-
1
-
-
84949130891
-
Rewiring makes the difference
-
Califano, A. Rewiring makes the difference. Mol Syst Biol 7, 463 (2011).
-
(2011)
Mol Syst Biol
, vol.7
, pp. 463
-
-
Califano, A.1
-
2
-
-
80053446196
-
Protein networks as logic functions in development and cancer
-
Dutkowski, J.&Ideker, T. Protein networks as logic functions in development and cancer. PLoS Comput Biol 7, e1002180 (2011).
-
(2011)
PLoS Comput Biol
, vol.7
, pp. e1002180
-
-
Dutkowski, J.1
Ideker, T.2
-
3
-
-
84866122803
-
Navigating cancer network attractors for tumor-specific therapy
-
Creixell, P., Schoof, E. M., Erler, J. T. & Linding, R. Navigating cancer network attractors for tumor-specific therapy. Nat Biotechnol 30, 842-8 (2012).
-
(2012)
Nat Biotechnol
, vol.30
, pp. 842-848
-
-
Creixell, P.1
Schoof, E.M.2
Erler, J.T.3
Linding, R.4
-
4
-
-
78649326859
-
Regulation patterns in signaling networks of cancer
-
Schramm, G., Nandakumar, K. & Konig, R. Regulation patterns in signaling networks of cancer. BMC Syst Biol 4, 162 (2010).
-
(2010)
BMC Syst Biol
, vol.4
, pp. 162
-
-
Schramm, G.1
Nandakumar, K.2
Konig, R.3
-
5
-
-
78649703966
-
Rewiring of genetic networks in response to dna damage
-
Bandyopadhyay, S. et al. Rewiring of genetic networks in response to dna damage. Science 330, 1385-1389 (2010).
-
(2010)
Science
, vol.330
, pp. 1385-1389
-
-
Bandyopadhyay, S.1
-
6
-
-
84856094560
-
Differential network biology
-
Ideker, T. & Krogan, N. J. Differential network biology. Mol Syst Biol 8, 565 (2012).
-
(2012)
Mol Syst Biol
, vol.8
, pp. 565
-
-
Ideker, T.1
Krogan, N.J.2
-
7
-
-
84881109934
-
Cancer-related networks: A help to understand, predict and change malignant
-
Csermely, P. & Korcsmaros, T. Cancer-related networks: a help to understand, predict and change malignant. Semin Cancer Biol 23, 209-12 (2013).
-
(2013)
Semin Cancer Biol
, vol.23
, pp. 209-212
-
-
Csermely, P.1
Korcsmaros, T.2
-
8
-
-
84892377561
-
Non-darwinian dynamics in therapy-induced cancer drug resistance
-
Pisco, A. O. et al. Non-darwinian dynamics in therapy-induced cancer drug resistance. Nat Commun 4, 2467 (2013).
-
(2013)
Nat Commun
, vol.4
, pp. 2467
-
-
Pisco, A.O.1
-
9
-
-
84869186030
-
Differential network entropy reveals cancer system hallmarks
-
West, J., Bianconi, G., Severini, S. & Teschendorff, A. E. Differential network entropy reveals cancer system hallmarks. Sci Rep 2, 802 (2012).
-
(2012)
Sci Rep
, vol.2
, pp. 802
-
-
West, J.1
Bianconi, G.2
Severini, S.3
Teschendorff, A.E.4
-
10
-
-
84899740242
-
Cellular network entropy as the energy potential in waddington's differentiation landscape
-
Banerji, C. R. et al. Cellular network entropy as the energy potential in waddington's differentiation landscape. Sci Rep 3, 3039 (2013).
-
(2013)
Sci Rep
, vol.3
, pp. 3039
-
-
Banerji, C.R.1
-
11
-
-
84901439430
-
Signalling entropy: A novel networktheoretical framework for systems analysis and interpretation of functional omic data
-
Teschendorff, A. E., Sollich, P. & Kuehn, R. Signalling entropy: A novel networktheoretical framework for systems analysis and interpretation of functional omic data. Methods 67, 282-93 (2014).
-
(2014)
Methods
, vol.67
, pp. 282-293
-
-
Teschendorff, A.E.1
Sollich, P.2
Kuehn, R.3
-
12
-
-
0001540595
-
On random graphs
-
Erdös, P. & Rényi, A. On random graphs. Pub Math 6, 290-297 (1959).
-
(1959)
Pub Math
, vol.6
, pp. 290-297
-
-
Erdös, P.1
Rényi, A.2
-
13
-
-
0038483826
-
Emergence of scaling in random networks
-
Barabasi, A. L.&Albert, R. Emergence of scaling in random networks. Science 286, 509-512 (1959).
-
(1959)
Science
, vol.286
, pp. 509-512
-
-
Barabasi, A.L.1
Albert, R.2
-
14
-
-
75549085083
-
Human protein reference database and human proteinpedia as discovery tools for systems biology
-
Prasad, T. S., Kandasamy, K. & Pandey, A. Human protein reference database and human proteinpedia as discovery tools for systems biology. Methods Mol Biol 577, 67-79 (2009).
-
(2009)
Methods Mol Biol
, vol.577
, pp. 67-79
-
-
Prasad, T.S.1
Kandasamy, K.2
Pandey, A.3
-
15
-
-
78651332286
-
Pathway commons, a web resource for biological pathway data
-
Cerami, E. G. et al. Pathway commons, a web resource for biological pathway data. Nucleic Acids Res 39, D685-D690 (2011).
-
(2011)
Nucleic Acids Res
, vol.39
, pp. D685-D690
-
-
Cerami, E.G.1
-
16
-
-
84911474471
-
A proteome-scale map of the human interactome network
-
Rolland, T. et al. A proteome-scale map of the human interactome network. Cell 159, 1212-26 (2014).
-
(2014)
Cell
, vol.159
, pp. 1212-1226
-
-
Rolland, T.1
-
17
-
-
0034721164
-
Error and attack tolerance of complex networks
-
Albert, R., Jeong, H. & Barabasi, A. L. Error and attack tolerance of complex networks. Nature 406, 378-382 (2000).
-
(2000)
Nature
, vol.406
, pp. 378-382
-
-
Albert, R.1
Jeong, H.2
Barabasi, A.L.3
-
18
-
-
0035799707
-
Lethality and centrality in protein networks
-
Jeong, H., Mason, S. P., Barabsi, A. L. & Oltvai, Z. N. Lethality and centrality in protein networks. Nature 411, 41-42 (2001).
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabsi, A.L.3
Oltvai, Z.N.4
-
19
-
-
84870944487
-
Cancer develops, progresses and responds to therapies through restricted perturbation of the protein-protein interaction network
-
Serra-Musach, J. et al. Cancer develops, progresses and responds to therapies through restricted perturbation of the protein-protein interaction network. Integr Biol (Camb) 4, 1038-48 (2012).
-
(2012)
Integr Biol (Camb
, vol.4
, pp. 1038-1048
-
-
Serra-Musach, J.1
-
20
-
-
84905455416
-
Robustness and evolvability of the human signaling network
-
Kim, J. et al. Robustness and evolvability of the human signaling network. PLoS Comput Biol 10, e1003763 (2014).
-
(2014)
PLoS Comput Biol
, vol.10
, pp. e1003763
-
-
Kim, J.1
-
21
-
-
84961290751
-
Emergence of disassortative mixing from pruning nodes in growing scale-free networks
-
Wang, S. J., Wang, Z., Jin, T. & Boccaletti, S. Emergence of disassortative mixing from pruning nodes in growing scale-free networks. Sci Rep 4, 7536 (2014).
-
(2014)
Sci Rep
, vol.4
, pp. 7536
-
-
Wang, S.J.1
Wang, Z.2
Jin, T.3
Boccaletti, S.4
-
22
-
-
77955062175
-
Increased entropy of signal transduction in the cancer metastasis phenotype
-
Teschendorff, A. E. & Severini, S. Increased entropy of signal transduction in the cancer metastasis phenotype. BMC Syst Biol 4, 104 (2010).
-
(2010)
BMC Syst Biol
, vol.4
, pp. 104
-
-
Teschendorff, A.E.1
Severini, S.2
-
23
-
-
33748074139
-
Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
-
Haynes, C. et al. Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. PLoS Comput Biol 2, e100 (2006).
-
(2006)
PLoS Comput Biol
, vol.2
, pp. e100
-
-
Haynes, C.1
-
25
-
-
34247549347
-
Genome-wide molecular profiles of hcv-induced dysplasia and hepatocellular carcinoma
-
Wurmbach, E. et al. Genome-wide molecular profiles of hcv-induced dysplasia and hepatocellular carcinoma. Hepatology 45, 938-947 (2007).
-
(2007)
Hepatology
, vol.45
, pp. 938-947
-
-
Wurmbach, E.1
-
26
-
-
0742305866
-
Network biology: Understanding the cell's functional organization
-
Barabasi, A. L. & Oltvai, Z. N. Network biology: understanding the cell's functional organization. Nat Rev Genet 5, 101-113 (2004).
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
27
-
-
3042694117
-
Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
-
Rhodes, D. R. et al. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci U S A 101, 9309-9314 (2004).
-
(2004)
Proc Natl Acad Sci U S A
, vol.101
, pp. 9309-9314
-
-
Rhodes, D.R.1
-
28
-
-
34247217200
-
Hubs inbiological interactionnetworks exhibit low changes in expression in experimental asthma
-
Lu, X., Jain, V. V.,Finn, P.W. & Perkins,D.L.Hubs inbiological interactionnetworks exhibit low changes in expression in experimental asthma. Mol Syst Biol 3, 98 (2007).
-
(2007)
Mol Syst Biol
, vol.3
, pp. 98
-
-
Lu, X.1
Jain, V.V.2
Finn, P.W.3
Perkins, D.L.4
-
29
-
-
34547101963
-
Characterization of proteininteraction networks in tumors
-
Platzer, A., Perco, P., Lukas, A. & Mayer, B. Characterization of proteininteraction networks in tumors. BMC Bioinformatics 8, 224 (2007).
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 224
-
-
Platzer, A.1
Perco, P.2
Lukas, A.3
Mayer, B.4
-
30
-
-
78149296035
-
Patterns of human gene expression variance show strong associations with signaling network hierarchy
-
Komurov, K. & Ram, P. T. Patterns of human gene expression variance show strong associations with signaling network hierarchy.BMCSyst Biol 4, 154 (2010).
-
(2010)
BMCSyst Biol
, vol.4
, pp. 154
-
-
Komurov, K.1
Ram, P.T.2
-
31
-
-
78049437880
-
Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data
-
pii: e1000889
-
Komurov, K., White, M. A. & Ram, P. T. Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data. PLoS Comput Biol 6, pii: e1000889 (2010).
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Komurov, K.1
White, M.A.2
Ram, P.T.3
-
32
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
Jonsson, P. F. & Bates, P. A. Global topological features of cancer proteins in the human interactome. Bioinformatics 22, 2291-2297 (2006).
-
(2006)
Bioinformatics
, vol.22
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
33
-
-
33745656175
-
Characterizing disease states from topological properties of transcriptional regulatory networks
-
Tuck, D. P., Kluger, H. M. & Kluger, Y. Characterizing disease states from topological properties of transcriptional regulatory networks. BMC Bioinformatics 7, 236 (2006).
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 236
-
-
Tuck, D.P.1
Kluger, H.M.2
Kluger, Y.3
-
34
-
-
67049159812
-
A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation
-
Hudson, N. J., Reverter, A. & Dalrymple, B. P. A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation. PLoS Comput Biol 5, e1000382 (2009).
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000382
-
-
Hudson, N.J.1
Reverter, A.2
Dalrymple, B.P.3
-
35
-
-
34548742517
-
Identification of functional modules using network topology and high-throughput data
-
Ulitsky, I. & Shamir, R. Identification of functional modules using network topology and high-throughput data. BMC Syst Biol 1, 8 (2007).
-
(2007)
BMC Syst Biol
, vol.1
, pp. 8
-
-
Ulitsky, I.1
Shamir, R.2
-
36
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
Chuang, H. Y., Lee, E., Liu, Y. T., Lee, D. & Ideker, T. Network-based classification of breast cancer metastasis. Mol Syst Biol 3, 140 (2007).
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
37
-
-
34247622363
-
The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics
-
Yu, H., Kim, P. M., Sprecher, E., Trifonov, V. & Gerstein, M. The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3, e59 (2007).
-
(2007)
PLoS Comput Biol
, vol.3
, pp. e59
-
-
Yu, H.1
Kim, P.M.2
Sprecher, E.3
Trifonov, V.4
Gerstein, M.5
-
38
-
-
84882454737
-
An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways
-
West, J., Beck, S., Wang, X. & Teschendorff, A. E. An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways. Sci Rep 3, 1630 (2013).
-
(2013)
Sci Rep
, vol.3
, pp. 1630
-
-
West, J.1
Beck, S.2
Wang, X.3
Teschendorff, A.E.4
-
39
-
-
77349091815
-
Netpath: A public resource of curated signal transduction pathways
-
Kandasamy, K. et al. Netpath: a public resource of curated signal transduction pathways. Genome Biol 11, R3 (2010).
-
(2010)
Genome Biol
, vol.11
, pp. R3
-
-
Kandasamy, K.1
-
40
-
-
0001320248
-
Kolmogorov-sinai entropy rate versus physical entropy
-
Latora, V. &Baranger, M. Kolmogorov-sinai entropy rate versus physical entropy. Phys Rev Lett 82, 520-524 (1999).
-
(1999)
Phys Rev Lett
, vol.82
, pp. 520-524
-
-
Latora, V.1
Baranger, M.2
-
41
-
-
10444286683
-
Robustness and network evolution-an entropic principle
-
Demetrius, L. & Manke, T. Robustness and network evolution-an entropic principle. Physica A 346, 682-696 (2005).
-
(2005)
Physica A
, vol.346
, pp. 682-696
-
-
Demetrius, L.1
Manke, T.2
|