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Volumn 4, Issue , 2010, Pages

Patterns of human gene expression variance show strong associations with signaling network hierarchy

Author keywords

[No Author keywords available]

Indexed keywords

MESSENGER RNA; PROTEIN; RNA POLYMERASE II;

EID: 78149296035     PISSN: None     EISSN: 17520509     Source Type: Journal    
DOI: 10.1186/1752-0509-4-154     Document Type: Article
Times cited : (22)

References (38)
  • 1
    • 20044384522 scopus 로고    scopus 로고
    • Mapping of genetic and epigenetic regulatory networks using microarrays
    • 10.1038/ng1559, 15920525
    • van Steensel B. Mapping of genetic and epigenetic regulatory networks using microarrays. Nature genetics 2005, 37(Suppl):S18-24. 10.1038/ng1559, 15920525.
    • (2005) Nature genetics , vol.37 , Issue.SUPPL
    • van Steensel, B.1
  • 2
    • 33748093767 scopus 로고    scopus 로고
    • Linking oncogenic pathways with therapeutic opportunities
    • 10.1038/nrc1976, 16915294
    • Bild AH, Potti A, Nevins JR. Linking oncogenic pathways with therapeutic opportunities. Nat Rev Cancer 2006, 6(9):735-741. 10.1038/nrc1976, 16915294.
    • (2006) Nat Rev Cancer , vol.6 , Issue.9 , pp. 735-741
    • Bild, A.H.1    Potti, A.2    Nevins, J.R.3
  • 3
    • 0036899286 scopus 로고    scopus 로고
    • From patterns to pathways: gene expression data analysis comes of age
    • 10.1038/ng1033, 12454645
    • Slonim DK. From patterns to pathways: gene expression data analysis comes of age. Nature genetics 2002, 32(Suppl):502-508. 10.1038/ng1033, 12454645.
    • (2002) Nature genetics , vol.32 , Issue.SUPPL , pp. 502-508
    • Slonim, D.K.1
  • 4
    • 20044388557 scopus 로고    scopus 로고
    • From signatures to models: understanding cancer using microarrays
    • 10.1038/ng1561, 15920529
    • Segal E, Friedman N, Kaminski N, Regev A, Koller D. From signatures to models: understanding cancer using microarrays. Nature genetics 2005, 37(Suppl):S38-45. 10.1038/ng1561, 15920529.
    • (2005) Nature genetics , vol.37 , Issue.SUPPL
    • Segal, E.1    Friedman, N.2    Kaminski, N.3    Regev, A.4    Koller, D.5
  • 5
    • 7444260846 scopus 로고    scopus 로고
    • The ENCODE (ENCyclopedia Of DNA Elements) Project
    • New York, NY, 10.1126/science.1105136, 15499007
    • The ENCODE (ENCyclopedia Of DNA Elements) Project. Science 2004, 306(5696):636-640. New York, NY, 10.1126/science.1105136, 15499007.
    • (2004) Science , vol.306 , Issue.5696 , pp. 636-640
  • 6
    • 0035895502 scopus 로고    scopus 로고
    • The human transcriptome map: clustering of highly expressed genes in chromosomal domains
    • New York, NY, 10.1126/science.1056794, 11181992
    • Caron H, van Schaik B, van der Mee M, Baas F, Riggins G, van Sluis P, Hermus MC, van Asperen R, Boon K, Voute PA, et al. The human transcriptome map: clustering of highly expressed genes in chromosomal domains. Science 2001, 291(5507):1289-1292. New York, NY, 10.1126/science.1056794, 11181992.
    • (2001) Science , vol.291 , Issue.5507 , pp. 1289-1292
    • Caron, H.1    van Schaik, B.2    van der Mee, M.3    Baas, F.4    Riggins, G.5    van Sluis, P.6    Hermus, M.C.7    van Asperen, R.8    Boon, K.9    Voute, P.A.10
  • 8
    • 23844519339 scopus 로고    scopus 로고
    • A high-resolution map of active promoters in the human genome
    • 10.1038/nature03877, 1895599, 15988478
    • Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B. A high-resolution map of active promoters in the human genome. Nature 2005, 436(7052):876-880. 10.1038/nature03877, 1895599, 15988478.
    • (2005) Nature , vol.436 , Issue.7052 , pp. 876-880
    • Kim, T.H.1    Barrera, L.O.2    Zheng, M.3    Qu, C.4    Singer, M.A.5    Richmond, T.A.6    Wu, Y.7    Green, R.D.8    Ren, B.9
  • 10
    • 67650225300 scopus 로고    scopus 로고
    • Fine-scale dissection of functional protein network organization by statistical network analysis
    • 10.1371/journal.pone.0006017, 2699632, 19554104
    • Komurov K, Gunes MH, White MA. Fine-scale dissection of functional protein network organization by statistical network analysis. PloS one 2009, 4(6):e6017. 10.1371/journal.pone.0006017, 2699632, 19554104.
    • (2009) PloS one , vol.4 , Issue.6
    • Komurov, K.1    Gunes, M.H.2    White, M.A.3
  • 11
    • 0346095291 scopus 로고    scopus 로고
    • Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae
    • 10.1038/nbt918, 14647306
    • Ihmels J, Levy R, Barkai N. Principles of transcriptional control in the metabolic network of Saccharomyces cerevisiae. Nature biotechnology 2004, 22(1):86-92. 10.1038/nbt918, 14647306.
    • (2004) Nature biotechnology , vol.22 , Issue.1 , pp. 86-92
    • Ihmels, J.1    Levy, R.2    Barkai, N.3
  • 12
    • 34247464637 scopus 로고    scopus 로고
    • Revealing static and dynamic modular architecture of the eukaryotic protein interaction network
    • 10.1038/msb4100149, 1865589, 17453049
    • Komurov K, White M. Revealing static and dynamic modular architecture of the eukaryotic protein interaction network. Molecular systems biology 2007, 3:110. 10.1038/msb4100149, 1865589, 17453049.
    • (2007) Molecular systems biology , vol.3 , pp. 110
    • Komurov, K.1    White, M.2
  • 13
  • 14
    • 0035733690 scopus 로고    scopus 로고
    • Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae
    • 10.1038/ng776, 11694880
    • Ge H, Liu Z, Church GM, Vidal M. Correlation between transcriptome and interactome mapping data from Saccharomyces cerevisiae. Nature genetics 2001, 29(4):482-486. 10.1038/ng776, 11694880.
    • (2001) Nature genetics , vol.29 , Issue.4 , pp. 482-486
    • Ge, H.1    Liu, Z.2    Church, G.M.3    Vidal, M.4
  • 15
    • 64349094767 scopus 로고    scopus 로고
    • Tissue specificity and the human protein interaction network
    • 10.1038/msb.2009.17, 2683721, 19357639
    • Bossi A, Lehner B. Tissue specificity and the human protein interaction network. Molecular systems biology 2009, 5:260. 10.1038/msb.2009.17, 2683721, 19357639.
    • (2009) Molecular systems biology , vol.5 , pp. 260
    • Bossi, A.1    Lehner, B.2
  • 16
    • 0037316303 scopus 로고    scopus 로고
    • A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
    • 10.1093/bioinformatics/19.2.185, 12538238
    • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics (Oxford, England) 2003, 19(2):185-193. 10.1093/bioinformatics/19.2.185, 12538238.
    • (2003) Bioinformatics (Oxford, England) , vol.19 , Issue.2 , pp. 185-193
    • Bolstad, B.M.1    Irizarry, R.A.2    Astrand, M.3    Speed, T.P.4
  • 18
    • 0033982936 scopus 로고    scopus 로고
    • KEGG: kyoto encyclopedia of genes and genomes
    • 10.1093/nar/28.1.27, 102409, 10592173
    • Kanehisa M, Goto S. KEGG: kyoto encyclopedia of genes and genomes. Nucleic acids research 2000, 28(1):27-30. 10.1093/nar/28.1.27, 102409, 10592173.
    • (2000) Nucleic acids research , vol.28 , Issue.1 , pp. 27-30
    • Kanehisa, M.1    Goto, S.2
  • 19
    • 13244284551 scopus 로고    scopus 로고
    • Dynamic complex formation during the yeast cell cycle
    • New York, NY, 10.1126/science.1105103, 15692050
    • de Lichtenberg U, Jensen LJ, Brunak S, Bork P. Dynamic complex formation during the yeast cell cycle. Science 2005, 307(5710):724-727. New York, NY, 10.1126/science.1105103, 15692050.
    • (2005) Science , vol.307 , Issue.5710 , pp. 724-727
    • de Lichtenberg, U.1    Jensen, L.J.2    Brunak, S.3    Bork, P.4
  • 20
    • 4644326931 scopus 로고    scopus 로고
    • Genomic analysis of regulatory network dynamics reveals large topological changes
    • 10.1038/nature02782, 15372033
    • Luscombe NM, Babu MM, Yu H, Snyder M, Teichmann SA, Gerstein M. Genomic analysis of regulatory network dynamics reveals large topological changes. Nature 2004, 431(7006):308-312. 10.1038/nature02782, 15372033.
    • (2004) Nature , vol.431 , Issue.7006 , pp. 308-312
    • Luscombe, N.M.1    Babu, M.M.2    Yu, H.3    Snyder, M.4    Teichmann, S.A.5    Gerstein, M.6
  • 21
    • 33846045953 scopus 로고    scopus 로고
    • Principles of microRNA regulation of a human cellular signaling network
    • 10.1038/msb4100089, 1681519, 16969338
    • Cui Q, Yu Z, Purisima EO, Wang E. Principles of microRNA regulation of a human cellular signaling network. Molecular systems biology 2006, 2:46. 10.1038/msb4100089, 1681519, 16969338.
    • (2006) Molecular systems biology , vol.2 , pp. 46
    • Cui, Q.1    Yu, Z.2    Purisima, E.O.3    Wang, E.4
  • 22
    • 27644506613 scopus 로고    scopus 로고
    • Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression
    • 10.1016/j.ccr.2005.10.001, 16286247
    • Varambally S, Yu J, Laxman B, Rhodes DR, Mehra R, Tomlins SA, Shah RB, Chandran U, Monzon FA, Becich MJ, et al. Integrative genomic and proteomic analysis of prostate cancer reveals signatures of metastatic progression. Cancer cell 2005, 8(5):393-406. 10.1016/j.ccr.2005.10.001, 16286247.
    • (2005) Cancer cell , vol.8 , Issue.5 , pp. 393-406
    • Varambally, S.1    Yu, J.2    Laxman, B.3    Rhodes, D.R.4    Mehra, R.5    Tomlins, S.A.6    Shah, R.B.7    Chandran, U.8    Monzon, F.A.9    Becich, M.J.10
  • 23
    • 33745220278 scopus 로고    scopus 로고
    • Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
    • 10.1038/nature04785, 16699522
    • Newman JR, Ghaemmaghami S, Ihmels J, Breslow DK, Noble M, DeRisi JL, Weissman JS. Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 2006, 441(7095):840-846. 10.1038/nature04785, 16699522.
    • (2006) Nature , vol.441 , Issue.7095 , pp. 840-846
    • Newman, J.R.1    Ghaemmaghami, S.2    Ihmels, J.3    Breslow, D.K.4    Noble, M.5    DeRisi, J.L.6    Weissman, J.S.7
  • 24
    • 8444248220 scopus 로고    scopus 로고
    • Integromic analysis of the NCI-60 cancer cell lines
    • Weinstein JN. Integromic analysis of the NCI-60 cancer cell lines. Breast disease 2004, 19:11-22.
    • (2004) Breast disease , vol.19 , pp. 11-22
    • Weinstein, J.N.1
  • 25
    • 43749088127 scopus 로고    scopus 로고
    • Two strategies for gene regulation by promoter nucleosomes
    • 10.1101/gr.076059.108, 2493397, 18448704
    • Tirosh I, Barkai N. Two strategies for gene regulation by promoter nucleosomes. Genome research 2008, 18(7):1084-1091. 10.1101/gr.076059.108, 2493397, 18448704.
    • (2008) Genome research , vol.18 , Issue.7 , pp. 1084-1091
    • Tirosh, I.1    Barkai, N.2
  • 26
    • 0028924386 scopus 로고
    • Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation
    • Krumm A, Hickey LB, Groudine M. Promoter-proximal pausing of RNA polymerase II defines a general rate-limiting step after transcription initiation. Genes & development 1995, 9(5):559-572.
    • (1995) Genes & development , vol.9 , Issue.5 , pp. 559-572
    • Krumm, A.1    Hickey, L.B.2    Groudine, M.3
  • 27
    • 33846862405 scopus 로고    scopus 로고
    • High-throughput mapping of the chromatin structure of human promoters
    • 10.1038/nbt1279, 17220878
    • Ozsolak F, Song JS, Liu XS, Fisher DE. High-throughput mapping of the chromatin structure of human promoters. Nature biotechnology 2007, 25(2):244-248. 10.1038/nbt1279, 17220878.
    • (2007) Nature biotechnology , vol.25 , Issue.2 , pp. 244-248
    • Ozsolak, F.1    Song, J.S.2    Liu, X.S.3    Fisher, D.E.4
  • 28
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: understanding the cell's functional organization
    • 10.1038/nrg1272, 14735121
    • Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nature reviews 2004, 5(2):101-113. 10.1038/nrg1272, 14735121.
    • (2004) Nature reviews , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.L.1    Oltvai, Z.N.2
  • 29
    • 0034721164 scopus 로고    scopus 로고
    • Error and attack tolerance of complex networks
    • 10.1038/35019019, 10935628
    • Albert R, Jeong H, Barabasi AL. Error and attack tolerance of complex networks. Nature 2000, 406(6794):378-382. 10.1038/35019019, 10935628.
    • (2000) Nature , vol.406 , Issue.6794 , pp. 378-382
    • Albert, R.1    Jeong, H.2    Barabasi, A.L.3
  • 30
    • 0347766006 scopus 로고    scopus 로고
    • Elevated rates of protein secretion, evolution, and disease among tissue-specific genes
    • 10.1101/gr.1924004, 314278, 14707169
    • Winter EE, Goodstadt L, Ponting CP. Elevated rates of protein secretion, evolution, and disease among tissue-specific genes. Genome research 2004, 14(1):54-61. 10.1101/gr.1924004, 314278, 14707169.
    • (2004) Genome research , vol.14 , Issue.1 , pp. 54-61
    • Winter, E.E.1    Goodstadt, L.2    Ponting, C.P.3
  • 34
    • 33846056843 scopus 로고    scopus 로고
    • Entrez Gene: gene-centered information at NCBI
    • 10.1093/nar/gkl993, 1761442, 17148475
    • Maglott D, Ostell J, Pruitt KD, Tatusova T. Entrez Gene: gene-centered information at NCBI. Nucleic acids research 2007, (35 Database):D26-31. 10.1093/nar/gkl993, 1761442, 17148475.
    • (2007) Nucleic acids research , Issue.35
    • Maglott, D.1    Ostell, J.2    Pruitt, K.D.3    Tatusova, T.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.