Improvement of water use efficiency in rice by expression of HARDY, an Arabidopsis drought and salt tolerance gene. Proc Natl Acad Sci USA 2007, 104:15270-15275.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 15270-15275
-
-
Karaba, A.1
Dixit, S.2
Greco, R.3
Aharoni, A.4
Trijatmiko, K.R.5
Marsch-Martinez, N.6
Krishnan, A.7
Nataraja, K.N.8
Udayakumar, M.9
Pereira, A.10
-
18
-
-
36749006127
-
Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres
-
Nelson D.E., Repetti P.P., Adams T.R., Creelman R.A., Wu J., Warner D.C., Anstrom D.C., Bensen R.J., Castiglioni P.P., Donnarummo M.G., et al. Plant nuclear factor Y (NF-Y) B subunits confer drought tolerance and lead to improved corn yields on water-limited acres. Proc Natl Acad Sci USA 2007, 104:16450-16455.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 16450-16455
-
-
Nelson, D.E.1
Repetti, P.P.2
Adams, T.R.3
Creelman, R.A.4
Wu, J.5
Warner, D.C.6
Anstrom, D.C.7
Bensen, R.J.8
Castiglioni, P.P.9
Donnarummo, M.G.10
-
19
-
-
77954257814
-
Expression of ZmLEC1 and ZmWRI1 increases seed oil production in maize
-
Shen B., Allen W.B., Zheng P., Li C., Glassman K., Ranch J., Nubel D., Tarczynski M.C. Expression of ZmLEC1 and ZmWRI1 increases seed oil production in maize. Plant Physiol 2010, 153:980-987.
-
(2010)
Plant Physiol
, vol.153
, pp. 980-987
-
-
Shen, B.1
Allen, W.B.2
Zheng, P.3
Li, C.4
Glassman, K.5
Ranch, J.6
Nubel, D.7
Tarczynski, M.C.8
-
20
-
-
34249800908
-
WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis
-
Baud S., Mendoza M.S., To A., Harscoet E., Lepiniec L., Dubreucq B. WRINKLED1 specifies the regulatory action of LEAFY COTYLEDON2 towards fatty acid metabolism during seed maturation in Arabidopsis. Plant J 2007, 50:825-838.
-
(2007)
Plant J
, vol.50
, pp. 825-838
-
-
Baud, S.1
Mendoza, M.S.2
To, A.3
Harscoet, E.4
Lepiniec, L.5
Dubreucq, B.6
-
21
-
-
70350505797
-
An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis
-
Maeo K., Tokuda T., Ayame A., Mitsui N., Kawai T., Tsukagoshi H., Ishiguro S., Nakamura K. An AP2-type transcription factor, WRINKLED1, of Arabidopsis thaliana binds to the AW-box sequence conserved among proximal upstream regions of genes involved in fatty acid synthesis. Plant J 2009, 60:476-487.
-
(2009)
Plant J
, vol.60
, pp. 476-487
-
-
Maeo, K.1
Tokuda, T.2
Ayame, A.3
Mitsui, N.4
Kawai, T.5
Tsukagoshi, H.6
Ishiguro, S.7
Nakamura, K.8
-
22
-
-
57749092752
-
LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis
-
Mu J., Tan H., Zheng Q., Fu F., Liang Y., Zhang J., Yang X., Wang T., Chong K., Wang X.J., et al. LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis. Plant Physiol 2008, 148:1042-1054.
-
(2008)
Plant Physiol
, vol.148
, pp. 1042-1054
-
-
Mu, J.1
Tan, H.2
Zheng, Q.3
Fu, F.4
Liang, Y.5
Zhang, J.6
Yang, X.7
Wang, T.8
Chong, K.9
Wang, X.J.10
-
23
-
-
43549090392
-
Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis
-
Santos-Mendoza M., Dubreucq B., Baud S., Parcy F., Caboche M., Lepiniec L. Deciphering gene regulatory networks that control seed development and maturation in Arabidopsis. Plant J 2008, 54:608-620.
-
(2008)
Plant J
, vol.54
, pp. 608-620
-
-
Santos-Mendoza, M.1
Dubreucq, B.2
Baud, S.3
Parcy, F.4
Caboche, M.5
Lepiniec, L.6
-
24
-
-
77950666930
-
Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance
-
Lacombe S., Rougon-Cardoso A., Sherwood E., Peeters N., Dahlbeck D., van Esse H.P., Smoker M., Rallapalli G., Thomma B.P., Staskawicz B. Interfamily transfer of a plant pattern-recognition receptor confers broad-spectrum bacterial resistance. Nat Biotechnol 2010, 28:365-369.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 365-369
-
-
Lacombe, S.1
Rougon-Cardoso, A.2
Sherwood, E.3
Peeters, N.4
Dahlbeck, D.5
van Esse, H.P.6
Smoker, M.7
Rallapalli, G.8
Thomma, B.P.9
Staskawicz, B.10
-
25
-
-
66249135697
-
A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors
-
Boller T., Felix G. A renaissance of elicitors: perception of microbe-associated molecular patterns and danger signals by pattern-recognition receptors. Annu Rev Plant Biol 2009, 60:379-406.
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 379-406
-
-
Boller, T.1
Felix, G.2
-
26
-
-
33646525169
-
Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation
-
Zipfel C., Kunze G., Chinchilla D., Caniard A., Jones J.D., Boller T., Felix G. Perception of the bacterial PAMP EF-Tu by the receptor EFR restricts Agrobacterium-mediated transformation. Cell 2006, 125:749-760.
-
(2006)
Cell
, vol.125
, pp. 749-760
-
-
Zipfel, C.1
Kunze, G.2
Chinchilla, D.3
Caniard, A.4
Jones, J.D.5
Boller, T.6
Felix, G.7
-
27
-
-
77956463857
-
Genetic perspectives on crop domestication
-
Gross B.L., Olsen K.M. Genetic perspectives on crop domestication. Trends Plant Sci 2010, 15:529-537.
-
(2010)
Trends Plant Sci
, vol.15
, pp. 529-537
-
-
Gross, B.L.1
Olsen, K.M.2
-
28
-
-
77951903570
-
SnapShot: control of flowering in Arabidopsis
-
550, 550 e551-552
-
Fornara F., de Montaigu A., Coupland G. SnapShot: control of flowering in Arabidopsis. Cell 2010, 141. 550, 550 e551-552.
-
(2010)
Cell
, vol.141
-
-
Fornara, F.1
de Montaigu, A.2
Coupland, G.3
-
29
-
-
77956334725
-
Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses
-
Higgins J.A., Bailey P.C., Laurie D.A. Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses. PLoS One 2010, 5:e10065.
-
(2010)
PLoS One
, vol.5
-
-
Higgins, J.A.1
Bailey, P.C.2
Laurie, D.A.3
-
30
-
-
78549274321
-
Gene networks controlling the initiation of flower development
-
Wellmer F., Riechmann J.L. Gene networks controlling the initiation of flower development. Trends Genet 2010, 26:519-527.
-
(2010)
Trends Genet
, vol.26
, pp. 519-527
-
-
Wellmer, F.1
Riechmann, J.L.2
-
31
-
-
75849120418
-
From ABC genes to regulatory networks, epigenetic landscapes and flower morphogenesis: making biological sense of theoretical approaches
-
Alvarez-Buylla E.R., Azpeitia E., Barrio R., Benitez M., Padilla-Longoria P. From ABC genes to regulatory networks, epigenetic landscapes and flower morphogenesis: making biological sense of theoretical approaches. Semin Cell Dev Biol 2010, 21:108-117.
-
(2010)
Semin Cell Dev Biol
, vol.21
, pp. 108-117
-
-
Alvarez-Buylla, E.R.1
Azpeitia, E.2
Barrio, R.3
Benitez, M.4
Padilla-Longoria, P.5
-
32
-
-
77952640771
-
The Arabidopsis thaliana flower organ specification gene regulatory network determines a robust differentiation process
-
Sanchez-Corrales Y.E., Alvarez-Buylla E.R., Mendoza L. The Arabidopsis thaliana flower organ specification gene regulatory network determines a robust differentiation process. J Theor Biol 2010, 264:971-983.
-
(2010)
J Theor Biol
, vol.264
, pp. 971-983
-
-
Sanchez-Corrales, Y.E.1
Alvarez-Buylla, E.R.2
Mendoza, L.3
-
33
-
-
78149454107
-
Flower development as an interplay between dynamical physical fields and genetic networks
-
Barrio R.A., Hernandez-Machado A., Varea C., Romero-Arias J.R., Alvarez-Buylla E. Flower development as an interplay between dynamical physical fields and genetic networks. PLoS One 2010, 5:e13523.
-
(2010)
PLoS One
, vol.5
-
-
Barrio, R.A.1
Hernandez-Machado, A.2
Varea, C.3
Romero-Arias, J.R.4
Alvarez-Buylla, E.5
-
34
-
-
29544448913
-
Extension of a genetic network model by iterative experimentation and mathematical analysis
-
4100018
-
Locke J.C.W., Southern M.M., Kozma-Bognar L., Hibberd V., Brown P.E., Turner M.S., Millar A.A. Extension of a genetic network model by iterative experimentation and mathematical analysis. Mol Syst Biol 2005, 4100018:E1-E9.
-
(2005)
Mol Syst Biol
-
-
Locke, J.C.W.1
Southern, M.M.2
Kozma-Bognar, L.3
Hibberd, V.4
Brown, P.E.5
Turner, M.S.6
Millar, A.A.7
-
35
-
-
71449120958
-
Prediction of photoperiodic regulators from quantitative gene circuit models
-
Salazar J.D., Saithong T., Brown P.E., Foreman J., Locke J.C., Halliday K.J., Carre I.A., Rand D.A., Millar A.J. Prediction of photoperiodic regulators from quantitative gene circuit models. Cell 2009, 139:1170-1179.
-
(2009)
Cell
, vol.139
, pp. 1170-1179
-
-
Salazar, J.D.1
Saithong, T.2
Brown, P.E.3
Foreman, J.4
Locke, J.C.5
Halliday, K.J.6
Carre, I.A.7
Rand, D.A.8
Millar, A.J.9
-
36
-
-
77953808473
-
Next-generation genomics: an integrative approach
-
Hawkins R.D., Hon G.C., Ren B. Next-generation genomics: an integrative approach. Nat Rev Genet 2010, 11:476-486.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 476-486
-
-
Hawkins, R.D.1
Hon, G.C.2
Ren, B.3
-
37
-
-
76349125292
-
Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana
-
Lee I., Ambaru B., Thakkar P., Marcotte E.M., Rhee S.Y. Rational association of genes with traits using a genome-scale gene network for Arabidopsis thaliana. Nat Biotechnol 2010, 28:149-156.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 149-156
-
-
Lee, I.1
Ambaru, B.2
Thakkar, P.3
Marcotte, E.M.4
Rhee, S.Y.5
-
38
-
-
77956679288
-
Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network
-
Atias O., Chor B., Chamovitz D.A. Large-scale analysis of Arabidopsis transcription reveals a basal co-regulation network. BMC Syst Biol 2009, 3:86.
-
(2009)
BMC Syst Biol
, vol.3
, pp. 86
-
-
Atias, O.1
Chor, B.2
Chamovitz, D.A.3
-
39
-
-
71749094192
-
Arabidopsis gene co-expression network and its functional modules
-
Mao L., Van Hemert J.L., Dash S., Dickerson J.A. Arabidopsis gene co-expression network and its functional modules. BMC Bioinformatics 2009, 10:346.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 346
-
-
Mao, L.1
Van Hemert, J.L.2
Dash, S.3
Dickerson, J.A.4
-
40
-
-
73249138596
-
Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm
-
Mutwil M., Usadel B., Schutte M., Loraine A., Ebenhoh O., Persson S. Assembly of an interactive correlation network for the Arabidopsis genome using a novel heuristic clustering algorithm. Plant Physiol 2010, 152:29-43.
-
(2010)
Plant Physiol
, vol.152
, pp. 29-43
-
-
Mutwil, M.1
Usadel, B.2
Schutte, M.3
Loraine, A.4
Ebenhoh, O.5
Persson, S.6
-
41
-
-
70449481615
-
From gene expression to gene regulatory networks in Arabidopsis thaliana
-
Needham C.J., Manfield I.W., Bulpitt A.J., Gilmartin P.M., Westhead D.R. From gene expression to gene regulatory networks in Arabidopsis thaliana. BMC Syst Biol 2009, 3:85.
-
(2009)
BMC Syst Biol
, vol.3
, pp. 85
-
-
Needham, C.J.1
Manfield, I.W.2
Bulpitt, A.J.3
Gilmartin, P.M.4
Westhead, D.R.5
-
42
-
-
66649122827
-
Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks
-
Vandepoele K., Quimbaya M., Casneuf T., De Veylder L., Van de Peer Y. Unraveling transcriptional control in Arabidopsis using cis-regulatory elements and coexpression networks. Plant Physiol 2009, 150:535-546.
-
(2009)
Plant Physiol
, vol.150
, pp. 535-546
-
-
Vandepoele, K.1
Quimbaya, M.2
Casneuf, T.3
De Veylder, L.4
Van de Peer, Y.5
-
43
-
-
77956674928
-
The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks
-
Ficklin S.P., Luo F., Feltus F.A. The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks. Plant Physiol 2010, 154:13-24.
-
(2010)
Plant Physiol
, vol.154
, pp. 13-24
-
-
Ficklin, S.P.1
Luo, F.2
Feltus, F.A.3
-
44
-
-
70349215646
-
RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice
-
Lee T.H., Kim Y.K., Pham T.T., Song S.I., Kim J.K., Kang K.Y., An G., Jung K.H., Galbraith D.W., Kim M., et al. RiceArrayNet: a database for correlating gene expression from transcriptome profiling, and its application to the analysis of coexpressed genes in rice. Plant Physiol 2009, 151:16-33.
-
(2009)
Plant Physiol
, vol.151
, pp. 16-33
-
-
Lee, T.H.1
Kim, Y.K.2
Pham, T.T.3
Song, S.I.4
Kim, J.K.5
Kang, K.Y.6
An, G.7
Jung, K.H.8
Galbraith, D.W.9
Kim, M.10
-
45
-
-
66149174897
-
Web-queryable large-scale data sets for hypothesis generation in plant biology
-
Brady S.M., Provart N.J. Web-queryable large-scale data sets for hypothesis generation in plant biology. Plant Cell 2009, 21:1034-1051.
-
(2009)
Plant Cell
, vol.21
, pp. 1034-1051
-
-
Brady, S.M.1
Provart, N.J.2
-
46
-
-
70449115789
-
Co-expression tools for plant biology: opportunities for hypothesis generation and caveats
-
Usadel B., Obayashi T., Mutwil M., Giorgi F.M., Bassel G.W., Tanimoto M., Chow A., Steinhauser D., Persson S., Provart N.J. Co-expression tools for plant biology: opportunities for hypothesis generation and caveats. Plant Cell Environ 2009, 32:1633-1651.
-
(2009)
Plant Cell Environ
, vol.32
, pp. 1633-1651
-
-
Usadel, B.1
Obayashi, T.2
Mutwil, M.3
Giorgi, F.M.4
Bassel, G.W.5
Tanimoto, M.6
Chow, A.7
Steinhauser, D.8
Persson, S.9
Provart, N.J.10
-
47
-
-
77957724477
-
Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator
-
Fu F.F., Xue H.W. Coexpression Analysis Identifies Rice Starch Regulator1, a Rice AP2/EREBP Family Transcription Factor, as a Novel Rice Starch Biosynthesis Regulator. Plant Physiol 2010, 154:927-938.
-
(2010)
Plant Physiol
, vol.154
, pp. 927-938
-
-
Fu, F.F.1
Xue, H.W.2
-
48
-
-
78049415019
-
Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis
-
Jimenez-Gomez J.M., Wallace A.D., Maloof J.N. Network analysis identifies ELF3 as a QTL for the shade avoidance response in Arabidopsis. PLoS Genet 2010, 6:e1001100.
-
(2010)
PLoS Genet
, vol.6
-
-
Jimenez-Gomez, J.M.1
Wallace, A.D.2
Maloof, J.N.3
-
49
-
-
65949090511
-
Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower
-
Kaufmann K., Muino J.M., Jauregui R., Airoldi C.A., Smaczniak C., Krajewski P., Angenent G.C. Target genes of the MADS transcription factor SEPALLATA3: integration of developmental and hormonal pathways in the Arabidopsis flower. PLoS Biol 2009, 7:e1000090.
-
(2009)
PLoS Biol
, vol.7
-
-
Kaufmann, K.1
Muino, J.M.2
Jauregui, R.3
Airoldi, C.A.4
Smaczniak, C.5
Krajewski, P.6
Angenent, G.C.7
-
50
-
-
77950500412
-
Orchestration of floral initiation by APETALA1
-
Kaufmann K., Wellmer F., Muino J.M., Ferrier T., Wuest S.E., Kumar V., Serrano-Mislata A., Madueno F., Krajewski P., Meyerowitz E.M., et al. Orchestration of floral initiation by APETALA1. Science 2010, 328:85-89.
-
(2010)
Science
, vol.328
, pp. 85-89
-
-
Kaufmann, K.1
Wellmer, F.2
Muino, J.M.3
Ferrier, T.4
Wuest, S.E.5
Kumar, V.6
Serrano-Mislata, A.7
Madueno, F.8
Krajewski, P.9
Meyerowitz, E.M.10
-
51
-
-
68049146038
-
Repression of flowering by the miR172 target SMZ
-
Mathieu J., Yant L.J., Murdter F., Kuttner F., Schmid M. Repression of flowering by the miR172 target SMZ. PLoS Biol 2009, 7:e1000148.
-
(2009)
PLoS Biol
, vol.7
-
-
Mathieu, J.1
Yant, L.J.2
Murdter, F.3
Kuttner, F.4
Schmid, M.5
-
52
-
-
84979819147
-
Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2
-
Yant L., Mathieu J., Dinh T.T., Ott F., Lanz C., Wollmann H., Chen X., Schmid M. Orchestration of the floral transition and floral development in Arabidopsis by the bifunctional transcription factor APETALA2. Plant Cell 2010, 22:2156-2170.
-
(2010)
Plant Cell
, vol.22
, pp. 2156-2170
-
-
Yant, L.1
Mathieu, J.2
Dinh, T.T.3
Ott, F.4
Lanz, C.5
Wollmann, H.6
Chen, X.7
Schmid, M.8
-
53
-
-
77952913155
-
Transcriptional control of a plant stem cell niche
-
Busch W., Miotk A., Ariel F.D., Zhao Z., Forner J., Daum G., Suzaki T., Schuster C., Schultheiss S.J., Leibfried A., et al. Transcriptional control of a plant stem cell niche. Dev Cell 2010, 18:849-861.
-
(2010)
Dev Cell
, vol.18
, pp. 849-861
-
-
Busch, W.1
Miotk, A.2
Ariel, F.D.3
Zhao, Z.4
Forner, J.5
Daum, G.6
Suzaki, T.7
Schuster, C.8
Schultheiss, S.J.9
Leibfried, A.10
-
54
-
-
61449136893
-
A systems approach reveals regulatory circuitry for Arabidopsis trichome initiation by the GL3 and GL1 selectors
-
Morohashi K., Grotewold E. A systems approach reveals regulatory circuitry for Arabidopsis trichome initiation by the GL3 and GL1 selectors. PLoS Genet 2009, 5:e1000396.
-
(2009)
PLoS Genet
, vol.5
-
-
Morohashi, K.1
Grotewold, E.2
-
55
-
-
77954227869
-
Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth
-
Sozzani R., Cui H., Moreno-Risueno M.A., Busch W., Van Norman JM, Vernoux T., Brady S.M., Dewitte W., Murray J.A., Benfey P.N. Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth. Nature 2010, 466:128-132.
-
(2010)
Nature
, vol.466
, pp. 128-132
-
-
Sozzani, R.1
Cui, H.2
Moreno-Risueno, M.A.3
Busch, W.4
Van Norman, J.M.5
Vernoux, T.6
Brady, S.M.7
Dewitte, W.8
Murray, J.A.9
Benfey, P.N.10
-
56
-
-
78149489254
-
Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root
-
Tsukagoshi H., Busch W., Benfey P.N. Transcriptional regulation of ROS controls transition from proliferation to differentiation in the root. Cell 2010, 143:606-616.
-
(2010)
Cell
, vol.143
, pp. 606-616
-
-
Tsukagoshi, H.1
Busch, W.2
Benfey, P.N.3
-
57
-
-
77956819375
-
The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots
-
Long T.A., Tsukagoshi H., Busch W., Lahner B., Salt D.E., Benfey P.N. The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots. Plant Cell 2010, 22:2219-2236.
-
(2010)
Plant Cell
, vol.22
, pp. 2219-2236
-
-
Long, T.A.1
Tsukagoshi, H.2
Busch, W.3
Lahner, B.4
Salt, D.E.5
Benfey, P.N.6
-
58
-
-
64749089220
-
Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis
-
Oh E., Kang H., Yamaguchi S., Park J., Lee D., Kamiya Y., Choi G. Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell 2009, 21:403-419.
-
(2009)
Plant Cell
, vol.21
, pp. 403-419
-
-
Oh, E.1
Kang, H.2
Yamaguchi, S.3
Park, J.4
Lee, D.5
Kamiya, Y.6
Choi, G.7
-
59
-
-
66149186985
-
Genomic location analysis by ChIP-Seq
-
Barski A., Zhao K. Genomic location analysis by ChIP-Seq. J Cell Biochem 2009, 107:11-18.
-
(2009)
J Cell Biochem
, vol.107
, pp. 11-18
-
-
Barski, A.1
Zhao, K.2
-
60
-
-
77749320166
-
Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP)
-
Kaufmann K., Muino J.M., Osteras M., Farinelli L., Krajewski P., Angenent G.C. Chromatin immunoprecipitation (ChIP) of plant transcription factors followed by sequencing (ChIP-SEQ) or hybridization to whole genome arrays (ChIP-CHIP). Nat Protoc 2010, 5:457-472.
-
(2010)
Nat Protoc
, vol.5
, pp. 457-472
-
-
Kaufmann, K.1
Muino, J.M.2
Osteras, M.3
Farinelli, L.4
Krajewski, P.5
Angenent, G.C.6
-
61
-
-
75649135574
-
RNA-seq: from technology to biology
-
Marguerat S., Bahler J. RNA-seq: from technology to biology. Cell Mol Life Sci 2010, 67:569-579.
-
(2010)
Cell Mol Life Sci
, vol.67
, pp. 569-579
-
-
Marguerat, S.1
Bahler, J.2
-
62
-
-
70349312354
-
ChIP-seq: advantages and challenges of a maturing technology
-
Park P.J. ChIP-seq: advantages and challenges of a maturing technology. Nat Rev Genet 2009, 10:669-680.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 669-680
-
-
Park, P.J.1
-
63
-
-
70449711243
-
Computation for ChIP-seq and RNA-seq studies
-
Pepke S., Wold B., Mortazavi A. Computation for ChIP-seq and RNA-seq studies. Nat Methods 2009, 6:S22-32.
-
(2009)
Nat Methods
, vol.6
-
-
Pepke, S.1
Wold, B.2
Mortazavi, A.3
-
64
-
-
57749195712
-
RNA-Seq: a revolutionary tool for transcriptomics
-
Wang Z., Gerstein M., Snyder M. RNA-Seq: a revolutionary tool for transcriptomics. Nat Rev Genet 2009, 10:57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
65
-
-
23144461287
-
Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines
-
Birnbaum K., Jung J.W., Wang J.Y., Lambert G.M., Hirst J.A., Galbraith D.W., Benfey P.N. Cell type-specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines. Nat Methods 2005, 2:615-619.
-
(2005)
Nat Methods
, vol.2
, pp. 615-619
-
-
Birnbaum, K.1
Jung, J.W.2
Wang, J.Y.3
Lambert, G.M.4
Hirst, J.A.5
Galbraith, D.W.6
Benfey, P.N.7
-
66
-
-
38149109010
-
A high-resolution root spatiotemporal map reveals dominant expression patterns
-
Brady S.M., Orlando D.A., Lee J.Y., Wang J.Y., Koch J., Dinneny J.R., Mace D., Ohler U., Benfey P.N. A high-resolution root spatiotemporal map reveals dominant expression patterns. Science 2007, 318:801-806.
-
(2007)
Science
, vol.318
, pp. 801-806
-
-
Brady, S.M.1
Orlando, D.A.2
Lee, J.Y.3
Wang, J.Y.4
Koch, J.5
Dinneny, J.R.6
Mace, D.7
Ohler, U.8
Benfey, P.N.9
-
67
-
-
63849261018
-
Gene expression map of the Arabidopsis shoot apical meristem stem cell niche
-
Yadav R.K., Girke T., Pasala S., Xie M., Reddy G.V. Gene expression map of the Arabidopsis shoot apical meristem stem cell niche. Proc Natl Acad Sci USA 2009, 106:4941-4946.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 4941-4946
-
-
Yadav, R.K.1
Girke, T.2
Pasala, S.3
Xie, M.4
Reddy, G.V.5
-
68
-
-
33746591797
-
Genome-wide analysis of gene expression during early Arabidopsis flower development
-
Wellmer F., Alves-Ferreira M., Dubois A., Riechmann J.L., Meyerowitz E.M. Genome-wide analysis of gene expression during early Arabidopsis flower development. PLoS Genet 2006, 2:e117.
-
(2006)
PLoS Genet
, vol.2
-
-
Wellmer, F.1
Alves-Ferreira, M.2
Dubois, A.3
Riechmann, J.L.4
Meyerowitz, E.M.5
-
69
-
-
0347447343
-
A gene expression map of the Arabidopsis root
-
Birnbaum K., Shasha D.E., Wang J.Y., Jung J.W., Lambert G.M., Galbraith D.W., Benfey P.N. A gene expression map of the Arabidopsis root. Science 2003, 302:1956-1960.
-
(2003)
Science
, vol.302
, pp. 1956-1960
-
-
Birnbaum, K.1
Shasha, D.E.2
Wang, J.Y.3
Jung, J.W.4
Lambert, G.M.5
Galbraith, D.W.6
Benfey, P.N.7
-
70
-
-
59149095771
-
A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies
-
Jiao Y., Tausta S.L., Gandotra N., Sun N., Liu T., Clay N.K., Ceserani T., Chen M., Ma L., Holford M., et al. A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies. Nat Genet 2009, 41:258-263.
-
(2009)
Nat Genet
, vol.41
, pp. 258-263
-
-
Jiao, Y.1
Tausta, S.L.2
Gandotra, N.3
Sun, N.4
Liu, T.5
Clay, N.K.6
Ceserani, T.7
Chen, M.8
Ma, L.9
Holford, M.10
-
71
-
-
73249145845
-
Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis
-
Mustroph A., Zanetti M.E., Jang C.J., Holtan H.E., Repetti P.P., Galbraith D.W., Girke T., Bailey-Serres J. Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis. Proc Natl Acad Sci USA 2009, 106:18843-18848.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, pp. 18843-18848
-
-
Mustroph, A.1
Zanetti, M.E.2
Jang, C.J.3
Holtan, H.E.4
Repetti, P.P.5
Galbraith, D.W.6
Girke, T.7
Bailey-Serres, J.8
-
72
-
-
77957799907
-
Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control
-
Jiao Y., Meyerowitz E.M. Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control. Mol Syst Biol 2010, 6:419.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 419
-
-
Jiao, Y.1
Meyerowitz, E.M.2
-
73
-
-
77955967051
-
A simple method for gene expression and chromatin profiling of individual cell types within a tissue
-
Deal R.B., Henikoff S. A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Dev Cell 2010, 18:1030-1040.
-
(2010)
Dev Cell
, vol.18
, pp. 1030-1040
-
-
Deal, R.B.1
Henikoff, S.2
-
74
-
-
77950410675
-
Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research
-
Benfey P.N., Bennett M., Schiefelbein J. Getting to the root of plant biology: impact of the Arabidopsis genome sequence on root research. Plant J 2010, 61:992-1000.
-
(2010)
Plant J
, vol.61
, pp. 992-1000
-
-
Benfey, P.N.1
Bennett, M.2
Schiefelbein, J.3
-
75
-
-
77956527844
-
Oscillating gene expression determines competence for periodic Arabidopsis root branching
-
Moreno-Risueno M.A., Van Norman J.M., Moreno A., Zhang J., Ahnert S.E., Benfey P.N. Oscillating gene expression determines competence for periodic Arabidopsis root branching. Science 2010, 329:1306-1311.
-
(2010)
Science
, vol.329
, pp. 1306-1311
-
-
Moreno-Risueno, M.A.1
Van Norman, J.M.2
Moreno, A.3
Zhang, J.4
Ahnert, S.E.5
Benfey, P.N.6
-
76
-
-
53349180597
-
Root layers: complex regulation of developmental patterning
-
Petricka J.J., Benfey P.N. Root layers: complex regulation of developmental patterning. Curr Opin Genet Dev 2008, 18:354-361.
-
(2008)
Curr Opin Genet Dev
, vol.18
, pp. 354-361
-
-
Petricka, J.J.1
Benfey, P.N.2
-
77
-
-
34247515226
-
An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants
-
Cui H., Levesque M.P., Vernoux T., Jung J.W., Paquette A.J., Gallagher K.L., Wang J.Y., Blilou I., Scheres B., Benfey P.N. An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants. Science 2007, 316:421-425.
-
(2007)
Science
, vol.316
, pp. 421-425
-
-
Cui, H.1
Levesque, M.P.2
Vernoux, T.3
Jung, J.W.4
Paquette, A.J.5
Gallagher, K.L.6
Wang, J.Y.7
Blilou, I.8
Scheres, B.9
Benfey, P.N.10
-
78
-
-
44249114568
-
Cell identity mediates the response of Arabidopsis roots to abiotic stress
-
Dinneny J.R., Long T.A., Wang J.Y., Jung J.W., Mace D., Pointer S., Barron C., Brady S.M., Schiefelbein J., Benfey P.N. Cell identity mediates the response of Arabidopsis roots to abiotic stress. Science 2008, 320:942-945.
-
(2008)
Science
, vol.320
, pp. 942-945
-
-
Dinneny, J.R.1
Long, T.A.2
Wang, J.Y.3
Jung, J.W.4
Mace, D.5
Pointer, S.6
Barron, C.7
Brady, S.M.8
Schiefelbein, J.9
Benfey, P.N.10
-
79
-
-
27644549049
-
Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem
-
Heisler M.G., Ohno C., Das P., Sieber P., Reddy G.V., Long J.A., Meyerowitz E.M. Patterns of auxin transport and gene expression during primordium development revealed by live imaging of the Arabidopsis inflorescence meristem. Curr Biol 2005, 15:1899-1911.
-
(2005)
Curr Biol
, vol.15
, pp. 1899-1911
-
-
Heisler, M.G.1
Ohno, C.2
Das, P.3
Sieber, P.4
Reddy, G.V.5
Long, J.A.6
Meyerowitz, E.M.7
-
80
-
-
77950591731
-
Arabidopsis regeneration from multiple tissues occurs via a root development pathway
-
Sugimoto K., Jiao Y., Meyerowitz E.M. Arabidopsis regeneration from multiple tissues occurs via a root development pathway. Dev Cell 2010, 18:463-471.
-
(2010)
Dev Cell
, vol.18
, pp. 463-471
-
-
Sugimoto, K.1
Jiao, Y.2
Meyerowitz, E.M.3
-
81
-
-
68949213578
-
Insights from genomic profiling of transcription factors
-
Farnham P.J. Insights from genomic profiling of transcription factors. Nat Rev Genet 2009, 10:605-616.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 605-616
-
-
Farnham, P.J.1
-
82
-
-
40149095913
-
Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm
-
Li X.Y., MacArthur S., Bourgon R., Nix D., Pollard D.A., Iyer V.N., Hechmer A., Simirenko L., Stapleton M., Luengo Hendriks C.L., et al. Transcription factors bind thousands of active and inactive regions in the Drosophila blastoderm. PLoS Biol 2008, 6:e27.
-
(2008)
PLoS Biol
, vol.6
-
-
Li, X.Y.1
MacArthur, S.2
Bourgon, R.3
Nix, D.4
Pollard, D.A.5
Iyer, V.N.6
Hechmer, A.7
Simirenko, L.8
Stapleton, M.9
Luengo Hendriks, C.L.10
-
83
-
-
68849103482
-
Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions
-
MacArthur S., Li X.Y., Li J., Brown J.B., Chu H.C., Zeng L., Grondona B.P., Hechmer A., Simirenko L., Keranen S.V., et al. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions. Genome Biol 2009, 10:R80.
-
(2009)
Genome Biol
, vol.10
-
-
MacArthur, S.1
Li, X.Y.2
Li, J.3
Brown, J.B.4
Chu, H.C.5
Zeng, L.6
Grondona, B.P.7
Hechmer, A.8
Simirenko, L.9
Keranen, S.V.10
-
84
-
-
77950566643
-
Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species
-
Bradley R.K., Li X.Y., Trapnell C., Davidson S., Pachter L., Chu H.C., Tonkin L.A., Biggin M.D., Eisen M.B. Binding site turnover produces pervasive quantitative changes in transcription factor binding between closely related Drosophila species. PLoS Biol 2010, 8:e1000343.
-
(2010)
PLoS Biol
, vol.8
-
-
Bradley, R.K.1
Li, X.Y.2
Trapnell, C.3
Davidson, S.4
Pachter, L.5
Chu, H.C.6
Tonkin, L.A.7
Biggin, M.D.8
Eisen, M.B.9
-
85
-
-
77957885770
-
Transcription factor binding variation in the evolution of gene regulation
-
Dowell R.D. Transcription factor binding variation in the evolution of gene regulation. Trends Genet 2010, 26:468-475.
-
(2010)
Trends Genet
, vol.26
, pp. 468-475
-
-
Dowell, R.D.1
-
86
-
-
75149132167
-
The strength of transcription-factor binding modulates co-variation in transcriptional networks
-
Nuzhdin S.V., Rychkova A., Hahn M.W. The strength of transcription-factor binding modulates co-variation in transcriptional networks. Trends Genet 2010, 26:51-53.
-
(2010)
Trends Genet
, vol.26
, pp. 51-53
-
-
Nuzhdin, S.V.1
Rychkova, A.2
Hahn, M.W.3
-
87
-
-
77951731536
-
Deciphering the genome's regulatory code: the many languages of DNA
-
Rister J., Desplan C. Deciphering the genome's regulatory code: the many languages of DNA. Bioessays 2010, 32:381-384.
-
(2010)
Bioessays
, vol.32
, pp. 381-384
-
-
Rister, J.1
Desplan, C.2
-
88
-
-
77957348024
-
The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation
-
Tuch B.B., Mitrovich Q.M., Homann O.R., Hernday A.D., Monighetti C.K., De La Vega F.M., Johnson A.D. The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation. PLoS Genet 2010, 6:e1001070.
-
(2010)
PLoS Genet
, vol.6
-
-
Tuch, B.B.1
Mitrovich, Q.M.2
Homann, O.R.3
Hernday, A.D.4
Monighetti, C.K.5
De La Vega, F.M.6
Johnson, A.D.7
-
89
-
-
77953992497
-
Dynamic CRM occupancy reflects a temporal map of developmental progression
-
Wilczynski B., Furlong E.E. Dynamic CRM occupancy reflects a temporal map of developmental progression. Mol Syst Biol 2010, 6:383.
-
(2010)
Mol Syst Biol
, vol.6
, pp. 383
-
-
Wilczynski, B.1
Furlong, E.E.2
-
90
-
-
77950578781
-
Variable transcription factor binding: a mechanism of evolutionary change
-
Wittkopp P.J. Variable transcription factor binding: a mechanism of evolutionary change. PLoS Biol 2010, 8:e1000342.
-
(2010)
PLoS Biol
, vol.8
-
-
Wittkopp, P.J.1
-
91
-
-
0005849132
-
Transcriptional regulation: a genomic overview
-
American Society of Plant Biologists, C.R. Somerville, E.M. Meyerowitz (Eds.)
-
Riechmann J.L. Transcriptional regulation: a genomic overview. The Arabidopsis Book 2002, American Society of Plant Biologists. C.R. Somerville, E.M. Meyerowitz (Eds.).
-
(2002)
The Arabidopsis Book
-
-
Riechmann, J.L.1
-
92
-
-
77957732862
-
Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture
-
Buell C.R., Last R.L. Twenty-first century plant biology: impacts of the Arabidopsis genome on plant biology and agriculture. Plant Physiol 2010, 154:497-500.
-
(2010)
Plant Physiol
, vol.154
, pp. 497-500
-
-
Buell, C.R.1
Last, R.L.2
-
93
-
-
77950299027
-
Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain
-
Yan J., Kandianis C.B., Harjes C.E., Bai L., Kim E.H., Yang X., Skinner D.J., Fu Z., Mitchell S., Li Q., et al. Rare genetic variation at Zea mays crtRB1 increases beta-carotene in maize grain. Nat Genet 2010, 42:322-327.
-
(2010)
Nat Genet
, vol.42
, pp. 322-327
-
-
Yan, J.1
Kandianis, C.B.2
Harjes, C.E.3
Bai, L.4
Kim, E.H.5
Yang, X.6
Skinner, D.J.7
Fu, Z.8
Mitchell, S.9
Li, Q.10
-
94
-
-
77952821615
-
Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice
-
Jiao Y., Wang Y., Xue D., Wang J., Yan M., Liu G., Dong G., Zeng D., Lu Z., Zhu X., et al. Regulation of OsSPL14 by OsmiR156 defines ideal plant architecture in rice. Nat Genet 2010, 42:541-544.
-
(2010)
Nat Genet
, vol.42
, pp. 541-544
-
-
Jiao, Y.1
Wang, Y.2
Xue, D.3
Wang, J.4
Yan, M.5
Liu, G.6
Dong, G.7
Zeng, D.8
Lu, Z.9
Zhu, X.10
-
95
-
-
77952885074
-
OsSPL14 promotes panicle branching and higher grain productivity in rice
-
Miura K., Ikeda M., Matsubara A., Song X.J., Ito M., Asano K., Matsuoka M., Kitano H., Ashikari M. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nat Genet 2010, 42:545-549.
-
(2010)
Nat Genet
, vol.42
, pp. 545-549
-
-
Miura, K.1
Ikeda, M.2
Matsubara, A.3
Song, X.J.4
Ito, M.5
Asano, K.6
Matsuoka, M.7
Kitano, H.8
Ashikari, M.9
-
96
-
-
70349101346
-
Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield
-
Li D., Wang L., Wang M., Xu Y.Y., Luo W., Liu Y.J., Xu Z.H., Li J., Chong K. Engineering OsBAK1 gene as a molecular tool to improve rice architecture for high yield. Plant Biotechnol J 2009, 7:791-806.
-
(2009)
Plant Biotechnol J
, vol.7
, pp. 791-806
-
-
Li, D.1
Wang, L.2
Wang, M.3
Xu, Y.Y.4
Luo, W.5
Liu, Y.J.6
Xu, Z.H.7
Li, J.8
Chong, K.9
-
97
-
-
77951769145
-
The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato
-
Krieger U., Lippman Z.B., Zamir D. The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nat Genet 2010, 42:459-463.
-
(2010)
Nat Genet
, vol.42
, pp. 459-463
-
-
Krieger, U.1
Lippman, Z.B.2
Zamir, D.3
-
98
-
-
74249116441
-
Fruit-surface flavonoid accumulation in tomato is controlled by a SlMYB12-regulated transcriptional network
-
Adato A., Mandel T., Mintz-Oron S., Venger I., Levy D., Yativ M., Dominguez E., Wang Z., De Vos R.C., Jetter R., et al. Fruit-surface flavonoid accumulation in tomato is controlled by a SlMYB12-regulated transcriptional network. PLoS Genet 2009, 5:e1000777.
-
(2009)
PLoS Genet
, vol.5
-
-
Adato, A.1
Mandel, T.2
Mintz-Oron, S.3
Venger, I.4
Levy, D.5
Yativ, M.6
Dominguez, E.7
Wang, Z.8
De Vos, R.C.9
Jetter, R.10
-
99
-
-
33745068992
-
Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants
-
Thibaud-Nissen F., Wu H., Richmond T., Redman J.C., Johnson C., Green R., Arias J., Town C.D. Development of Arabidopsis whole-genome microarrays and their application to the discovery of binding sites for the TGA2 transcription factor in salicylic acid-treated plants. Plant J 2006, 47:152-162.
-
(2006)
Plant J
, vol.47
, pp. 152-162
-
-
Thibaud-Nissen, F.1
Wu, H.2
Richmond, T.3
Redman, J.C.4
Johnson, C.5
Green, R.6
Arias, J.7
Town, C.D.8
-
100
-
-
34250780751
-
Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development
-
Lee J., He K., Stolc V., Lee H., Figueroa P., Gao Y., Tongprasit W., Zhao H., Lee I., Deng X.W. Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell 2007, 19:731-749.
-
(2007)
Plant Cell
, vol.19
, pp. 731-749
-
-
Lee, J.1
He, K.2
Stolc, V.3
Lee, H.4
Figueroa, P.5
Gao, Y.6
Tongprasit, W.7
Zhao, H.8
Lee, I.9
Deng, X.W.10
-
101
-
-
70849092086
-
Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15
-
Zheng Y., Ren N., Wang H., Stromberg A.J., Perry S.E. Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15. Plant Cell 2009, 21:2563-2577.
-
(2009)
Plant Cell
, vol.21
, pp. 2563-2577
-
-
Zheng, Y.1
Ren, N.2
Wang, H.3
Stromberg, A.J.4
Perry, S.E.5
-
102
-
-
77956814611
-
Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes
-
Xie Z., Lee E., Lucas J.R., Morohashi K., Li D., Murray J.A., Sack F.D., Grotewold E. Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes. Plant Cell 2010, 22:2306-2321.
-
(2010)
Plant Cell
, vol.22
, pp. 2306-2321
-
-
Xie, Z.1
Lee, E.2
Lucas, J.R.3
Morohashi, K.4
Li, D.5
Murray, J.A.6
Sack, F.D.7
Grotewold, E.8
-
103
-
-
34250681756
-
Specification of Arabidopsis floral meristem identity by repression of flowering time genes
-
Liu C., Zhou J., Bracha-Drori K., Yalovsky S., Ito T., Yu H. Specification of Arabidopsis floral meristem identity by repression of flowering time genes. Development 2007, 134:1901-1910.
-
(2007)
Development
, vol.134
, pp. 1901-1910
-
-
Liu, C.1
Zhou, J.2
Bracha-Drori, K.3
Yalovsky, S.4
Ito, T.5
Yu, H.6
-
104
-
-
0842289256
-
Repression of AGAMOUS-LIKE 24 is a crucial step in promoting flower development
-
Yu H., Ito T., Wellmer F., Meyerowitz E.M. Repression of AGAMOUS-LIKE 24 is a crucial step in promoting flower development. Nat Genet 2004, 36:157-161.
-
(2004)
Nat Genet
, vol.36
, pp. 157-161
-
-
Yu, H.1
Ito, T.2
Wellmer, F.3
Meyerowitz, E.M.4
|