메뉴 건너뛰기




Volumn 5, Issue , 2015, Pages

Increased signaling entropy in cancer requires the scale-free property of protein interaction networks

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

EID: 84929069926     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep09646     Document Type: Article
Times cited : (44)

References (41)
  • 1
    • 84949130891 scopus 로고    scopus 로고
    • Rewiring makes the difference
    • Califano, A. Rewiring makes the difference. Mol Syst Biol 7, 463 (2011).
    • (2011) Mol Syst Biol , vol.7 , pp. 463
    • Califano, A.1
  • 2
    • 80053446196 scopus 로고    scopus 로고
    • Protein networks as logic functions in development and cancer
    • Dutkowski, J.&Ideker, T. Protein networks as logic functions in development and cancer. PLoS Comput Biol 7, e1002180 (2011).
    • (2011) PLoS Comput Biol , vol.7 , pp. e1002180
    • Dutkowski, J.1    Ideker, T.2
  • 3
    • 84866122803 scopus 로고    scopus 로고
    • Navigating cancer network attractors for tumor-specific therapy
    • Creixell, P., Schoof, E. M., Erler, J. T. & Linding, R. Navigating cancer network attractors for tumor-specific therapy. Nat Biotechnol 30, 842-8 (2012).
    • (2012) Nat Biotechnol , vol.30 , pp. 842-848
    • Creixell, P.1    Schoof, E.M.2    Erler, J.T.3    Linding, R.4
  • 4
    • 78649326859 scopus 로고    scopus 로고
    • Regulation patterns in signaling networks of cancer
    • Schramm, G., Nandakumar, K. & Konig, R. Regulation patterns in signaling networks of cancer. BMC Syst Biol 4, 162 (2010).
    • (2010) BMC Syst Biol , vol.4 , pp. 162
    • Schramm, G.1    Nandakumar, K.2    Konig, R.3
  • 5
    • 78649703966 scopus 로고    scopus 로고
    • Rewiring of genetic networks in response to dna damage
    • Bandyopadhyay, S. et al. Rewiring of genetic networks in response to dna damage. Science 330, 1385-1389 (2010).
    • (2010) Science , vol.330 , pp. 1385-1389
    • Bandyopadhyay, S.1
  • 6
    • 84856094560 scopus 로고    scopus 로고
    • Differential network biology
    • Ideker, T. & Krogan, N. J. Differential network biology. Mol Syst Biol 8, 565 (2012).
    • (2012) Mol Syst Biol , vol.8 , pp. 565
    • Ideker, T.1    Krogan, N.J.2
  • 7
    • 84881109934 scopus 로고    scopus 로고
    • Cancer-related networks: A help to understand, predict and change malignant
    • Csermely, P. & Korcsmaros, T. Cancer-related networks: a help to understand, predict and change malignant. Semin Cancer Biol 23, 209-12 (2013).
    • (2013) Semin Cancer Biol , vol.23 , pp. 209-212
    • Csermely, P.1    Korcsmaros, T.2
  • 8
    • 84892377561 scopus 로고    scopus 로고
    • Non-darwinian dynamics in therapy-induced cancer drug resistance
    • Pisco, A. O. et al. Non-darwinian dynamics in therapy-induced cancer drug resistance. Nat Commun 4, 2467 (2013).
    • (2013) Nat Commun , vol.4 , pp. 2467
    • Pisco, A.O.1
  • 9
    • 84869186030 scopus 로고    scopus 로고
    • Differential network entropy reveals cancer system hallmarks
    • West, J., Bianconi, G., Severini, S. & Teschendorff, A. E. Differential network entropy reveals cancer system hallmarks. Sci Rep 2, 802 (2012).
    • (2012) Sci Rep , vol.2 , pp. 802
    • West, J.1    Bianconi, G.2    Severini, S.3    Teschendorff, A.E.4
  • 10
    • 84899740242 scopus 로고    scopus 로고
    • Cellular network entropy as the energy potential in waddington's differentiation landscape
    • Banerji, C. R. et al. Cellular network entropy as the energy potential in waddington's differentiation landscape. Sci Rep 3, 3039 (2013).
    • (2013) Sci Rep , vol.3 , pp. 3039
    • Banerji, C.R.1
  • 11
    • 84901439430 scopus 로고    scopus 로고
    • Signalling entropy: A novel networktheoretical framework for systems analysis and interpretation of functional omic data
    • Teschendorff, A. E., Sollich, P. & Kuehn, R. Signalling entropy: A novel networktheoretical framework for systems analysis and interpretation of functional omic data. Methods 67, 282-93 (2014).
    • (2014) Methods , vol.67 , pp. 282-293
    • Teschendorff, A.E.1    Sollich, P.2    Kuehn, R.3
  • 12
    • 0001540595 scopus 로고
    • On random graphs
    • Erdös, P. & Rényi, A. On random graphs. Pub Math 6, 290-297 (1959).
    • (1959) Pub Math , vol.6 , pp. 290-297
    • Erdös, P.1    Rényi, A.2
  • 13
    • 0038483826 scopus 로고
    • Emergence of scaling in random networks
    • Barabasi, A. L.&Albert, R. Emergence of scaling in random networks. Science 286, 509-512 (1959).
    • (1959) Science , vol.286 , pp. 509-512
    • Barabasi, A.L.1    Albert, R.2
  • 14
    • 75549085083 scopus 로고    scopus 로고
    • Human protein reference database and human proteinpedia as discovery tools for systems biology
    • Prasad, T. S., Kandasamy, K. & Pandey, A. Human protein reference database and human proteinpedia as discovery tools for systems biology. Methods Mol Biol 577, 67-79 (2009).
    • (2009) Methods Mol Biol , vol.577 , pp. 67-79
    • Prasad, T.S.1    Kandasamy, K.2    Pandey, A.3
  • 15
    • 78651332286 scopus 로고    scopus 로고
    • Pathway commons, a web resource for biological pathway data
    • Cerami, E. G. et al. Pathway commons, a web resource for biological pathway data. Nucleic Acids Res 39, D685-D690 (2011).
    • (2011) Nucleic Acids Res , vol.39 , pp. D685-D690
    • Cerami, E.G.1
  • 16
    • 84911474471 scopus 로고    scopus 로고
    • A proteome-scale map of the human interactome network
    • Rolland, T. et al. A proteome-scale map of the human interactome network. Cell 159, 1212-26 (2014).
    • (2014) Cell , vol.159 , pp. 1212-1226
    • Rolland, T.1
  • 17
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • Albert, R., Jeong, H. & Barabasi, A. L. Error and attack tolerance of complex networks. Nature 406, 378-382 (2000).
    • (2000) Nature , vol.406 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabasi, A.L.3
  • 18
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong, H., Mason, S. P., Barabsi, A. L. & Oltvai, Z. N. Lethality and centrality in protein networks. Nature 411, 41-42 (2001).
    • (2001) Nature , vol.411 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabsi, A.L.3    Oltvai, Z.N.4
  • 19
    • 84870944487 scopus 로고    scopus 로고
    • Cancer develops, progresses and responds to therapies through restricted perturbation of the protein-protein interaction network
    • Serra-Musach, J. et al. Cancer develops, progresses and responds to therapies through restricted perturbation of the protein-protein interaction network. Integr Biol (Camb) 4, 1038-48 (2012).
    • (2012) Integr Biol (Camb , vol.4 , pp. 1038-1048
    • Serra-Musach, J.1
  • 20
    • 84905455416 scopus 로고    scopus 로고
    • Robustness and evolvability of the human signaling network
    • Kim, J. et al. Robustness and evolvability of the human signaling network. PLoS Comput Biol 10, e1003763 (2014).
    • (2014) PLoS Comput Biol , vol.10 , pp. e1003763
    • Kim, J.1
  • 21
    • 84961290751 scopus 로고    scopus 로고
    • Emergence of disassortative mixing from pruning nodes in growing scale-free networks
    • Wang, S. J., Wang, Z., Jin, T. & Boccaletti, S. Emergence of disassortative mixing from pruning nodes in growing scale-free networks. Sci Rep 4, 7536 (2014).
    • (2014) Sci Rep , vol.4 , pp. 7536
    • Wang, S.J.1    Wang, Z.2    Jin, T.3    Boccaletti, S.4
  • 22
    • 77955062175 scopus 로고    scopus 로고
    • Increased entropy of signal transduction in the cancer metastasis phenotype
    • Teschendorff, A. E. & Severini, S. Increased entropy of signal transduction in the cancer metastasis phenotype. BMC Syst Biol 4, 104 (2010).
    • (2010) BMC Syst Biol , vol.4 , pp. 104
    • Teschendorff, A.E.1    Severini, S.2
  • 23
    • 33748074139 scopus 로고    scopus 로고
    • Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes
    • Haynes, C. et al. Intrinsic disorder is a common feature of hub proteins from four eukaryotic interactomes. PLoS Comput Biol 2, e100 (2006).
    • (2006) PLoS Comput Biol , vol.2 , pp. e100
    • Haynes, C.1
  • 25
    • 34247549347 scopus 로고    scopus 로고
    • Genome-wide molecular profiles of hcv-induced dysplasia and hepatocellular carcinoma
    • Wurmbach, E. et al. Genome-wide molecular profiles of hcv-induced dysplasia and hepatocellular carcinoma. Hepatology 45, 938-947 (2007).
    • (2007) Hepatology , vol.45 , pp. 938-947
    • Wurmbach, E.1
  • 26
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • Barabasi, A. L. & Oltvai, Z. N. Network biology: understanding the cell's functional organization. Nat Rev Genet 5, 101-113 (2004).
    • (2004) Nat Rev Genet , vol.5 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 27
    • 3042694117 scopus 로고    scopus 로고
    • Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    • Rhodes, D. R. et al. Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression. Proc Natl Acad Sci U S A 101, 9309-9314 (2004).
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 9309-9314
    • Rhodes, D.R.1
  • 28
    • 34247217200 scopus 로고    scopus 로고
    • Hubs inbiological interactionnetworks exhibit low changes in expression in experimental asthma
    • Lu, X., Jain, V. V.,Finn, P.W. & Perkins,D.L.Hubs inbiological interactionnetworks exhibit low changes in expression in experimental asthma. Mol Syst Biol 3, 98 (2007).
    • (2007) Mol Syst Biol , vol.3 , pp. 98
    • Lu, X.1    Jain, V.V.2    Finn, P.W.3    Perkins, D.L.4
  • 29
    • 34547101963 scopus 로고    scopus 로고
    • Characterization of proteininteraction networks in tumors
    • Platzer, A., Perco, P., Lukas, A. & Mayer, B. Characterization of proteininteraction networks in tumors. BMC Bioinformatics 8, 224 (2007).
    • (2007) BMC Bioinformatics , vol.8 , pp. 224
    • Platzer, A.1    Perco, P.2    Lukas, A.3    Mayer, B.4
  • 30
    • 78149296035 scopus 로고    scopus 로고
    • Patterns of human gene expression variance show strong associations with signaling network hierarchy
    • Komurov, K. & Ram, P. T. Patterns of human gene expression variance show strong associations with signaling network hierarchy.BMCSyst Biol 4, 154 (2010).
    • (2010) BMCSyst Biol , vol.4 , pp. 154
    • Komurov, K.1    Ram, P.T.2
  • 31
    • 78049437880 scopus 로고    scopus 로고
    • Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data
    • pii: e1000889
    • Komurov, K., White, M. A. & Ram, P. T. Use of data-biased random walks on graphs for the retrieval of context-specific networks from genomic data. PLoS Comput Biol 6, pii: e1000889 (2010).
    • (2010) PLoS Comput Biol , vol.6
    • Komurov, K.1    White, M.A.2    Ram, P.T.3
  • 32
    • 33748706765 scopus 로고    scopus 로고
    • Global topological features of cancer proteins in the human interactome
    • Jonsson, P. F. & Bates, P. A. Global topological features of cancer proteins in the human interactome. Bioinformatics 22, 2291-2297 (2006).
    • (2006) Bioinformatics , vol.22 , pp. 2291-2297
    • Jonsson, P.F.1    Bates, P.A.2
  • 33
    • 33745656175 scopus 로고    scopus 로고
    • Characterizing disease states from topological properties of transcriptional regulatory networks
    • Tuck, D. P., Kluger, H. M. & Kluger, Y. Characterizing disease states from topological properties of transcriptional regulatory networks. BMC Bioinformatics 7, 236 (2006).
    • (2006) BMC Bioinformatics , vol.7 , pp. 236
    • Tuck, D.P.1    Kluger, H.M.2    Kluger, Y.3
  • 34
    • 67049159812 scopus 로고    scopus 로고
    • A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation
    • Hudson, N. J., Reverter, A. & Dalrymple, B. P. A differential wiring analysis of expression data correctly identifies the gene containing the causal mutation. PLoS Comput Biol 5, e1000382 (2009).
    • (2009) PLoS Comput Biol , vol.5 , pp. e1000382
    • Hudson, N.J.1    Reverter, A.2    Dalrymple, B.P.3
  • 35
    • 34548742517 scopus 로고    scopus 로고
    • Identification of functional modules using network topology and high-throughput data
    • Ulitsky, I. & Shamir, R. Identification of functional modules using network topology and high-throughput data. BMC Syst Biol 1, 8 (2007).
    • (2007) BMC Syst Biol , vol.1 , pp. 8
    • Ulitsky, I.1    Shamir, R.2
  • 36
    • 35348891430 scopus 로고    scopus 로고
    • Network-based classification of breast cancer metastasis
    • Chuang, H. Y., Lee, E., Liu, Y. T., Lee, D. & Ideker, T. Network-based classification of breast cancer metastasis. Mol Syst Biol 3, 140 (2007).
    • (2007) Mol Syst Biol , vol.3 , pp. 140
    • Chuang, H.Y.1    Lee, E.2    Liu, Y.T.3    Lee, D.4    Ideker, T.5
  • 37
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics
    • Yu, H., Kim, P. M., Sprecher, E., Trifonov, V. & Gerstein, M. The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 3, e59 (2007).
    • (2007) PLoS Comput Biol , vol.3 , pp. e59
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 38
    • 84882454737 scopus 로고    scopus 로고
    • An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways
    • West, J., Beck, S., Wang, X. & Teschendorff, A. E. An integrative network algorithm identifies age-associated differential methylation interactome hotspots targeting stem-cell differentiation pathways. Sci Rep 3, 1630 (2013).
    • (2013) Sci Rep , vol.3 , pp. 1630
    • West, J.1    Beck, S.2    Wang, X.3    Teschendorff, A.E.4
  • 39
    • 77349091815 scopus 로고    scopus 로고
    • Netpath: A public resource of curated signal transduction pathways
    • Kandasamy, K. et al. Netpath: a public resource of curated signal transduction pathways. Genome Biol 11, R3 (2010).
    • (2010) Genome Biol , vol.11 , pp. R3
    • Kandasamy, K.1
  • 40
    • 0001320248 scopus 로고    scopus 로고
    • Kolmogorov-sinai entropy rate versus physical entropy
    • Latora, V. &Baranger, M. Kolmogorov-sinai entropy rate versus physical entropy. Phys Rev Lett 82, 520-524 (1999).
    • (1999) Phys Rev Lett , vol.82 , pp. 520-524
    • Latora, V.1    Baranger, M.2
  • 41
    • 10444286683 scopus 로고    scopus 로고
    • Robustness and network evolution-an entropic principle
    • Demetrius, L. & Manke, T. Robustness and network evolution-an entropic principle. Physica A 346, 682-696 (2005).
    • (2005) Physica A , vol.346 , pp. 682-696
    • Demetrius, L.1    Manke, T.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.