-
1
-
-
10944267031
-
Light signal transduction in higher plants
-
Chen M., et al. Light signal transduction in higher plants. Annu. Rev. Genet. 38 (2004) 87-117
-
(2004)
Annu. Rev. Genet.
, vol.38
, pp. 87-117
-
-
Chen, M.1
-
2
-
-
22044444886
-
FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis
-
Imaizumi T., et al. FKF1 F-box protein mediates cyclic degradation of a repressor of CONSTANS in Arabidopsis. Science 309 (2005) 293-297
-
(2005)
Science
, vol.309
, pp. 293-297
-
-
Imaizumi, T.1
-
3
-
-
1542437580
-
The F-Box protein ZEITLUPE confers dosage-dependent control on the circadian clock, photomorphogenesis, and flowering time
-
Somers D.E., et al. The F-Box protein ZEITLUPE confers dosage-dependent control on the circadian clock, photomorphogenesis, and flowering time. Plant Cell 16 (2004) 769-782
-
(2004)
Plant Cell
, vol.16
, pp. 769-782
-
-
Somers, D.E.1
-
4
-
-
0037435618
-
The LOV domain family: photoresponsive signaling modules coupled to diverse output domains
-
Crosson S., et al. The LOV domain family: photoresponsive signaling modules coupled to diverse output domains. Biochemistry 42 (2003) 2-10
-
(2003)
Biochemistry
, vol.42
, pp. 2-10
-
-
Crosson, S.1
-
6
-
-
33745215597
-
Phytochrome signaling
-
Briggs W.R., and Spudich J.L. (Eds), Wiley-VCH
-
Huq E., and Quail P.H. Phytochrome signaling. In: Briggs W.R., and Spudich J.L. (Eds). Handbook of Photosensory Receptors (2005), Wiley-VCH 151-170
-
(2005)
Handbook of Photosensory Receptors
, pp. 151-170
-
-
Huq, E.1
Quail, P.H.2
-
7
-
-
3843123025
-
Heterodimerization of type II phytochromes in Arabidopsis
-
Sharrock R.A., and Clack T. Heterodimerization of type II phytochromes in Arabidopsis. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 11500-11505
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 11500-11505
-
-
Sharrock, R.A.1
Clack, T.2
-
8
-
-
33745938554
-
Phytochrome structure and signaling mechanisms
-
Rockwell N.C., et al. Phytochrome structure and signaling mechanisms. Annu. Rev. Plant Biol. 57 (2006) 837-858
-
(2006)
Annu. Rev. Plant Biol.
, vol.57
, pp. 837-858
-
-
Rockwell, N.C.1
-
9
-
-
0033519222
-
Light-dependent translocation of a phytochrome B-GFP fusion protein to the nucleus in transgenic Arabidopsis
-
Yamaguchi R., et al. Light-dependent translocation of a phytochrome B-GFP fusion protein to the nucleus in transgenic Arabidopsis. J. Cell Biol. 145 (1999) 437-445
-
(1999)
J. Cell Biol.
, vol.145
, pp. 437-445
-
-
Yamaguchi, R.1
-
10
-
-
17144394187
-
Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals
-
Chen M., et al. Regulation of phytochrome B nuclear localization through light-dependent unmasking of nuclear-localization signals. Curr. Biol. 15 (2005) 637-642
-
(2005)
Curr. Biol.
, vol.15
, pp. 637-642
-
-
Chen, M.1
-
11
-
-
0141458056
-
Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis
-
Huq E., et al. Nuclear translocation of the photoreceptor phytochrome B is necessary for its biological function in seedling photomorphogenesis. Plant J. 35 (2003) 660-664
-
(2003)
Plant J.
, vol.35
, pp. 660-664
-
-
Huq, E.1
-
12
-
-
0042068123
-
Dimers of the N-terminal domain of phytochrome B are functional in the nucleus
-
Matsushita T., et al. Dimers of the N-terminal domain of phytochrome B are functional in the nucleus. Nature 424 (2003) 571-574
-
(2003)
Nature
, vol.424
, pp. 571-574
-
-
Matsushita, T.1
-
13
-
-
33749002544
-
FHY1 and FHL act together to mediate nuclear accumulation of the phytochrome A photoreceptor
-
Hiltbrunner A., et al. FHY1 and FHL act together to mediate nuclear accumulation of the phytochrome A photoreceptor. Plant Cell Physiol. 47 (2006) 1023-1034
-
(2006)
Plant Cell Physiol.
, vol.47
, pp. 1023-1034
-
-
Hiltbrunner, A.1
-
14
-
-
34547514531
-
Arabidopsis fhl/fhy1 double mutant reveals a distinct cytoplasmic action of phytochrome A
-
Rösler J., et al. Arabidopsis fhl/fhy1 double mutant reveals a distinct cytoplasmic action of phytochrome A. Proc. Natl. Acad. Sci. U. S. A. 104 (2007) 10737-10742
-
(2007)
Proc. Natl. Acad. Sci. U. S. A.
, vol.104
, pp. 10737-10742
-
-
Rösler, J.1
-
15
-
-
0035984054
-
Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm
-
Kircher S., et al. Nucleocytoplasmic partitioning of the plant photoreceptors phytochrome A, B, C, D, and E is regulated differentially by light and exhibits a diurnal rhythm. Plant Cell 14 (2002) 1541-1555
-
(2002)
Plant Cell
, vol.14
, pp. 1541-1555
-
-
Kircher, S.1
-
16
-
-
33749237560
-
phyA dominates in transduction of red-light signals to rapidly-responding genes at the initiation of Arabidopsis seedling deetiolation
-
Tepperman J.M., et al. phyA dominates in transduction of red-light signals to rapidly-responding genes at the initiation of Arabidopsis seedling deetiolation. Plant J. 48 (2006) 728-742
-
(2006)
Plant J.
, vol.48
, pp. 728-742
-
-
Tepperman, J.M.1
-
17
-
-
33846115053
-
Phytochrome-regulated gene expression
-
Quail P.H. Phytochrome-regulated gene expression. J. Integr. Plant Biol. 49 (2007) 11-20
-
(2007)
J. Integr. Plant Biol.
, vol.49
, pp. 11-20
-
-
Quail, P.H.1
-
18
-
-
33847042609
-
Light-regulated transcriptional networks in higher plants
-
Jiao Y., et al. Light-regulated transcriptional networks in higher plants. Nat. Rev. Genet. 8 (2007) 217-230
-
(2007)
Nat. Rev. Genet.
, vol.8
, pp. 217-230
-
-
Jiao, Y.1
-
19
-
-
0032567039
-
PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein
-
Ni M., et al. PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein. Cell 95 (1998) 657-667
-
(1998)
Cell
, vol.95
, pp. 657-667
-
-
Ni, M.1
-
20
-
-
0034700115
-
Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3
-
Zhu Y., et al. Phytochrome B binds with greater apparent affinity than phytochrome A to the basic helix-loop-helix factor PIF3 in a reaction requiring the PAS domain of PIF3. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 13419-13424
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 13419-13424
-
-
Zhu, Y.1
-
21
-
-
0036789439
-
A light-switchable gene promoter system
-
Shimizu-Sato S., et al. A light-switchable gene promoter system. Nat. Biotechnol. 20 (2002) 1041-1044
-
(2002)
Nat. Biotechnol.
, vol.20
, pp. 1041-1044
-
-
Shimizu-Sato, S.1
-
22
-
-
0033584359
-
Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light
-
Ni M., et al. Binding of phytochrome B to its nuclear signalling partner PIF3 is reversibly induced by light. Nature 400 (1999) 781-784
-
(1999)
Nature
, vol.400
, pp. 781-784
-
-
Ni, M.1
-
23
-
-
0037093501
-
PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis
-
Huq E., and Quail P.H. PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J. 21 (2002) 2441-2450
-
(2002)
EMBO J.
, vol.21
, pp. 2441-2450
-
-
Huq, E.1
Quail, P.H.2
-
24
-
-
4644286644
-
Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis
-
Huq E., et al. Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science 305 (2004) 1937-1941
-
(2004)
Science
, vol.305
, pp. 1937-1941
-
-
Huq, E.1
-
25
-
-
13744261351
-
A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors
-
Khanna R., et al. A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors. Plant Cell 16 (2004) 3033-3044
-
(2004)
Plant Cell
, vol.16
, pp. 3033-3044
-
-
Khanna, R.1
-
26
-
-
0038303287
-
A link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana
-
Yamashino T., et al. A link between circadian-controlled bHLH factors and the APRR1/TOC1 quintet in Arabidopsis thaliana. Plant Cell Physiol. 44 (2003) 619-629
-
(2003)
Plant Cell Physiol.
, vol.44
, pp. 619-629
-
-
Yamashino, T.1
-
27
-
-
0042421751
-
The Arabidopsis basic/helix-loop-helix transcription factor family
-
Toledo-Ortiz G., et al. The Arabidopsis basic/helix-loop-helix transcription factor family. Plant Cell 15 (2003) 1749-1770
-
(2003)
Plant Cell
, vol.15
, pp. 1749-1770
-
-
Toledo-Ortiz, G.1
-
28
-
-
13744263437
-
bHLH class transcription factors take centre stage in phytochrome signalling
-
Duek P.D., and Fankhauser C. bHLH class transcription factors take centre stage in phytochrome signalling. Trends Plant Sci. 10 (2005) 51-54
-
(2005)
Trends Plant Sci.
, vol.10
, pp. 51-54
-
-
Duek, P.D.1
Fankhauser, C.2
-
29
-
-
0041029474
-
Direct targeting of light signals to a promoter element-bound transcription factor
-
Martinez-Garcia J.F., et al. Direct targeting of light signals to a promoter element-bound transcription factor. Science 288 (2000) 859-863
-
(2000)
Science
, vol.288
, pp. 859-863
-
-
Martinez-Garcia, J.F.1
-
30
-
-
0003504026
-
-
Littlewood T., and Evans G.I. (Eds), Oxford University Press
-
In: Littlewood T., and Evans G.I. (Eds). Helix-loop-helix Transcription Factors (1998), Oxford University Press
-
(1998)
Helix-loop-helix Transcription Factors
-
-
-
31
-
-
0033980393
-
Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms
-
Massari M.E., and Murre C. Helix-loop-helix proteins: Regulators of transcription in eucaryotic organisms. Mol. Cell. Biol. 20 (2000) 429-440
-
(2000)
Mol. Cell. Biol.
, vol.20
, pp. 429-440
-
-
Massari, M.E.1
Murre, C.2
-
32
-
-
0034665886
-
HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction
-
Fairchild C.D., et al. HFR1 encodes an atypical bHLH protein that acts in phytochrome A signal transduction. Genes Dev. 14 (2000) 2377-2391
-
(2000)
Genes Dev.
, vol.14
, pp. 2377-2391
-
-
Fairchild, C.D.1
-
33
-
-
0038079850
-
HFR1, a putative bHLH-transcription factor, mediates both phytochrome A and cryptochrome signaling
-
Duek P.D., and Fankhauser C. HFR1, a putative bHLH-transcription factor, mediates both phytochrome A and cryptochrome signaling. Plant J. 34 (2003) 827-836
-
(2003)
Plant J.
, vol.34
, pp. 827-836
-
-
Duek, P.D.1
Fankhauser, C.2
-
34
-
-
33746428382
-
Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation
-
Al-Sady B., et al. Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation. Mol. Cell 23 (2006) 439-446
-
(2006)
Mol. Cell
, vol.23
, pp. 439-446
-
-
Al-Sady, B.1
-
35
-
-
0033612143
-
PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis
-
Fankhauser C., et al. PKS1, a substrate phosphorylated by phytochrome that modulates light signaling in Arabidopsis. Science 284 (1999) 1539-1541
-
(1999)
Science
, vol.284
, pp. 1539-1541
-
-
Fankhauser, C.1
-
36
-
-
0033533818
-
Phytochrome signalling is mediated through nucleoside diphosphate kinase 2
-
Choi G., et al. Phytochrome signalling is mediated through nucleoside diphosphate kinase 2. Nature 401 (1999) 610-613
-
(1999)
Nature
, vol.401
, pp. 610-613
-
-
Choi, G.1
-
37
-
-
13744259556
-
PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana
-
Oh E., et al. PIL5, a phytochrome-interacting basic helix-loop-helix protein, is a key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell 16 (2004) 3045-3058
-
(2004)
Plant Cell
, vol.16
, pp. 3045-3058
-
-
Oh, E.1
-
38
-
-
9244261581
-
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development
-
Monte E., et al. The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc. Natl. Acad. Sci. U. S. A. 101 (2004) 16091-16098
-
(2004)
Proc. Natl. Acad. Sci. U. S. A.
, vol.101
, pp. 16091-16098
-
-
Monte, E.1
-
39
-
-
0142124082
-
Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction
-
Kim J., et al. Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction. Plant Cell 15 (2003) 2399-2407
-
(2003)
Plant Cell
, vol.15
, pp. 2399-2407
-
-
Kim, J.1
-
40
-
-
4644229612
-
Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana
-
Fujimori T., et al. Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana. Plant Cell Physiol. 45 (2004) 1078-1086
-
(2004)
Plant Cell Physiol.
, vol.45
, pp. 1078-1086
-
-
Fujimori, T.1
-
41
-
-
34447520296
-
Rhythmic growth explained by coincidence between internal and external cues
-
Nozue K., et al. Rhythmic growth explained by coincidence between internal and external cues. Nature 448 (2007) 358-361
-
(2007)
Nature
, vol.448
, pp. 358-361
-
-
Nozue, K.1
-
42
-
-
0036484368
-
Phytochrome photosensory signalling networks
-
Quail P.H. Phytochrome photosensory signalling networks. Nat. Rev. Mol. Cell Biol. 3 (2002) 85-93
-
(2002)
Nat. Rev. Mol. Cell Biol.
, vol.3
, pp. 85-93
-
-
Quail, P.H.1
-
43
-
-
34250651201
-
PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by directly binding to the GAI and RGA promoters in Arabidopsis seeds
-
Oh E., et al. PIL5, a phytochrome-interacting bHLH protein, regulates gibberellin responsiveness by directly binding to the GAI and RGA promoters in Arabidopsis seeds. Plant Cell 19 (2007) 1192-1208
-
(2007)
Plant Cell
, vol.19
, pp. 1192-1208
-
-
Oh, E.1
-
44
-
-
33847345588
-
PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis
-
Shin J., et al. PIF3 regulates anthocyanin biosynthesis in an HY5-dependent manner with both factors directly binding anthocyanin biosynthetic gene promoters in Arabidopsis. Plant J. 49 (2007) 981-994
-
(2007)
Plant J.
, vol.49
, pp. 981-994
-
-
Shin, J.1
-
45
-
-
34047234460
-
High-throughput methods of regulatory element discovery
-
Hudson M.E., and Snyder M. High-throughput methods of regulatory element discovery. Biotechniques 41 (2006) 673-681
-
(2006)
Biotechniques
, vol.41
, pp. 673-681
-
-
Hudson, M.E.1
Snyder, M.2
-
46
-
-
33646510364
-
Genome-wide analysis of protein-DNA interactions
-
Kim T.H., and Ren B. Genome-wide analysis of protein-DNA interactions. Annu. Rev. Genomics Hum. Genet. 7 (2006) 81-102
-
(2006)
Annu. Rev. Genomics Hum. Genet.
, vol.7
, pp. 81-102
-
-
Kim, T.H.1
Ren, B.2
-
47
-
-
33644878135
-
PIF1 is regulated by light-mediated degradation through the ubiquitin/26S proteasome pathway to optimize seedling photomorphogenesis in Arabidopsis
-
Shen H., et al. PIF1 is regulated by light-mediated degradation through the ubiquitin/26S proteasome pathway to optimize seedling photomorphogenesis in Arabidopsis. Plant J. 44 (2005) 1023-1035
-
(2005)
Plant J.
, vol.44
, pp. 1023-1035
-
-
Shen, H.1
-
48
-
-
33745096514
-
Light activates the degradation of PIL5 to promote seed germination through gibberellin in Arabidopsis
-
Oh E., et al. Light activates the degradation of PIL5 to promote seed germination through gibberellin in Arabidopsis. Plant J. 47 (2006) 124-139
-
(2006)
Plant J.
, vol.47
, pp. 124-139
-
-
Oh, E.1
-
49
-
-
4644354063
-
Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling
-
Park E., et al. Degradation of phytochrome interacting factor 3 in phytochrome-mediated light signaling. Plant Cell Physiol. 45 (2004) 968-975
-
(2004)
Plant Cell Physiol.
, vol.45
, pp. 968-975
-
-
Park, E.1
-
50
-
-
2942685745
-
Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis
-
Bauer D., et al. Constitutive photomorphogenesis 1 and multiple photoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell 16 (2004) 1433-1445
-
(2004)
Plant Cell
, vol.16
, pp. 1433-1445
-
-
Bauer, D.1
-
51
-
-
34247230278
-
A new CUL1 mutant has altered responses to hormones and light in Arabidopsis thaliana
-
Moon J., et al. A new CUL1 mutant has altered responses to hormones and light in Arabidopsis thaliana. Plant Physiol. 143 (2007) 684-696
-
(2007)
Plant Physiol.
, vol.143
, pp. 684-696
-
-
Moon, J.1
-
52
-
-
30144436107
-
Degradation of negative regulators: a common theme in hormone and light signaling networks?
-
Huq E. Degradation of negative regulators: a common theme in hormone and light signaling networks?. Trends Plant Sci. 11 (2006) 4-7
-
(2006)
Trends Plant Sci.
, vol.11
, pp. 4-7
-
-
Huq, E.1
-
53
-
-
0034915764
-
Mechanisms underlying ubiquitination
-
Pickart C.M. Mechanisms underlying ubiquitination. Annu. Rev. Biochem. 70 (2001) 503-533
-
(2001)
Annu. Rev. Biochem.
, vol.70
, pp. 503-533
-
-
Pickart, C.M.1
-
54
-
-
35549002118
-
Interaction of light and hormone signalling to mediate photomorphogenesis
-
Schäfer E., and Nagy F. (Eds), Springer
-
Neff M.M., et al. Interaction of light and hormone signalling to mediate photomorphogenesis. In: Schäfer E., and Nagy F. (Eds). Photomorphogenesis in Plants and Bacteria. 3rd edn (2006), Springer 439-473
-
(2006)
Photomorphogenesis in Plants and Bacteria. 3rd edn
, pp. 439-473
-
-
Neff, M.M.1
-
55
-
-
0032506138
-
Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry
-
Yeh K.C., and Lagarias J.C. Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. Proc. Natl. Acad. Sci. U. S. A. 95 (1998) 13976-13981
-
(1998)
Proc. Natl. Acad. Sci. U. S. A.
, vol.95
, pp. 13976-13981
-
-
Yeh, K.C.1
Lagarias, J.C.2
-
56
-
-
0034608882
-
The histidine kinase-related domain participates in phytochrome B function but is dispensable
-
Krall L., and Reed J.W. The histidine kinase-related domain participates in phytochrome B function but is dispensable. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 8169-8174
-
(2000)
Proc. Natl. Acad. Sci. U. S. A.
, vol.97
, pp. 8169-8174
-
-
Krall, L.1
Reed, J.W.2
-
57
-
-
0035430282
-
Transcriptional regulation by the phosphorylation-dependent factor CREB
-
Mayr B., and Montminy M. Transcriptional regulation by the phosphorylation-dependent factor CREB. Nat. Rev. Mol. Cell Biol. 2 (2001) 599-609
-
(2001)
Nat. Rev. Mol. Cell Biol.
, vol.2
, pp. 599-609
-
-
Mayr, B.1
Montminy, M.2
-
58
-
-
0037335034
-
How the ubiquitin-proeasome system controls transcription
-
Muratani M., and Tansey W.P. How the ubiquitin-proeasome system controls transcription. Nat. Rev. Mol. Cell Biol. 4 (2003) 1-10
-
(2003)
Nat. Rev. Mol. Cell Biol.
, vol.4
, pp. 1-10
-
-
Muratani, M.1
Tansey, W.P.2
-
59
-
-
13444264729
-
GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox
-
Zimmermann P., et al. GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol. 136 (2004) 2621-2632
-
(2004)
Plant Physiol.
, vol.136
, pp. 2621-2632
-
-
Zimmermann, P.1
|