메뉴 건너뛰기




Volumn 65, Issue 4, 2011, Pages 634-646

A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana

Author keywords

brassinosteroid; ChIP chip; gene regulatory network; microarray; plant hormone; transcription factors

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA; BRASSINOSTEROIDS; CELLULAR NETWORK; CHIP-CHIP; CHLOROPLAST DEVELOPMENT; CHROMATIN IMMUNOPRECIPITATION; COMPUTATIONAL MODELING; GENE EXPRESSION DATA; GENE REGULATORY NETWORK; GENE REGULATORY NETWORKS; GLOBAL VIEW; PLANT GROWTH; PLANT HORMONE; SIGNALING PATHWAYS; TARGET GENES; TILING ARRAY; TRANSCRIPTIONAL FACTORS; TRANSCRIPTIONAL NETWORKS;

EID: 79551652213     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2010.04449.x     Document Type: Article
Times cited : (520)

References (83)
  • 1
    • 0042768158 scopus 로고    scopus 로고
    • Genome-wide insertional mutagenesis of Arabidopsis thaliana
    • et al.
    • Alonso, J.M., Stepanova, A.N., Leisse, T.J., et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science, 301, 653-657.
    • (2003) Science , vol.301 , pp. 653-657
    • Alonso, J.M.1    Stepanova, A.N.2    Leisse, T.J.3
  • 3
    • 33847263536 scopus 로고    scopus 로고
    • Supervised detection of conserved motifs in DNA sequences with cosmo
    • Article8.
    • Bembom, O., Keles, S., and, van der Laan, M.J., (2007) Supervised detection of conserved motifs in DNA sequences with cosmo. Stat. Appl. Genet. Mol. Biol. 6. Article8.
    • (2007) Stat. Appl. Genet. Mol. Biol. , vol.6
    • Bembom, O.1    Keles, S.2    Van Der Laan, M.J.3
  • 4
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: A practical and powerful approach to multiple testing
    • Benjamini, Y., and, Hochberg, Y., (1995) Controlling the false discovery rate: a practical and powerful approach to multiple testing. J. Roy. Statist. Soc. Ser. B, 57, 289-300.
    • (1995) J. Roy. Statist. Soc. Ser. B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 5
    • 25144525014 scopus 로고    scopus 로고
    • Core transcriptional regulatory circuitry in human embryonic stem cells
    • et al.
    • Boyer, L.A., Lee, T.I., Cole, M.F., et al. (2005) Core transcriptional regulatory circuitry in human embryonic stem cells. Cell, 122, 947-956.
    • (2005) Cell , vol.122 , pp. 947-956
    • Boyer, L.A.1    Lee, T.I.2    Cole, M.F.3
  • 6
    • 55649109792 scopus 로고    scopus 로고
    • The plastoglobule: A bag full of lipid biochemistry tricks
    • Brehelin, C., and, Kessler, F., (2008) The plastoglobule: a bag full of lipid biochemistry tricks. Photochem. Photobiol. 84, 1388-1394.
    • (2008) Photochem. Photobiol. , vol.84 , pp. 1388-1394
    • Brehelin, C.1    Kessler, F.2
  • 7
    • 33750442923 scopus 로고    scopus 로고
    • Genome-wide analysis of estrogen receptor binding sites
    • et al.
    • Carroll, J.S., Meyer, C.A., Song, J., et al. (2006) Genome-wide analysis of estrogen receptor binding sites. Nat. Genet. 38, 1289-1297.
    • (2006) Nat. Genet. , vol.38 , pp. 1289-1297
    • Carroll, J.S.1    Meyer, C.A.2    Song, J.3
  • 8
    • 0036852939 scopus 로고    scopus 로고
    • Arabidopsis brassinosteroid-insensitive dwarf12 mutants are semidominant and defective in a glycogen synthase kinase 3beta-like kinase
    • Choe, S., Schmitz, R.J., Fujioka, S., Takatsuto, S., Lee, M.O., Yoshida, S., Feldmann, K.A., and, Tax, F.E., (2002) Arabidopsis brassinosteroid- insensitive dwarf12 mutants are semidominant and defective in a glycogen synthase kinase 3beta-like kinase. Plant Physiol. 130, 1506-1515.
    • (2002) Plant Physiol. , vol.130 , pp. 1506-1515
    • Choe, S.1    Schmitz, R.J.2    Fujioka, S.3    Takatsuto, S.4    Lee, M.O.5    Yoshida, S.6    Feldmann, K.A.7    Tax, F.E.8
  • 9
    • 0000849713 scopus 로고
    • Phenotypic and genetic analysis of det2, a new mutant that affects light regulated seedling development in Arabidopsis
    • Chory, J., Nagpal, P., and, Peto, C.A., (1991) Phenotypic and genetic analysis of det2, a new mutant that affects light regulated seedling development in Arabidopsis. Plant Cell, 3, 445-459.
    • (1991) Plant Cell , vol.3 , pp. 445-459
    • Chory, J.1    Nagpal, P.2    Peto, C.A.3
  • 10
    • 0031793484 scopus 로고    scopus 로고
    • Brassinosteroids: Essential regulators of plant growth and development
    • Clouse, S., and, Sasse, J., (1998) Brassinosteroids: essential regulators of plant growth and development. Annu. Rev. Plant Physiol. Plant Mol. Biol. 49, 427-451.
    • (1998) Annu. Rev. Plant Physiol. Plant Mol. Biol. , vol.49 , pp. 427-451
    • Clouse, S.1    Sasse, J.2
  • 11
    • 0030194927 scopus 로고    scopus 로고
    • A brassinosteroid-insensitive mutant in Arabidopsis thaliana exhibits multiple defects in growth and development
    • Clouse, S.D., Langford, M., and, McMorris, T.C., (1996) A brassinosteroid-insensitive mutant in Arabidopsis thaliana exhibits multiple defects in growth and development. Plant Physiol. 111, 671-678.
    • (1996) Plant Physiol. , vol.111 , pp. 671-678
    • Clouse, S.D.1    Langford, M.2    McMorris, T.C.3
  • 12
    • 22544432861 scopus 로고    scopus 로고
    • Interaction of Arabidopsis BRASSINOSTEROID-INSENSITIVE 1 receptor kinase with a homolog of mammalian TGF-beta receptor interacting protein
    • Ehsan, H., Ray, W.K., Phinney, B., Wang, X., Huber, S.C., and, Clouse, S.D., (2005) Interaction of Arabidopsis BRASSINOSTEROID-INSENSITIVE 1 receptor kinase with a homolog of mammalian TGF-beta receptor interacting protein. Plant J. 43, 251-261.
    • (2005) Plant J. , vol.43 , pp. 251-261
    • Ehsan, H.1    Ray, W.K.2    Phinney, B.3    Wang, X.4    Huber, S.C.5    Clouse, S.D.6
  • 13
    • 33846689706 scopus 로고    scopus 로고
    • Using GOstats to test gene lists for GO term association
    • Falcon, S., and, Gentleman, R., (2007) Using GOstats to test gene lists for GO term association. Bioinformatics, 23, 257-258.
    • (2007) Bioinformatics , vol.23 , pp. 257-258
    • Falcon, S.1    Gentleman, R.2
  • 14
    • 0036742107 scopus 로고    scopus 로고
    • GLK gene pairs regulate chloroplast development in diverse plant species
    • Fitter, D.W., Martin, D.J., Copley, M.J., Scotland, R.W., and, Langdale, J.A., (2002) GLK gene pairs regulate chloroplast development in diverse plant species. Plant J. 31, 713-727.
    • (2002) Plant J. , vol.31 , pp. 713-727
    • Fitter, D.W.1    Martin, D.J.2    Copley, M.J.3    Scotland, R.W.4    Langdale, J.A.5
  • 15
    • 0036859947 scopus 로고    scopus 로고
    • Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth
    • Friedrichsen, D.M., Nemhauser, J., Muramitsu, T., Maloof, J.N., Alonso, J., Ecker, J.R., Furuya, M., and, Chory, J., (2002) Three redundant brassinosteroid early response genes encode putative bHLH transcription factors required for normal growth. Genetics, 162, 1445-1456.
    • (2002) Genetics , vol.162 , pp. 1445-1456
    • Friedrichsen, D.M.1    Nemhauser, J.2    Muramitsu, T.3    Maloof, J.N.4    Alonso, J.5    Ecker, J.R.6    Furuya, M.7    Chory, J.8
  • 16
    • 4644229612 scopus 로고    scopus 로고
    • Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana
    • Fujimori, T., Yamashino, T., Kato, T., and, Mizuno, T., (2004) Circadian-controlled basic/helix-loop-helix factor, PIL6, implicated in light-signal transduction in Arabidopsis thaliana. Plant Cell Physiol. 45, 1078-1086.
    • (2004) Plant Cell Physiol. , vol.45 , pp. 1078-1086
    • Fujimori, T.1    Yamashino, T.2    Kato, T.3    Mizuno, T.4
  • 17
    • 34547395050 scopus 로고    scopus 로고
    • An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis
    • et al.
    • Gampala, S.S., Kim, T.W., He, J.X., et al. (2007) An essential role for 14-3-3 proteins in brassinosteroid signal transduction in Arabidopsis. Dev Cell, 13, 177-189.
    • (2007) Dev Cell , vol.13 , pp. 177-189
    • Gampala, S.S.1    Kim, T.W.2    He, J.X.3
  • 18
    • 0037072666 scopus 로고    scopus 로고
    • Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1
    • Gendrel, A.V., Lippman, Z., Yordan, C., Colot, V., and, Martienssen, R.A., (2002) Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1. Science, 297, 1871-1873.
    • (2002) Science , vol.297 , pp. 1871-1873
    • Gendrel, A.V.1    Lippman, Z.2    Yordan, C.3    Colot, V.4    Martienssen, R.A.5
  • 19
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • et al.
    • Gentleman, R.C., Carey, V.J., Bates, D.M., et al. (2004) Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 5, R80.
    • (2004) Genome Biol. , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 20
    • 1942501811 scopus 로고    scopus 로고
    • Comprehensive comparison of auxin-regulated and brassinosteroid regulated genes in Arabidopsis
    • Goda, H., Sawa, S., Asami, T., Fujioka, S., Shimada, Y., and, Yoshida, S., (2004) Comprehensive comparison of auxin-regulated and brassinosteroid regulated genes in Arabidopsis. Plant Physiol. 134, 1555-1573.
    • (2004) Plant Physiol. , vol.134 , pp. 1555-1573
    • Goda, H.1    Sawa, S.2    Asami, T.3    Fujioka, S.4    Shimada, Y.5    Yoshida, S.6
  • 21
    • 43749122090 scopus 로고    scopus 로고
    • A flexible and powerful bayesian hierarchical model for ChIP-Chip experiments
    • Gottardo, R., Li, W., Johnson, W.E., and, Liu, X.S., (2008) A flexible and powerful bayesian hierarchical model for ChIP-Chip experiments. Biometrics, 64, 468-478.
    • (2008) Biometrics , vol.64 , pp. 468-478
    • Gottardo, R.1    Li, W.2    Johnson, W.E.3    Liu, X.S.4
  • 22
    • 48549103968 scopus 로고    scopus 로고
    • Plastoglobule proteome
    • Grennan, A.K., (2008) Plastoglobule proteome. Plant Physiol. 147, 443-445.
    • (2008) Plant Physiol. , vol.147 , pp. 443-445
    • Grennan, A.K.1
  • 23
    • 66149120717 scopus 로고    scopus 로고
    • Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana
    • Guo, H., Li, L., Ye, H., Yu, X., Algreen, A., and, Yin, Y., (2009) Three related receptor-like kinases are required for optimal cell elongation in Arabidopsis thaliana. Proc. Natl Acad. Sci. USA, 106, 7648-7653.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 7648-7653
    • Guo, H.1    Li, L.2    Ye, H.3    Yu, X.4    Algreen, A.5    Yin, Y.6
  • 24
    • 77953179269 scopus 로고    scopus 로고
    • TCP1 modulates brassinosteroid biosynthesis by regulating the expression of the key biosynthetic gene DWARF4 in Arabidopsis thaliana
    • Guo, Z., Fujioka, S., Blancaflor, E.B., Miao, S., Gou, X., and, Li, J., (2010) TCP1 modulates brassinosteroid biosynthesis by regulating the expression of the key biosynthetic gene DWARF4 in Arabidopsis thaliana. Plant Cell, 22, 1161-1173.
    • (2010) Plant Cell , vol.22 , pp. 1161-1173
    • Guo, Z.1    Fujioka, S.2    Blancaflor, E.B.3    Miao, S.4    Gou, X.5    Li, J.6
  • 25
    • 35848943466 scopus 로고    scopus 로고
    • Transcriptional auxin-brassinosteroid crosstalk: Who's talking?
    • Hardtke, C.S., (2007) Transcriptional auxin-brassinosteroid crosstalk: who's talking? Bioessays, 29, 1115-1123.
    • (2007) Bioessays , vol.29 , pp. 1115-1123
    • Hardtke, C.S.1
  • 26
    • 14844351538 scopus 로고    scopus 로고
    • BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses
    • He, J.X., Gendron, J.M., Sun, Y., Gampala, S.S., Gendron, N., Sun, C.Q., and, Wang, Z.Y., (2005) BZR1 is a transcriptional repressor with dual roles in brassinosteroid homeostasis and growth responses. Science, 307, 1634-1638.
    • (2005) Science , vol.307 , pp. 1634-1638
    • He, J.X.1    Gendron, J.M.2    Sun, Y.3    Gampala, S.S.4    Gendron, N.5    Sun, C.Q.6    Wang, Z.Y.7
  • 28
    • 24644462724 scopus 로고    scopus 로고
    • TileMap: Create chromosomal map of tiling array hybridizations
    • Ji, H., and, Wong, W.H., (2005) TileMap: create chromosomal map of tiling array hybridizations. Bioinformatics, 21, 3629-3636.
    • (2005) Bioinformatics , vol.21 , pp. 3629-3636
    • Ji, H.1    Wong, W.H.2
  • 29
    • 77952507231 scopus 로고    scopus 로고
    • Brassinosteroid signal transduction from receptor kinases to transcription factors
    • Kim, T.W., and, Wang, Z.Y., (2010) Brassinosteroid signal transduction from receptor kinases to transcription factors. Annu. Rev. Plant Biol. 61, 681-704.
    • (2010) Annu. Rev. Plant Biol. , vol.61 , pp. 681-704
    • Kim, T.W.1    Wang, Z.Y.2
  • 30
    • 70349652000 scopus 로고    scopus 로고
    • Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors
    • Kim, T.W., Guan, S., Sun, Y., Deng, Z., Tang, W., Shang, J.X., Burlingame, A.L., and, Wang, Z.Y., (2009) Brassinosteroid signal transduction from cell-surface receptor kinases to nuclear transcription factors. Nat. Cell Biol. 11, 1254-1260.
    • (2009) Nat. Cell Biol. , vol.11 , pp. 1254-1260
    • Kim, T.W.1    Guan, S.2    Sun, Y.3    Deng, Z.4    Tang, W.5    Shang, J.X.6    Burlingame, A.L.7    Wang, Z.Y.8
  • 31
    • 12744273399 scopus 로고    scopus 로고
    • Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1
    • Kinoshita, T., Caño-Delgado, A., Seto, H., Hiranuma, S., Fujioka, S., Yoshida, S., and, Chory, J., (2005) Binding of brassinosteroids to the extracellular domain of plant receptor kinase BRI1. Nature, 433, 167-171.
    • (2005) Nature , vol.433 , pp. 167-171
    • Kinoshita, T.1    Caño-Delgado, A.2    Seto, H.3    Hiranuma, S.4    Fujioka, S.5    Yoshida, S.6    Chory, J.7
  • 32
    • 75749104141 scopus 로고    scopus 로고
    • The chloroplast protein BPG2 functions in brassinosteroid-mediated post-transcriptional accumulation of chloroplast rRNA
    • et al.
    • Komatsu, T., Kawaide, H., Saito, C., et al. (2009) The chloroplast protein BPG2 functions in brassinosteroid-mediated post-transcriptional accumulation of chloroplast rRNA. Plant J. 61, 409-422.
    • (2009) Plant J. , vol.61 , pp. 409-422
    • Komatsu, T.1    Kawaide, H.2    Saito, C.3
  • 33
    • 34250780751 scopus 로고    scopus 로고
    • Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development
    • Lee, J., He, K., Stolc, V., Lee, H., Figueroa, P., Gao, Y., Tongprasit, W., Zhao, H., Lee, I., and, Deng, X.W., (2007) Analysis of transcription factor HY5 genomic binding sites revealed its hierarchical role in light regulation of development. Plant Cell, 19, 731-749.
    • (2007) Plant Cell , vol.19 , pp. 731-749
    • Lee, J.1    He, K.2    Stolc, V.3    Lee, H.4    Figueroa, P.5    Gao, Y.6    Tongprasit, W.7    Zhao, H.8    Lee, I.9    Deng, X.W.10
  • 34
    • 78049320716 scopus 로고    scopus 로고
    • Regulation of the nuclear activities of brassinosteroid signaling
    • Li, J., (2010) Regulation of the nuclear activities of brassinosteroid signaling. Curr. Opin. Plant Biol. 13, 540-547.
    • (2010) Curr. Opin. Plant Biol. , vol.13 , pp. 540-547
    • Li, J.1
  • 35
    • 0030866902 scopus 로고    scopus 로고
    • A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction
    • Li, J., and, Chory, J., (1997) A putative leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. Cell, 90, 929-938.
    • (1997) Cell , vol.90 , pp. 929-938
    • Li, J.1    Chory, J.2
  • 36
    • 0037083609 scopus 로고    scopus 로고
    • Regulation of brassinosteroid signaling by a GSK3/SHAGGY-like kinase
    • Li, J., and, Nam, K.H., (2002) Regulation of brassinosteroid signaling by a GSK3/SHAGGY-like kinase. Science, 295, 1299-1301.
    • (2002) Science , vol.295 , pp. 1299-1301
    • Li, J.1    Nam, K.H.2
  • 37
    • 0037178776 scopus 로고    scopus 로고
    • BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling
    • Li, J., Wen, J., Lease, K.A., Doke, J.T., Tax, F.E., and, Walker, J.C., (2002) BAK1, an Arabidopsis LRR receptor-like protein kinase, interacts with BRI1 and modulates brassinosteroid signaling. Cell, 110, 213-222.
    • (2002) Cell , vol.110 , pp. 213-222
    • Li, J.1    Wen, J.2    Lease, K.A.3    Doke, J.T.4    Tax, F.E.5    Walker, J.C.6
  • 38
    • 64249118768 scopus 로고    scopus 로고
    • Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression
    • Li, L., Yu, X., Thompson, A., Guo, M., Yoshida, S., Asami, T., Chory, J., and, Yin, Y., (2009) Arabidopsis MYB30 is a direct target of BES1 and cooperates with BES1 to regulate brassinosteroid-induced gene expression. Plant J. 58, 275-286.
    • (2009) Plant J. , vol.58 , pp. 275-286
    • Li, L.1    Yu, X.2    Thompson, A.3    Guo, M.4    Yoshida, S.5    Asami, T.6    Chory, J.7    Yin, Y.8
  • 39
    • 77649247669 scopus 로고    scopus 로고
    • Arabidopsis IWS1 interacts with transcription factor BES1 and is involved in plant steroid hormone brassinosteroid regulated gene expression
    • Li, L., Ye, H., Guo, H., and, Yin, Y., (2010) Arabidopsis IWS1 interacts with transcription factor BES1 and is involved in plant steroid hormone brassinosteroid regulated gene expression. Proc. Natl Acad. Sci. USA, 107, 3918-3923.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 3918-3923
    • Li, L.1    Ye, H.2    Guo, H.3    Yin, Y.4
  • 40
    • 77957068711 scopus 로고
    • Chlorophylls and carotenoids: Pigments of photosynthesis biomembranes
    • Lichtenthaler, H.K., (1987) Chlorophylls and carotenoids: pigments of photosynthesis biomembranes. Meth. Enz. 148, 350-382.
    • (1987) Meth. Enz. , vol.148 , pp. 350-382
    • Lichtenthaler, H.K.1
  • 42
    • 0034194473 scopus 로고    scopus 로고
    • CIITA is a transcriptional coactivator that is recruited to MHC class II promoters by multiple synergistic interactions with an enhanceosome complex
    • Masternak, K., Muhlethaler-Mottet, A., Villard, J., Zufferey, M., Steimle, V., and, Reith, W., (2000) CIITA is a transcriptional coactivator that is recruited to MHC class II promoters by multiple synergistic interactions with an enhanceosome complex. Genes Dev. 14, 1156-1166.
    • (2000) Genes Dev. , vol.14 , pp. 1156-1166
    • Masternak, K.1    Muhlethaler-Mottet, A.2    Villard, J.3    Zufferey, M.4    Steimle, V.5    Reith, W.6
  • 43
    • 40949128823 scopus 로고    scopus 로고
    • Genome-wide analysis of the homeobox C6 transcriptional network in prostate cancer
    • McCabe, C.D., Spyropoulos, D.D., Martin, D., and, Moreno, C.S., (2008) Genome-wide analysis of the homeobox C6 transcriptional network in prostate cancer. Cancer Res. 68, 1988-1996.
    • (2008) Cancer Res. , vol.68 , pp. 1988-1996
    • McCabe, C.D.1    Spyropoulos, D.D.2    Martin, D.3    Moreno, C.S.4
  • 45
    • 43149122898 scopus 로고    scopus 로고
    • Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells
    • Minsky, N., Shema, E., Field, Y., Schuster, M., Segal, E., and, Oren, M., (2008) Monoubiquitinated H2B is associated with the transcribed region of highly expressed genes in human cells. Nat. Cell Biol. 10, 483-488.
    • (2008) Nat. Cell Biol. , vol.10 , pp. 483-488
    • Minsky, N.1    Shema, E.2    Field, Y.3    Schuster, M.4    Segal, E.5    Oren, M.6
  • 46
    • 0032698635 scopus 로고    scopus 로고
    • Interactions and intersections of plant signaling pathways
    • Moller, S.G., and, Chua, N.H., (1999) Interactions and intersections of plant signaling pathways. J. Mol. Biol. 293, 219-234.
    • (1999) J. Mol. Biol. , vol.293 , pp. 219-234
    • Moller, S.G.1    Chua, N.H.2
  • 47
    • 1542373671 scopus 로고    scopus 로고
    • Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis
    • Mora-Garcia, S., Vert, G., Yin, Y., Cano-Delgado, A., Cheong, H., and, Chory, J., (2004) Nuclear protein phosphatases with Kelch-repeat domains modulate the response to brassinosteroids in Arabidopsis. Genes Dev. 18, 448-460.
    • (2004) Genes Dev. , vol.18 , pp. 448-460
    • Mora-Garcia, S.1    Vert, G.2    Yin, Y.3    Cano-Delgado, A.4    Cheong, H.5    Chory, J.6
  • 49
    • 0037178782 scopus 로고    scopus 로고
    • BRI1/BAK1, a receptor kinase pair mediating brassinosteroid signaling
    • Nam, K.H., and, Li, J., (2002) BRI1/BAK1, a receptor kinase pair mediating brassinosteroid signaling. Cell, 110, 203-212.
    • (2002) Cell , vol.110 , pp. 203-212
    • Nam, K.H.1    Li, J.2
  • 50
    • 4544236639 scopus 로고    scopus 로고
    • The Arabidopsis transthyretin-like protein is a potential substrate of BRASSINOSTEROID-INSENSITIVE 1
    • Nam, K.H., and, Li, J., (2004) The Arabidopsis transthyretin-like protein is a potential substrate of BRASSINOSTEROID-INSENSITIVE 1. Plant Cell, 16, 2406-2417.
    • (2004) Plant Cell , vol.16 , pp. 2406-2417
    • Nam, K.H.1    Li, J.2
  • 52
    • 19344363731 scopus 로고    scopus 로고
    • Interdependency of brassinosteroid and auxin signaling in Arabidopsis
    • Nemhauser, J.L., Mockler, T.C., and, Chory, J., (2004) Interdependency of brassinosteroid and auxin signaling in Arabidopsis. PLoS Biol. 2, E258.
    • (2004) PLoS Biol. , vol.2
    • Nemhauser, J.L.1    Mockler, T.C.2    Chory, J.3
  • 53
    • 64749089220 scopus 로고    scopus 로고
    • Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis
    • Oh, E., Kang, H., Yamaguchi, S., Park, J., Lee, D., Kamiya, Y., and, Choi, G., (2009a) Genome-wide analysis of genes targeted by PHYTOCHROME INTERACTING FACTOR 3-LIKE5 during seed germination in Arabidopsis. Plant Cell, 21, 403-419.
    • (2009) Plant Cell , vol.21 , pp. 403-419
    • Oh, E.1    Kang, H.2    Yamaguchi, S.3    Park, J.4    Lee, D.5    Kamiya, Y.6    Choi, G.7
  • 54
    • 58849127342 scopus 로고    scopus 로고
    • Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis
    • Oh, M.H., Wang, X., Kota, U., Goshe, M.B., Clouse, S.D., and, Huber, S.C., (2009b) Tyrosine phosphorylation of the BRI1 receptor kinase emerges as a component of brassinosteroid signaling in Arabidopsis. Proc. Natl Acad. Sci. USA, 106, 658-663.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 658-663
    • Oh, M.H.1    Wang, X.2    Kota, U.3    Goshe, M.B.4    Clouse, S.D.5    Huber, S.C.6
  • 55
    • 34250891702 scopus 로고    scopus 로고
    • Genome-wide studies of histone demethylation catalysed by the fission yeast homologues of mammalian LSD1
    • et al.
    • Opel, M., Lando, D., Bonilla, C., et al. (2007) Genome-wide studies of histone demethylation catalysed by the fission yeast homologues of mammalian LSD1. PLoS ONE, 2, e386.
    • (2007) PLoS ONE , vol.2
    • Opel, M.1    Lando, D.2    Bonilla, C.3
  • 56
    • 16344379189 scopus 로고    scopus 로고
    • The PIN auxin efflux facilitators: Evolutionary and functional perspectives
    • Paponov, I.A., Teale, W.D., Trebar, M., Blilou, I., and, Palme, K., (2005) The PIN auxin efflux facilitators: evolutionary and functional perspectives. Trends Plant Sci. 10, 170-177.
    • (2005) Trends Plant Sci. , vol.10 , pp. 170-177
    • Paponov, I.A.1    Teale, W.D.2    Trebar, M.3    Blilou, I.4    Palme, K.5
  • 57
    • 77955293464 scopus 로고    scopus 로고
    • A direct docking mechanism for a plant GSK3-like kinase to phosphorylate its substrates
    • Peng, P., Zhao, J., Zhu, Y., Asami, T., and, Li, J., (2010) A direct docking mechanism for a plant GSK3-like kinase to phosphorylate its substrates. J. Biol. Chem. 285, 24646-24653.
    • (2010) J. Biol. Chem. , vol.285 , pp. 24646-24653
    • Peng, P.1    Zhao, J.2    Zhu, Y.3    Asami, T.4    Li, J.5
  • 58
    • 0037083536 scopus 로고    scopus 로고
    • The UCU1 Arabidopsis gene encodes a SHAGGY/GSK3-like kinase required for cell expansion along the proximodistal axis
    • Pérez-Pérez, J.M., Ponce, M.R., and, Micol, J.L., (2002) The UCU1 Arabidopsis gene encodes a SHAGGY/GSK3-like kinase required for cell expansion along the proximodistal axis. Dev. Biol. 242, 161-173.
    • (2002) Dev. Biol. , vol.242 , pp. 161-173
    • Pérez-Pérez, J.M.1    Ponce, M.R.2    Micol, J.L.3
  • 59
    • 35748933556 scopus 로고    scopus 로고
    • Nucleocytoplasmic shuttling of BZR1 mediated by phosphorylation is essential in Arabidopsis brassinosteroid signaling
    • Ryu, H., Kim, K., Cho, H., Park, J., Choe, S., and, Hwang, I., (2007) Nucleocytoplasmic shuttling of BZR1 mediated by phosphorylation is essential in Arabidopsis brassinosteroid signaling. Plant Cell, 19, 2749-2762.
    • (2007) Plant Cell , vol.19 , pp. 2749-2762
    • Ryu, H.1    Kim, K.2    Cho, H.3    Park, J.4    Choe, S.5    Hwang, I.6
  • 60
    • 77953520255 scopus 로고    scopus 로고
    • Phosphorylation dependent nucleocytoplasmic shuttling of BES1 is a key regulatory event in brassinosteroid signaling
    • Ryu, H., Cho, H., Kim, K., and, Hwang, I., (2010a) Phosphorylation dependent nucleocytoplasmic shuttling of BES1 is a key regulatory event in brassinosteroid signaling. Mol. Cells, 29, 283-290.
    • (2010) Mol. Cells , vol.29 , pp. 283-290
    • Ryu, H.1    Cho, H.2    Kim, K.3    Hwang, I.4
  • 61
    • 77953494851 scopus 로고    scopus 로고
    • Predominant actions of cytosolic BSU1 and nuclear BIN2 regulate subcellular localization of BES1 in brassinosteroid signaling
    • Ryu, H., Kim, K., Cho, H., and, Hwang, I., (2010b) Predominant actions of cytosolic BSU1 and nuclear BIN2 regulate subcellular localization of BES1 in brassinosteroid signaling. Mol. Cells, 29, 291-296.
    • (2010) Mol. Cells , vol.29 , pp. 291-296
    • Ryu, H.1    Kim, K.2    Cho, H.3    Hwang, I.4
  • 62
    • 33847271755 scopus 로고    scopus 로고
    • A core transcriptional network for early mesoderm development in Drosophila melanogaster
    • Sandmann, T., Girardot, C., Brehme, M., Tongprasit, W., Stolc, V., and, Furlong, E.E., (2007) A core transcriptional network for early mesoderm development in Drosophila melanogaster. Genes Dev. 21, 436-449.
    • (2007) Genes Dev. , vol.21 , pp. 436-449
    • Sandmann, T.1    Girardot, C.2    Brehme, M.3    Tongprasit, W.4    Stolc, V.5    Furlong, E.E.6
  • 63
    • 65149083962 scopus 로고    scopus 로고
    • The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line
    • et al.
    • Suzuki, H., Forrest, A.R., van Nimwegen, E., et al. (2009) The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line. Nat. Genet. 41, 553-562.
    • (2009) Nat. Genet. , vol.41 , pp. 553-562
    • Suzuki, H.1    Forrest, A.R.2    Van Nimwegen, E.3
  • 65
    • 33646908809 scopus 로고    scopus 로고
    • Downstream nuclear events in brassinosteroid signalling
    • Vert, G., and, Chory, J., (2006) Downstream nuclear events in brassinosteroid signalling. Nature, 441, 96-100.
    • (2006) Nature , vol.441 , pp. 96-100
    • Vert, G.1    Chory, J.2
  • 66
    • 0035869056 scopus 로고    scopus 로고
    • BRI1 is a critical component of a plasma-membrane receptor for plant steroids
    • Wang, Z.Y., Seto, H., Fujioka, S., Yoshida, S., and, Chory, J., (2001) BRI1 is a critical component of a plasma-membrane receptor for plant steroids. Nature, 410, 380-383.
    • (2001) Nature , vol.410 , pp. 380-383
    • Wang, Z.Y.1    Seto, H.2    Fujioka, S.3    Yoshida, S.4    Chory, J.5
  • 67
    • 18344371419 scopus 로고    scopus 로고
    • Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis
    • et al.
    • Wang, Z.Y., Nakano, T., Gendron, J., et al. (2002) Nuclear-localized BZR1 mediates brassinosteroid-induced growth and feedback suppression of brassinosteroid biosynthesis. Dev. Cell, 2, 505-513.
    • (2002) Dev. Cell , vol.2 , pp. 505-513
    • Wang, Z.Y.1    Nakano, T.2    Gendron, J.3
  • 68
    • 23944457745 scopus 로고    scopus 로고
    • Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase
    • Wang, X., Goshe, M.B., Soderblom, E.J., Phinney, B.S., Kuchar, J.A., Li, J., Asami, T., Yoshida, S., Huber, S.C., and, Clouse, S.D., (2005a) Identification and functional analysis of in vivo phosphorylation sites of the Arabidopsis BRASSINOSTEROID-INSENSITIVE1 receptor kinase. Plant Cell, 17, 1685-1703.
    • (2005) Plant Cell , vol.17 , pp. 1685-1703
    • Wang, X.1    Goshe, M.B.2    Soderblom, E.J.3    Phinney, B.S.4    Kuchar, J.A.5    Li, J.6    Asami, T.7    Yoshida, S.8    Huber, S.C.9    Clouse, S.D.10
  • 69
    • 19944374806 scopus 로고    scopus 로고
    • Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1
    • Wang, X., Li, X., Meisenhelder, J., Hunter, T., Yoshida, S., Asami, T., and, Chory, J., (2005b) Autoregulation and homodimerization are involved in the activation of the plant steroid receptor BRI1. Dev. Cell, 8, 855-865.
    • (2005) Dev. Cell , vol.8 , pp. 855-865
    • Wang, X.1    Li, X.2    Meisenhelder, J.3    Hunter, T.4    Yoshida, S.5    Asami, T.6    Chory, J.7
  • 70
    • 33750016109 scopus 로고    scopus 로고
    • Inferring gene regulatory networks from multiple microarray datasets
    • Wang, Y., Joshi, T., Zhang, X.S., Xu, D., and, Chen, L., (2006) Inferring gene regulatory networks from multiple microarray datasets. Bioinformatics, 22, 2413-2420.
    • (2006) Bioinformatics , vol.22 , pp. 2413-2420
    • Wang, Y.1    Joshi, T.2    Zhang, X.S.3    Xu, D.4    Chen, L.5
  • 71
    • 48549096822 scopus 로고    scopus 로고
    • Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling
    • Wang, X., Kota, U., He, K., Blackburn, K., Li, J., Goshe, M.B., Huber, S.C., and, Clouse, S.D., (2008) Sequential transphosphorylation of the BRI1/BAK1 receptor kinase complex impacts early events in brassinosteroid signaling. Dev. Cell, 15, 220-235.
    • (2008) Dev. Cell , vol.15 , pp. 220-235
    • Wang, X.1    Kota, U.2    He, K.3    Blackburn, K.4    Li, J.5    Goshe, M.B.6    Huber, S.C.7    Clouse, S.D.8
  • 72
    • 75649084550 scopus 로고    scopus 로고
    • Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins
    • Wang, H., Zhu, Y., Fujioka, S., Asami, T., and, Li, J., (2009) Regulation of Arabidopsis brassinosteroid signaling by atypical basic helix-loop-helix proteins. Plant Cell, 21, 3781-3791.
    • (2009) Plant Cell , vol.21 , pp. 3781-3791
    • Wang, H.1    Zhu, Y.2    Fujioka, S.3    Asami, T.4    Li, J.5
  • 73
    • 54349113094 scopus 로고    scopus 로고
    • GLK transcription factors regulate chloroplast development in a cell-autonomous manner
    • Waters, M.T., Moylan, E.C., and, Langdale, J.A., (2008) GLK transcription factors regulate chloroplast development in a cell-autonomous manner. Plant J. 56, 432-444.
    • (2008) Plant J. , vol.56 , pp. 432-444
    • Waters, M.T.1    Moylan, E.C.2    Langdale, J.A.3
  • 74
    • 66149173501 scopus 로고    scopus 로고
    • GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis
    • Waters, M.T., Wang, P., Korkaric, M., Capper, R.G., Saunders, N.J., and, Langdale, J.A., (2009) GLK transcription factors coordinate expression of the photosynthetic apparatus in Arabidopsis. Plant Cell, 21, 1109-1128.
    • (2009) Plant Cell , vol.21 , pp. 1109-1128
    • Waters, M.T.1    Wang, P.2    Korkaric, M.3    Capper, R.G.4    Saunders, N.J.5    Langdale, J.A.6
  • 75
    • 77956814611 scopus 로고    scopus 로고
    • Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes
    • Xie, Z., Lee, E., Lucas, J.R., Morohashi, K., Li, D., Murray, J.A., Sack, F.D., and, Grotewold, E., (2010) Regulation of cell proliferation in the stomatal lineage by the Arabidopsis MYB FOUR LIPS via direct targeting of core cell cycle genes. Plant Cell, 22, 2306-2321.
    • (2010) Plant Cell , vol.22 , pp. 2306-2321
    • Xie, Z.1    Lee, E.2    Lucas, J.R.3    Morohashi, K.4    Li, D.5    Murray, J.A.6    Sack, F.D.7    Grotewold, E.8
  • 76
    • 0037133960 scopus 로고    scopus 로고
    • BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation
    • Yin, Y., Wang, Z.Y., Mora-Garcia, S., Li, J., Yoshida, S., Asami, T., and, Chory, J., (2002) BES1 accumulates in the nucleus in response to brassinosteroids to regulate gene expression and promote stem elongation. Cell, 109, 181-191.
    • (2002) Cell , vol.109 , pp. 181-191
    • Yin, Y.1    Wang, Z.Y.2    Mora-Garcia, S.3    Li, J.4    Yoshida, S.5    Asami, T.6    Chory, J.7
  • 77
    • 12944297734 scopus 로고    scopus 로고
    • A new class of transcription factors mediate brassinosteroid-regulated gene expression in Arabidopsis
    • Yin, Y., Vafeados, D., Tao, Y., Yokoda, T., Asami, T., and, Chory, J., (2005) A new class of transcription factors mediate brassinosteroid-regulated gene expression in Arabidopsis. Cell, 120, 249-259.
    • (2005) Cell , vol.120 , pp. 249-259
    • Yin, Y.1    Vafeados, D.2    Tao, Y.3    Yokoda, T.4    Asami, T.5    Chory, J.6
  • 78
    • 44949220180 scopus 로고    scopus 로고
    • Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis
    • Yu, X., Li, L., Guo, M., Chory, J., and, Yin, Y., (2008) Modulation of brassinosteroid-regulated gene expression by Jumonji domain-containing proteins ELF6 and REF6 in Arabidopsis. Proc. Natl Acad. Sci. USA, 105, 7618-7623.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 7618-7623
    • Yu, X.1    Li, L.2    Guo, M.3    Chory, J.4    Yin, Y.5
  • 79
    • 33748629119 scopus 로고    scopus 로고
    • Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis
    • et al.
    • Zhang, X., Yazaki, J., Sundaresan, A., et al. (2006) Genome-wide high-resolution mapping and functional analysis of DNA methylation in Arabidopsis. Cell, 126, 1189-1201.
    • (2006) Cell , vol.126 , pp. 1189-1201
    • Zhang, X.1    Yazaki, J.2    Sundaresan, A.3
  • 81
    • 75649123441 scopus 로고    scopus 로고
    • Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis
    • et al.
    • Zhang, L.Y., Bai, M.Y., Wu, J., et al. (2009) Antagonistic HLH/bHLH transcription factors mediate brassinosteroid regulation of cell elongation and plant development in rice and Arabidopsis. Plant Cell, 21, 3767-3780.
    • (2009) Plant Cell , vol.21 , pp. 3767-3780
    • Zhang, L.Y.1    Bai, M.Y.2    Wu, J.3
  • 82
    • 0036851211 scopus 로고    scopus 로고
    • Two putative BIN2 substrates are nuclear components of brassinosteroid signaling
    • Zhao, J., Peng, P., Schmitz, R.J., Decker, A.D., Tax, F.E., and, Li, J., (2002) Two putative BIN2 substrates are nuclear components of brassinosteroid signaling. Plant Physiol. 130, 1221-1229.
    • (2002) Plant Physiol. , vol.130 , pp. 1221-1229
    • Zhao, J.1    Peng, P.2    Schmitz, R.J.3    Decker, A.D.4    Tax, F.E.5    Li, J.6
  • 83
    • 70849092086 scopus 로고    scopus 로고
    • Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15
    • Zheng, Y., Ren, N., Wang, H., Stromberg, A.J., and, Perry, S.E., (2009) Global identification of targets of the Arabidopsis MADS domain protein AGAMOUS-Like15. Plant Cell, 21, 2563-2577.
    • (2009) Plant Cell , vol.21 , pp. 2563-2577
    • Zheng, Y.1    Ren, N.2    Wang, H.3    Stromberg, A.J.4    Perry, S.E.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.