-
1
-
-
0742305866
-
Network biology: understanding the cell's functional organization
-
10.1038/nrg1272, 14735121
-
Barabasi AL, Oltvai ZN. Network biology: understanding the cell's functional organization. Nat Rev Genet 2004, 5:101-113. 10.1038/nrg1272, 14735121.
-
(2004)
Nat Rev Genet
, vol.5
, pp. 101-113
-
-
Barabasi, A.L.1
Oltvai, Z.N.2
-
2
-
-
75549085083
-
Human protein reference database and human proteinpedia as discovery tools for systems biology
-
full_text, 19718509
-
Prasad TS, Kandasamy K, Pandey A. Human protein reference database and human proteinpedia as discovery tools for systems biology. Methods Mol Biol 2009, 577:67-79. full_text, 19718509.
-
(2009)
Methods Mol Biol
, vol.577
, pp. 67-79
-
-
Prasad, T.S.1
Kandasamy, K.2
Pandey, A.3
-
3
-
-
33751395622
-
The value of high quality protein-protein interaction networks for systems biology
-
10.1016/j.cbpa.2006.10.005, 17055769
-
Stelzl U, Wanker EE. The value of high quality protein-protein interaction networks for systems biology. Curr Opin Chem Biol 2006, 10:551-558. 10.1016/j.cbpa.2006.10.005, 17055769.
-
(2006)
Curr Opin Chem Biol
, vol.10
, pp. 551-558
-
-
Stelzl, U.1
Wanker, E.E.2
-
4
-
-
18744376914
-
Online predicted human interaction database
-
10.1093/bioinformatics/bti273, 15657099
-
Brown KR, Jurisica I. Online predicted human interaction database. Bioinformatics 2005, 21:2076-2082. 10.1093/bioinformatics/bti273, 15657099.
-
(2005)
Bioinformatics
, vol.21
, pp. 2076-2082
-
-
Brown, K.R.1
Jurisica, I.2
-
5
-
-
0035799707
-
Lethality and centrality in protein networks
-
10.1038/35075138, 11333967
-
Jeong H, Mason SP, Barabási AL, Oltvai ZN. Lethality and centrality in protein networks. Nature 2001, 411:41-42. 10.1038/35075138, 11333967.
-
(2001)
Nature
, vol.411
, pp. 41-42
-
-
Jeong, H.1
Mason, S.P.2
Barabási, A.L.3
Oltvai, Z.N.4
-
6
-
-
32044451325
-
Cancer: a systems biology disease
-
10.1016/j.biosystems.2005.05.014, 16426740
-
Hornberg JJ, Bruggeman FJ, Westerhoff HV, Lankelma J. Cancer: a systems biology disease. Biosystems 2006, 83:81-90. 10.1016/j.biosystems.2005.05.014, 16426740.
-
(2006)
Biosystems
, vol.83
, pp. 81-90
-
-
Hornberg, J.J.1
Bruggeman, F.J.2
Westerhoff, H.V.3
Lankelma, J.4
-
7
-
-
33748706765
-
Global topological features of cancer proteins in the human interactome
-
10.1093/bioinformatics/btl390, 1865486, 16844706
-
Jonsson PF, Bates PA. Global topological features of cancer proteins in the human interactome. Bioinformatics 2006, 22:2291-2297. 10.1093/bioinformatics/btl390, 1865486, 16844706.
-
(2006)
Bioinformatics
, vol.22
, pp. 2291-2297
-
-
Jonsson, P.F.1
Bates, P.A.2
-
8
-
-
3042848952
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network
-
10.1038/nature02555, 15190252
-
Han JD, Bertin N, Hao T, Goldberg DS, Berriz GF, et al. Evidence for dynamically organized modularity in the yeast protein-protein interaction network. Nature 2004, 430:88-93. 10.1038/nature02555, 15190252.
-
(2004)
Nature
, vol.430
, pp. 88-93
-
-
Han, J.D.1
Bertin, N.2
Hao, T.3
Goldberg, D.S.4
Berriz, G.F.5
-
9
-
-
34247622363
-
The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics
-
10.1371/journal.pcbi.0030059, 1853125,1853125, 17447836
-
Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M. The importance of bottlenecks in protein networks: correlation with gene essentiality and expression dynamics. PLoS Comput Biol 2007, 3:e59. 10.1371/journal.pcbi.0030059, 1853125,1853125, 17447836.
-
(2007)
PLoS Comput Biol
, vol.3
-
-
Yu, H.1
Kim, P.M.2
Sprecher, E.3
Trifonov, V.4
Gerstein, M.5
-
10
-
-
46249127253
-
Identifying gene-disease associations using centrality on a literature mined gene-interaction network
-
10.1093/bioinformatics/btn182, 2718658, 18586725
-
Ozgür A, Vu T, Erkan G, Radev DR. Identifying gene-disease associations using centrality on a literature mined gene-interaction network. Bioinformatics 2008, 24:i277-i285. 10.1093/bioinformatics/btn182, 2718658, 18586725.
-
(2008)
Bioinformatics
, vol.24
-
-
Ozgür, A.1
Vu, T.2
Erkan, G.3
Radev, D.R.4
-
11
-
-
59849125136
-
Dynamic modularity in protein interaction networks predicts breast cancer outcome
-
10.1038/nbt.1522, 19182785
-
Taylor IW, Linding R, Warde-Farley D, Liu Y, Pesquita C, et al. Dynamic modularity in protein interaction networks predicts breast cancer outcome. Nat Biotechnol 2009, 27:199-204. 10.1038/nbt.1522, 19182785.
-
(2009)
Nat Biotechnol
, vol.27
, pp. 199-204
-
-
Taylor, I.W.1
Linding, R.2
Warde-Farley, D.3
Liu, Y.4
Pesquita, C.5
-
12
-
-
34547101963
-
Characterization of protein-interaction networks in tumors
-
10.1186/1471-2105-8-224, 1929125, 17597514
-
Platzer A, Perco P, Lukas A, Mayer B. Characterization of protein-interaction networks in tumors. BMC Bioinformatics 2007, 8:224. 10.1186/1471-2105-8-224, 1929125, 17597514.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 224
-
-
Platzer, A.1
Perco, P.2
Lukas, A.3
Mayer, B.4
-
13
-
-
35348891430
-
Network-based classification of breast cancer metastasis
-
10.1038/msb4100180, 2063581, 17940530
-
Chuang HY, Lee E, Liu YT, Lee D, Ideker T. Network-based classification of breast cancer metastasis. Mol Syst Biol 2007, 3:140. 10.1038/msb4100180, 2063581, 17940530.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 140
-
-
Chuang, H.Y.1
Lee, E.2
Liu, Y.T.3
Lee, D.4
Ideker, T.5
-
14
-
-
33847162049
-
Classification of microarray data using gene networks
-
10.1186/1471-2105-8-35, 1797191, 17270037
-
Rapaport F, Zinovyev A, Dutreix M, Barillot E, Vert JP. Classification of microarray data using gene networks. BMC Bioinformatics 2007, 8:35. 10.1186/1471-2105-8-35, 1797191, 17270037.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 35
-
-
Rapaport, F.1
Zinovyev, A.2
Dutreix, M.3
Barillot, E.4
Vert, J.P.5
-
15
-
-
34548742517
-
Identification of functional modules using network topology and high-throughput data
-
10.1186/1752-0509-1-8, 1839897, 17408515
-
Ulitsky I, Shamir R. Identification of functional modules using network topology and high-throughput data. BMC Syst Biol 2007, 1:8. 10.1186/1752-0509-1-8, 1839897, 17408515.
-
(2007)
BMC Syst Biol
, vol.1
, pp. 8
-
-
Ulitsky, I.1
Shamir, R.2
-
16
-
-
15944364151
-
An empirical bayes approach to inferring large-scale gene association networks
-
10.1093/bioinformatics/bti062, 15479708
-
Schäfer J, Strimmer K. An empirical bayes approach to inferring large-scale gene association networks. Bioinformatics 2005, 21:754-764. 10.1093/bioinformatics/bti062, 15479708.
-
(2005)
Bioinformatics
, vol.21
, pp. 754-764
-
-
Schäfer, J.1
Strimmer, K.2
-
17
-
-
33745656175
-
Characterizing disease states from topological properties of transcriptional regulatory networks
-
10.1186/1471-2105-7-236, 1482723, 16670008
-
Tuck DP, Kluger HM, Kluger Y. Characterizing disease states from topological properties of transcriptional regulatory networks. BMC Bioinformatics 2006, 7:236. 10.1186/1471-2105-7-236, 1482723, 16670008.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 236
-
-
Tuck, D.P.1
Kluger, H.M.2
Kluger, Y.3
-
18
-
-
35349024501
-
Network modeling links breast cancer susceptibility and centrosome dysfunction
-
10.1038/ng.2007.2, 17922014
-
Pujana MA, Han JD, Starita LM, Stevens KN, Tewari M, et al. Network modeling links breast cancer susceptibility and centrosome dysfunction. Nat Genet 2007, 39:1338-1349. 10.1038/ng.2007.2, 17922014.
-
(2007)
Nat Genet
, vol.39
, pp. 1338-1349
-
-
Pujana, M.A.1
Han, J.D.2
Starita, L.M.3
Stevens, K.N.4
Tewari, M.5
-
19
-
-
76749148657
-
An integrative -omics approach to identify functional subnetworks in human colorectal cancer
-
10.1371/journal.pcbi.1000639, 2797084, 20090827
-
Nibbe RK, Koyutürk M, Chance MR. An integrative -omics approach to identify functional subnetworks in human colorectal cancer. PLoS Comput Biol 2010, 6:e1000639. 10.1371/journal.pcbi.1000639, 2797084, 20090827.
-
(2010)
PLoS Comput Biol
, vol.6
-
-
Nibbe, R.K.1
Koyutürk, M.2
Chance, M.R.3
-
21
-
-
33748286796
-
A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers
-
10.1038/ng1861, 16921376
-
Carter SL, Eklund AC, Kohane IS, Harris LN, Szallasi Z. A signature of chromosomal instability inferred from gene expression profiles predicts clinical outcome in multiple human cancers. Nat Genet 2006, 38:1043-1048. 10.1038/ng1861, 16921376.
-
(2006)
Nat Genet
, vol.38
, pp. 1043-1048
-
-
Carter, S.L.1
Eklund, A.C.2
Kohane, I.S.3
Harris, L.N.4
Szallasi, Z.5
-
22
-
-
77649175453
-
Genomic instability--an evolving hallmark of cancer
-
10.1038/nrm2858, 20177397
-
Negrini S, Gorgoulis VG, Halazonetis TD. Genomic instability--an evolving hallmark of cancer. Nat Rev Mol Cell Biol 2010, 11:220-228. 10.1038/nrm2858, 20177397.
-
(2010)
Nat Rev Mol Cell Biol
, vol.11
, pp. 220-228
-
-
Negrini, S.1
Gorgoulis, V.G.2
Halazonetis, T.D.3
-
23
-
-
13844310310
-
Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer
-
Wang Y, Klijn JG, Zhang Y, Sieuwerts AM, Look MP, et al. Gene-expression profiles to predict distant metastasis of lymph-node-negative primary breast cancer. Lancet 2005, 365:671-679.
-
(2005)
Lancet
, vol.365
, pp. 671-679
-
-
Wang, Y.1
Klijn, J.G.2
Zhang, Y.3
Sieuwerts, A.M.4
Look, M.P.5
-
24
-
-
33845191779
-
Genomic and transcriptional aberrations linked to breast cancer pathophysiologies
-
10.1016/j.ccr.2006.10.009, 17157792
-
Chin K, DeVries S, Fridlyand J, Spellman PT, Roydasgupta R, et al. Genomic and transcriptional aberrations linked to breast cancer pathophysiologies. Cancer Cell 2006, 10:529-541. 10.1016/j.ccr.2006.10.009, 17157792.
-
(2006)
Cancer Cell
, vol.10
, pp. 529-541
-
-
Chin, K.1
DeVries, S.2
Fridlyand, J.3
Spellman, P.T.4
Roydasgupta, R.5
-
25
-
-
34247145491
-
Definition of clinically distinct molecular subtypes in estrogen receptor-positive breast carcinomas through genomic grade
-
10.1200/JCO.2006.07.1522, 17401012
-
Loi S, Haibe-Kains B, Desmedt C, Lallemand F, Tutt AM, et al. Definition of clinically distinct molecular subtypes in estrogen receptor-positive breast carcinomas through genomic grade. J Clin Oncol 2007, 25:1239-1246. 10.1200/JCO.2006.07.1522, 17401012.
-
(2007)
J Clin Oncol
, vol.25
, pp. 1239-1246
-
-
Loi, S.1
Haibe-Kains, B.2
Desmedt, C.3
Lallemand, F.4
Tutt, A.M.5
-
26
-
-
44849101184
-
The humoral immune system has a key prognostic impact in node-negative breast cancer
-
10.1158/0008-5472.CAN-07-5206, 18593943
-
Schmidt M, Böhm D, von Törne C, Steiner E, Puhl A, et al. The humoral immune system has a key prognostic impact in node-negative breast cancer. Cancer Res 2008, 68:5405-5413. 10.1158/0008-5472.CAN-07-5206, 18593943.
-
(2008)
Cancer Res
, vol.68
, pp. 5405-5413
-
-
Schmidt, M.1
Böhm, D.2
von Törne, C.3
Steiner, E.4
Puhl, A.5
-
27
-
-
0000468312
-
Statistical properties of randomly broken objects and of multivalley structures in disordered systems
-
Derrida B, Flyvbjerg H. Statistical properties of randomly broken objects and of multivalley structures in disordered systems. J Phys A:Math Gen 1987, 20:5273-5288.
-
(1987)
J Phys A:Math Gen
, vol.20
, pp. 5273-5288
-
-
Derrida, B.1
Flyvbjerg, H.2
-
30
-
-
0042424602
-
Statistical significance for genomewide studies
-
10.1073/pnas.1530509100, 170937, 12883005
-
Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci USA 2003, 100:9440-9445. 10.1073/pnas.1530509100, 170937, 12883005.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
31
-
-
39749108733
-
High-resolution acgh and expression profiling identifies a novel genomic subtype of er negative breast cancer
-
10.1186/gb-2007-8-10-r215, 2246289, 17925008
-
Chin SF, Teschendorff AE, Marioni JC, Wang Y, Barbosa-Morais NL, et al. High-resolution acgh and expression profiling identifies a novel genomic subtype of er negative breast cancer. Genome Biol 2007, 8:R215. 10.1186/gb-2007-8-10-r215, 2246289, 17925008.
-
(2007)
Genome Biol
, vol.8
-
-
Chin, S.F.1
Teschendorff, A.E.2
Marioni, J.C.3
Wang, Y.4
Barbosa-Morais, N.L.5
-
32
-
-
33748708623
-
Pack: Profile analysis using clustering and kurtosis to find molecular classifiers in cancer
-
10.1093/bioinformatics/btl174, 16682424
-
Teschendorff AE, Naderi A, Barbosa-Morais NL, Caldas C. Pack: Profile analysis using clustering and kurtosis to find molecular classifiers in cancer. Bioinformatics 2006, 22:2269-2275. 10.1093/bioinformatics/btl174, 16682424.
-
(2006)
Bioinformatics
, vol.22
, pp. 2269-2275
-
-
Teschendorff, A.E.1
Naderi, A.2
Barbosa-Morais, N.L.3
Caldas, C.4
-
33
-
-
33144462268
-
Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis
-
10.1093/jnci/djj052, 16478745
-
Sotiriou C, Wirapati P, Loi S, Harris A, Fox S, et al. Gene expression profiling in breast cancer: understanding the molecular basis of histologic grade to improve prognosis. J Natl Cancer Inst 2006, 98:262-272. 10.1093/jnci/djj052, 16478745.
-
(2006)
J Natl Cancer Inst
, vol.98
, pp. 262-272
-
-
Sotiriou, C.1
Wirapati, P.2
Loi, S.3
Harris, A.4
Fox, S.5
-
34
-
-
67651151400
-
Metastasis-promoting immunity: when t cells turn to the dark side
-
10.1016/j.ccr.2009.07.007, 19647215
-
Pardoll D. Metastasis-promoting immunity: when t cells turn to the dark side. Cancer Cell 2009, 16:81-82. 10.1016/j.ccr.2009.07.007, 19647215.
-
(2009)
Cancer Cell
, vol.16
, pp. 81-82
-
-
Pardoll, D.1
-
35
-
-
34648829133
-
An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer
-
10.1186/gb-2007-8-8-r157, 2374988, 17683518
-
Teschendorff AE, Miremadi A, Pinder SE, Ellis IO, Caldas C. An immune response gene expression module identifies a good prognosis subtype in estrogen receptor negative breast cancer. Genome Biol 2007, 8:R157. 10.1186/gb-2007-8-8-r157, 2374988, 17683518.
-
(2007)
Genome Biol
, vol.8
-
-
Teschendorff, A.E.1
Miremadi, A.2
Pinder, S.E.3
Ellis, I.O.4
Caldas, C.5
-
36
-
-
63349091533
-
A robust classifier of high predictive value to identify good prognosis patients in er-negative breast cancer
-
10.1186/bcr2138, 2575547, 18755024
-
Teschendorff AE, Caldas C. A robust classifier of high predictive value to identify good prognosis patients in er-negative breast cancer. Breast Cancer Res 2008, 10:R73. 10.1186/bcr2138, 2575547, 18755024.
-
(2008)
Breast Cancer Res
, vol.10
-
-
Teschendorff, A.E.1
Caldas, C.2
-
37
-
-
0031196766
-
The p53/igf-1 receptor axis in the regulation of programmed cell death
-
10.1007/BF02778075, 9449044
-
Neuberg M, Buckbinder L, Seizinger B, Kley N. The p53/igf-1 receptor axis in the regulation of programmed cell death. Endocrine 1997, 7:107-109. 10.1007/BF02778075, 9449044.
-
(1997)
Endocrine
, vol.7
, pp. 107-109
-
-
Neuberg, M.1
Buckbinder, L.2
Seizinger, B.3
Kley, N.4
-
38
-
-
33846874575
-
The role of the igf system in cancer growth and metastasis: overview and recent insights
-
10.1210/er.2006-0001, 16931767
-
Samani AA, Yakar S, LeRoith D, Brodt P. The role of the igf system in cancer growth and metastasis: overview and recent insights. Endocr Rev 2007, 28:20-47. 10.1210/er.2006-0001, 16931767.
-
(2007)
Endocr Rev
, vol.28
, pp. 20-47
-
-
Samani, A.A.1
Yakar, S.2
LeRoith, D.3
Brodt, P.4
-
39
-
-
57149137326
-
The igf system in mammary development and breast cancer
-
10.1007/s10911-008-9096-2, 19030973
-
Yee D, Wood TL. The igf system in mammary development and breast cancer. J Mammary Gland Biol Neoplasia 2008, 13:351-352. 10.1007/s10911-008-9096-2, 19030973.
-
(2008)
J Mammary Gland Biol Neoplasia
, vol.13
, pp. 351-352
-
-
Yee, D.1
Wood, T.L.2
-
40
-
-
33847348449
-
A gene-expression signature to predict survival in breast cancer across independent data sets
-
10.1038/sj.onc.1209920, 16936776
-
Naderi A, Teschendorff AE, Barbosa-Morais NL, Pinder SE, Green AR, et al. A gene-expression signature to predict survival in breast cancer across independent data sets. Oncogene 2007, 26:1507-1516. 10.1038/sj.onc.1209920, 16936776.
-
(2007)
Oncogene
, vol.26
, pp. 1507-1516
-
-
Naderi, A.1
Teschendorff, A.E.2
Barbosa-Morais, N.L.3
Pinder, S.E.4
Green, A.R.5
-
41
-
-
58149334773
-
A stroma-related gene signature predicts resistance to neoadjuvant chemotherapy in breast cancer
-
10.1038/nm.1908, 19122658
-
Farmer P, Bonnefoi H, Anderle P, Cameron D, Wirapati P, et al. A stroma-related gene signature predicts resistance to neoadjuvant chemotherapy in breast cancer. Nat Med 2009, 15:68-74. 10.1038/nm.1908, 19122658.
-
(2009)
Nat Med
, vol.15
, pp. 68-74
-
-
Farmer, P.1
Bonnefoi, H.2
Anderle, P.3
Cameron, D.4
Wirapati, P.5
|