-
1
-
-
0142124082
-
Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction
-
Kim J, et al. (2003) Functional characterization of phytochrome interacting factor 3 in phytochrome-mediated light signal transduction. Plant Cell 15:2399-2407.
-
(2003)
Plant Cell
, vol.15
, pp. 2399-2407
-
-
Kim, J.1
-
2
-
-
0032567039
-
PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein
-
Ni M,Tepperman JM, Quail PH (1998) PIF3, a phytochrome-interacting factor necessary for normal photoinduced signal transduction, is a novel basic helix-loop-helix protein. Cell 95:657-667.
-
(1998)
Cell
, vol.95
, pp. 657-667
-
-
Ni, M.1
Tepperman, J.M.2
Quail, P.H.3
-
3
-
-
9244261581
-
The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development
-
Monte E, et al. (2004) The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development. Proc Natl Acad Sci USA 101:16091-16098.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 16091-16098
-
-
Monte, E.1
-
4
-
-
0042421751
-
The Arabidopsis basic helix-loop-helix transcription factor family
-
Toledo-Ortiz G, Huq E, Quail PH (2003) The Arabidopsis basic helix-loop-helix transcription factor family. Plant Cell 15:1749-1770.
-
(2003)
Plant Cell
, vol.15
, pp. 1749-1770
-
-
Toledo-Ortiz, G.1
Huq, E.2
Quail, P.H.3
-
5
-
-
13744263437
-
bHLH class transcription factors take center stage in phytochrome signalling
-
Duek PD, Fankhauser C (2005) bHLH class transcription factors take center stage in phytochrome signalling. Trends Plant Sci 10:51-54.
-
(2005)
Trends Plant Sci
, vol.10
, pp. 51-54
-
-
Duek, P.D.1
Fankhauser, C.2
-
6
-
-
48249088161
-
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels
-
Leivar P, et al. (2008) The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels. Plant Cell 20:337-352.
-
(2008)
Plant Cell
, vol.20
, pp. 337-352
-
-
Leivar, P.1
-
7
-
-
13744261351
-
A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors
-
Khanna R, et al. (2004) A novel molecular recognition motif necessary for targeting photoactivated phytochrome signaling to specific basic helix-loop-helix transcription factors. Plant Cell 16:3033-3044.
-
(2004)
Plant Cell
, vol.16
, pp. 3033-3044
-
-
Khanna, R.1
-
8
-
-
0037093501
-
PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis
-
Huq E, Quail PH (2002) PIF4, a phytochrome-interacting bHLH factor, functions as a negative regulator of phytochrome B signaling in Arabidopsis. EMBO J 21:2441-2450.
-
(2002)
EMBO J
, vol.21
, pp. 2441-2450
-
-
Huq, E.1
Quail, P.H.2
-
9
-
-
4644229612
-
Circadian-controlled basic helixloop-helixfactor, PIL6, implicated in light-signal transduction in Arabidopsisthaliana
-
Fujimori T, Yamashino T, Kato T, Mizuno T (2004) Circadian-controlled basic helixloop-helixfactor, PIL6, implicated in light-signal transduction in Arabidopsisthaliana. Plant Cell Physiol 45:1078-1086.
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 1078-1086
-
-
Fujimori, T.1
Yamashino, T.2
Kato, T.3
Mizuno, T.4
-
10
-
-
13744259556
-
PIL5, a phytochrome-interacting basic helix-loop-helixprotein, isa key negative regulator of seed germination in Arabidopsis thaliana
-
Oh E, etal. (2004) PIL5, a phytochrome-interacting basic helix-loop-helixprotein, isa key negative regulator of seed germination in Arabidopsis thaliana. Plant Cell 16:3045-3058.
-
(2004)
Plant Cell
, vol.16
, pp. 3045-3058
-
-
Oh, E.1
-
11
-
-
4644286644
-
Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis
-
Huq E, et al. (2004) Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis. Science 305:1937-1941.
-
(2004)
Science
, vol.305
, pp. 1937-1941
-
-
Huq, E.1
-
12
-
-
37749031518
-
Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors
-
Lorrain S, Allen T, Duek PD, Whitelam GC, Fankhauser C (2008) Phytochrome-mediated inhibition of shade avoidance involves degradation of growth-promoting bHLH transcription factors. Plant J53:312-323.
-
(2008)
Plant J
, vol.53
, pp. 312-323
-
-
Lorrain, S.1
Allen, T.2
Duek, P.D.3
Whitelam, G.C.4
Fankhauser, C.5
-
13
-
-
0346258011
-
Gating of the rapid shade-avoidance response by the circadian clock in plants
-
Salter MG, Franklin KA, Whitelam GC (2003) Gating of the rapid shade-avoidance response by the circadian clock in plants. Nature 426:680-683.
-
(2003)
Nature
, vol.426
, pp. 680-683
-
-
Salter, M.G.1
Franklin, K.A.2
Whitelam, G.C.3
-
14
-
-
0030295130
-
Nuclear localization activityof phytochrome B
-
Sakamoto K, Nagatani A (1996) Nuclear localization activityof phytochrome B. Plant J10:859-868.
-
(1996)
Plant J
, vol.10
, pp. 859-868
-
-
Sakamoto, K.1
Nagatani, A.2
-
15
-
-
2942685745
-
Constitutive photomorphogenesis1 and multiplephotoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis
-
BauerD,etal. (2004)Constitutive photomorphogenesis1 and multiplephotoreceptors control degradation of phytochrome interacting factor 3, a transcription factor required for light signaling in Arabidopsis. Plant Cell 16:1433-1445.
-
(2004)
Plant Cell
, vol.16
, pp. 1433-1445
-
-
BauerD1
-
16
-
-
0033519222
-
Light-dependent translocation of a phytochrome B-GFP fusion protein to the nucleus in transgenic Arabidopsis
-
Yamaguchi R, Nakamura M, Mochizuki N, KaySA, Nagatani A(1999) Light-dependent translocation of a phytochrome B-GFP fusion protein to the nucleus in transgenic Arabidopsis. J Cell Biol 145:437-445.
-
(1999)
J Cell Biol
, vol.145
, pp. 437-445
-
-
Yamaguchi, R.1
Nakamura, M.2
Mochizuki, N.3
Kay, S.A.4
Nagatani, A.5
-
17
-
-
0032724828
-
Light quality-dependent nuclear import of the plant photoreceptors phytochrome A and B
-
Kircher S, et al. (1999) Light quality-dependent nuclear import of the plant photoreceptors phytochrome A and B. Plant Cell 11:1445-1456.
-
(1999)
Plant Cell
, vol.11
, pp. 1445-1456
-
-
Kircher, S.1
-
18
-
-
33746428382
-
Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation
-
Al-Sady B, Ni W, Kircher S, Schafer E, Quail PH (2006) Photoactivated phytochrome induces rapid PIF3 phosphorylation prior to proteasome-mediated degradation. Mol Cell 23:439-446.
-
(2006)
Mol Cell
, vol.23
, pp. 439-446
-
-
Al-Sady, B.1
Ni, W.2
Kircher, S.3
Schafer, E.4
Quail, P.H.5
-
19
-
-
4644354063
-
Degradation ofphytochrome interacting factor 3 in phytochromemediated light signaling
-
Park E, et al. (2004) Degradation ofphytochrome interacting factor 3 in phytochromemediated light signaling. Plant Cell Physiol 45:968-975.
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 968-975
-
-
Park, E.1
-
20
-
-
34447520296
-
Rhythmicgrowth explainedbycoincidencebetween internal and external cues
-
NozueK,etal. (2007)Rhythmicgrowth explainedbycoincidencebetween internal and external cues. Nature 448:358-361.
-
(2007)
Nature
, vol.448
, pp. 358-361
-
-
NozueK1
-
21
-
-
33745096514
-
Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis
-
Oh E, et al. (2006) Light activates the degradation of PIL5 protein to promote seed germination through gibberellin in Arabidopsis. Plant J47:124-139.
-
(2006)
Plant J47
, pp. 124-139
-
-
Oh, E.1
-
22
-
-
33644878135
-
PIF1 isregulated bylight-mediated degradation through theubiquitin-26S proteasome pathwaytooptimize photomorphogenesisofseedlings in Arabidopsis
-
Shen H, Moon J, Huq E (2005)PIF1 isregulated bylight-mediated degradation through theubiquitin-26S proteasome pathwaytooptimize photomorphogenesisofseedlings in Arabidopsis. Plant J44:1023-1035.
-
(2005)
Plant J44
, pp. 1023-1035
-
-
Shen, H.1
Moon, J.2
Huq, E.3
-
23
-
-
44949106384
-
Decoding of light signals by plant phytochromes and their interacting proteins
-
Bae G, Choi G (2008) Decoding of light signals by plant phytochromes and their interacting proteins. Annu RevPlant Biol 59:281-311.
-
(2008)
Annu RevPlant Biol
, vol.59
, pp. 281-311
-
-
Bae, G.1
Choi, G.2
-
24
-
-
0035852789
-
Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction
-
Mochizuki N, Brusslan JA, Larkin R, Nagatani A, Chory J (2001) Arabidopsis genomes uncoupled 5 (GUN5) mutant reveals the involvement of Mg-chelatase H subunit in plastid-to-nucleus signal transduction. Proc Natl Acad Sci USA 98:2053-2058.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 2053-2058
-
-
Mochizuki, N.1
Brusslan, J.A.2
Larkin, R.3
Nagatani, A.4
Chory, J.5
-
25
-
-
24044440971
-
BiNGO: A Cytoscape plug-in to assess overrepresentation of gene ontology categories in biological networks
-
Maere S, Heymans K, Kuiper M (2005) BiNGO: A Cytoscape plug-in to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 21:3448-3449.
-
(2005)
Bioinformatics
, vol.21
, pp. 3448-3449
-
-
Maere, S.1
Heymans, K.2
Kuiper, M.3
-
26
-
-
4444342898
-
Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis with a mini-array system
-
Matsumoto F, et al. (2004) Gene expression profiling of the tetrapyrrole metabolic pathway in Arabidopsis with a mini-array system. Plant Physiol 135:2379-2391.
-
(2004)
Plant Physiol
, vol.135
, pp. 2379-2391
-
-
Matsumoto, F.1
-
27
-
-
48249094269
-
PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis
-
Moon J, Zhu L, Shen H, Huq E (2008) PIF1 directly and indirectly regulates chlorophyll biosynthesis to optimize the greening process in Arabidopsis. Proc Natl Acad Sci USA 105:9433-9438.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, pp. 9433-9438
-
-
Moon, J.1
Zhu, L.2
Shen, H.3
Huq, E.4
-
28
-
-
34548309457
-
Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants
-
Su YS, Lagarias JC (2007) Light-independent phytochrome signaling mediated by dominant GAF domain tyrosine mutants of Arabidopsis phytochromes in transgenic plants. Plant Cell 19:2124-2139.
-
(2007)
Plant Cell
, vol.19
, pp. 2124-2139
-
-
Su, Y.S.1
Lagarias, J.C.2
-
29
-
-
66249146020
-
-
eds Whitelam GC, Halliday KJ Blackwell, Oxford, pp
-
Feng S, Deng XW (2007) in Light and Plant Development, eds Whitelam GC, Halliday KJ (Blackwell, Oxford), pp 128-154.
-
(2007)
Light and Plant Development
, pp. 128-154
-
-
Feng, S.1
Deng, X.W.2
-
30
-
-
0031608912
-
Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development
-
Ang LH, et al. (1998) Molecular interaction between COP1 and HY5 defines a regulatory switch for light control of Arabidopsis development. Mol Cell 1:213-222.
-
(1998)
Mol Cell
, vol.1
, pp. 213-222
-
-
Ang, L.H.1
-
31
-
-
0347052754
-
Overexpression of a mutant basic helix-loop-helix protein HFR1, HFR1-deltaN105, activates a branch pathway of light signaling in Arabidopsis
-
Yang KY, Kim YM, Lee S, Song PS, Soh MS (2003) Overexpression of a mutant basic helix-loop-helix protein HFR1, HFR1-deltaN105, activates a branch pathway of light signaling in Arabidopsis. Plant Physiol 133:1630-1642.
-
(2003)
Plant Physiol
, vol.133
, pp. 1630-1642
-
-
Yang, K.Y.1
Kim, Y.M.2
Lee, S.3
Song, P.S.4
Soh, M.S.5
-
32
-
-
57649111948
-
Light-induced phosphorylation and degradation of the negative regulator phytochrome-interacting factor1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes
-
Shen H, etal. (2008) Light-induced phosphorylation and degradation of the negative regulator phytochrome-interacting factor1 from Arabidopsis depend upon its direct physical interactions with photoactivated phytochromes. Plant Cell 20:1586-1602.
-
(2008)
Plant Cell
, vol.20
, pp. 1586-1602
-
-
Shen, H.1
-
33
-
-
33644872577
-
-
eds Gentlemen R, Carey V, Dudoit S, Irizarry R, Huber W Springer, New York, pp
-
Smyth GK (2005) in Bioinformaticsand Computational BiologySolutions Using Rand Bioconductor, eds Gentlemen R, Carey V, Dudoit S, Irizarry R, Huber W (Springer, New York), pp 397-420.
-
(2005)
Bioinformaticsand Computational BiologySolutions Using Rand Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
|