-
1
-
-
34250887474
-
Taking gene-expression profiling to the clinic: When will molecular signatures become relevant to patient care?
-
Sotiriou, C. & Piccart, M. J. Taking gene-expression profiling to the clinic: when will molecular signatures become relevant to patient care? Nat. Rev. Cancer 7, 545-553 (2007).
-
(2007)
Nat. Rev. Cancer
, vol.7
, pp. 545-553
-
-
Sotiriou, C.1
Piccart, M.J.2
-
2
-
-
0036488531
-
Endocrine-responsive breast cancer and strategies for combating resistance
-
Ali, S. & Coombes, R. C. Endocrine-responsive breast cancer and strategies for combating resistance. Nat. Rev. Cancer 2, 101-112 (2002).
-
(2002)
Nat. Rev. Cancer
, vol.2
, pp. 101-112
-
-
Ali, S.1
Coombes, R.C.2
-
3
-
-
30944469849
-
Estrogen carcinogenesis in breast cancer
-
Yager, J. D. & Davidson, N. E. Estrogen carcinogenesis in breast cancer. N. Engl. J. Med. 354, 270-282 (2006).
-
(2006)
N. Engl. J. Med.
, vol.354
, pp. 270-282
-
-
Yager, J.D.1
Davidson, N.E.2
-
4
-
-
69249137029
-
Biological determinants of endocrine resistance in breast cancer
-
Musgrove, E. A. & Sutherland, R. L. Biological determinants of endocrine resistance in breast cancer. Nat. Rev. Cancer 9, 631-643 (2009).
-
(2009)
Nat. Rev. Cancer
, vol.9
, pp. 631-643
-
-
Musgrove, E.A.1
Sutherland, R.L.2
-
5
-
-
0023199060
-
Proliferation, hormonal responsiveness, and estrogen receptor content of MCF-7 human breast cancer cells grown in the short-term and long-term absence of estrogens
-
Katzenellenbogen, B. S., Kendra, K. L., Norman, M. J. & Berthois, Y. Proliferation, hormonal responsiveness, and estrogen receptor content of MCF-7 human breast cancer cells grown in the short-term and long-term absence of estrogens. Cancer Res. 47, 4355-4360 (1987).
-
(1987)
Cancer Res.
, vol.47
, pp. 4355-4360
-
-
Katzenellenbogen, B.S.1
Kendra, K.L.2
Norman, M.J.3
Berthois, Y.4
-
6
-
-
0023606475
-
Adaptation of estrogen-dependent MCF-7 cells to low estrogen (phenol red-free) culture
-
Welshons, W. V. & Jordan, V. C. Adaptation of estrogen-dependent MCF-7 cells to low estrogen (phenol red-free) culture. Eur. J. Cancer Clin. Oncol. 23, 1935-1939 (1987).
-
(1987)
Eur. J. Cancer Clin. Oncol.
, vol.23
, pp. 1935-1939
-
-
Welshons, W.V.1
Jordan, V.C.2
-
7
-
-
25844459070
-
Long-term estradiol deprivation in breast cancer cells up-regulates growth factor signaling and enhances estrogen sensitivity
-
Santen, R. J. et al. Long-term estradiol deprivation in breast cancer cells up-regulates growth factor signaling and enhances estrogen sensitivity. Endocr. Relat. Cancer 12(Suppl 1): S61-S73 (2005).
-
(2005)
Endocr. Relat. Cancer
, vol.12
, pp. S61-S73
-
-
Santen, R.J.1
-
8
-
-
0031791623
-
Estrogen receptor expression and function in long-term estrogen-deprived human breast cancer cells
-
Jeng, M. H. et al. Estrogen receptor expression and function in long-term estrogen-deprived human breast cancer cells. Endocrinology 139, 4164-4174 (1998).
-
(1998)
Endocrinology
, vol.139
, pp. 4164-4174
-
-
Jeng, M.H.1
-
9
-
-
0036702132
-
Molecular changes associated with the acquisition of oestrogen hypersensitivity in MCF-7 breast cancer cells on long-term oestrogen deprivation
-
Chan, C. M., Martin, L. A., Johnston, S. R., Ali, S. & Dowsett, M. Molecular changes associated with the acquisition of oestrogen hypersensitivity in MCF-7 breast cancer cells on long-term oestrogen deprivation. J. Steroid Biochem. Mol. Biol. 81, 333-341 (2002).
-
(2002)
J. Steroid Biochem. Mol. Biol.
, vol.81
, pp. 333-341
-
-
Chan, C.M.1
Martin, L.A.2
Johnston, S.R.3
Ali, S.4
Dowsett, M.5
-
10
-
-
0042232592
-
Enhanced estrogen receptor (ER) alpha, ERBB2, and MAPK signal transduction pathways operate during the adaptation of MCF-7 cells to long term estrogen deprivation
-
Martin, L. A. et al. Enhanced estrogen receptor (ER) alpha, ERBB2, and MAPK signal transduction pathways operate during the adaptation of MCF-7 cells to long term estrogen deprivation. J. Biol. Chem. 278, 30458-30468 (2003).
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 30458-30468
-
-
Martin, L.A.1
-
11
-
-
25844472419
-
Elevated ERK1/ERK2/estrogen receptor cross-talk enhances estrogen-mediated signaling during long-term estrogen deprivation
-
Martin, L. A., Farmer, I., Johnston, S. R., Ali, S. & Dowsett, M. Elevated ERK1/ERK2/estrogen receptor cross-talk enhances estrogen-mediated signaling during long-term estrogen deprivation. Endocr. Relat. Cancer 12 (Suppl 1): S75-S84 (2005).
-
(2005)
Endocr. Relat. Cancer
, vol.12
, pp. S75-S84
-
-
Martin, L.A.1
Farmer, I.2
Johnston, S.R.3
Ali, S.4
Dowsett, M.5
-
12
-
-
68949102467
-
Lower-dose vs high-dose oral estradiol therapy of hormone receptor-positive, aromatase inhibitor-resistant advanced breast cancer: A phase 2 randomized study
-
Ellis, M. J. et al. Lower-dose vs high-dose oral estradiol therapy of hormone receptor-positive, aromatase inhibitor-resistant advanced breast cancer: a phase 2 randomized study. J. Am. Med. Assoc. 302, 774-780 (2009).
-
(2009)
J. Am. Med. Assoc.
, vol.302
, pp. 774-780
-
-
Ellis, M.J.1
-
13
-
-
0034891355
-
High-dose estrogen treatment in postmenopausal breast cancer patients heavily exposed to endocrine therapy
-
Lonning, P. E. et al. High-dose estrogen treatment in postmenopausal breast cancer patients heavily exposed to endocrine therapy. Breast Cancer Res. Treat. 67, 111-116 (2001).
-
(2001)
Breast Cancer Res. Treat.
, vol.67
, pp. 111-116
-
-
Lonning, P.E.1
-
14
-
-
84884587085
-
Ethinylestradiol is beneficial for postmenopausal patients with heavily pre-treated metastatic breast cancer after prior aromatase inhibitor treatment: A prospective study
-
Iwase, H. et al. Ethinylestradiol is beneficial for postmenopausal patients with heavily pre-treated metastatic breast cancer after prior aromatase inhibitor treatment: a prospective study. Br. J. Cancer 109, 1537-1542 (2013).
-
(2013)
Br. J. Cancer
, vol.109
, pp. 1537-1542
-
-
Iwase, H.1
-
15
-
-
0942268864
-
Epigenetic dynamics of imprinted X inactivation during early mouse development
-
Okamoto, I., Otte, A. P., Allis, C. D., Reinberg, D. & Heard, E. Epigenetic dynamics of imprinted X inactivation during early mouse development. Science 303, 644-649 (2004).
-
(2004)
Science
, vol.303
, pp. 644-649
-
-
Okamoto, I.1
Otte, A.P.2
Allis, C.D.3
Reinberg, D.4
Heard, E.5
-
16
-
-
0028326787
-
Core histone hyperacetylation co-maps with generalized DNase i sensitivity in the chicken beta-globin chromosomal domain
-
Hebbes, T. R., Clayton, A. L., Thorne, A. W. & Crane-Robinson, C. Core histone hyperacetylation co-maps with generalized DNase I sensitivity in the chicken beta-globin chromosomal domain. EMBO J. 13, 1823-1830 (1994).
-
(1994)
EMBO J.
, vol.13
, pp. 1823-1830
-
-
Hebbes, T.R.1
Clayton, A.L.2
Thorne, A.W.3
Crane-Robinson, C.4
-
17
-
-
0034657720
-
Structural and functional conservation at the boundaries of the chicken beta-globin domain
-
Saitoh, N. et al. Structural and functional conservation at the boundaries of the chicken beta-globin domain. EMBO J. 19, 2315-2322 (2000).
-
(2000)
EMBO J.
, vol.19
, pp. 2315-2322
-
-
Saitoh, N.1
-
18
-
-
0018867216
-
Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase i
-
Stalder, J. et al. Tissue-specific DNA cleavages in the globin chromatin domain introduced by DNAase I. Cell 20, 451-460 (1980).
-
(1980)
Cell
, vol.20
, pp. 451-460
-
-
Stalder, J.1
-
19
-
-
84861095603
-
Topological domains in mammalian genomes identified by analysis of chromatin interactions
-
Dixon, J. R. et al. Topological domains in mammalian genomes identified by analysis of chromatin interactions. Nature 485, 376-380 (2012).
-
(2012)
Nature
, vol.485
, pp. 376-380
-
-
Dixon, J.R.1
-
20
-
-
84861100147
-
Spatial partitioning of the regulatory landscape of the X-inactivation centre
-
Nora, E. P. et al. Spatial partitioning of the regulatory landscape of the X-inactivation centre. Nature 485, 381-385 (2012).
-
(2012)
Nature
, vol.485
, pp. 381-385
-
-
Nora, E.P.1
-
21
-
-
84881613036
-
Segmental folding of chromosomes: A basis for structural and regulatory chromosomal neighborhoods?
-
Nora, E. P., Dekker, J. & Heard, E. Segmental folding of chromosomes: a basis for structural and regulatory chromosomal neighborhoods? Bioessays 35, 818-828 (2013).
-
(2013)
Bioessays
, vol.35
, pp. 818-828
-
-
Nora, E.P.1
Dekker, J.2
Heard, E.3
-
22
-
-
84875190221
-
Genome architecture: Domain organization of interphase chromosomes
-
Bickmore, W. A. & van Steensel, B. Genome architecture: domain organization of interphase chromosomes. Cell 152, 1270-1284 (2013).
-
(2013)
Cell
, vol.152
, pp. 1270-1284
-
-
Bickmore, W.A.1
Van Steensel, B.2
-
23
-
-
84886252113
-
RNA in unexpected places: Long non-coding RNA functions in diverse cellular contexts
-
Geisler, S. & Coller, J. RNA in unexpected places: long non-coding RNA functions in diverse cellular contexts. Nat. Rev. Mol. Cell Biol. 14, 699-712 (2013).
-
(2013)
Nat. Rev. Mol. Cell Biol.
, vol.14
, pp. 699-712
-
-
Geisler, S.1
Coller, J.2
-
24
-
-
24644519490
-
The transcriptional landscape of the mammalian genome
-
Carninci, P. et al. The transcriptional landscape of the mammalian genome. Science 309, 1559-1563 (2005).
-
(2005)
Science
, vol.309
, pp. 1559-1563
-
-
Carninci, P.1
-
25
-
-
30044434769
-
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
-
Ravasi, T. et al. Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome. Genome Res. 16, 11-19 (2006).
-
(2006)
Genome Res.
, vol.16
, pp. 11-19
-
-
Ravasi, T.1
-
26
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali, S. et al. Landscape of transcription in human cells. Nature 489, 101-108 (2012).
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
-
27
-
-
84871069553
-
Epigenetic regulation by long noncoding RNAs
-
Lee, J. T. Epigenetic regulation by long noncoding RNAs. Science 338, 1435-1439 (2012).
-
(2012)
Science
, vol.338
, pp. 1435-1439
-
-
Lee, J.T.1
-
28
-
-
0031444281
-
Resveratrol, a polyphenolic compound found in grapes and wine, is an agonist for the estrogen receptor
-
Gehm, B. D., McAndrews, J. M., Chien, P. Y. & Jameson, J. L. Resveratrol, a polyphenolic compound found in grapes and wine, is an agonist for the estrogen receptor. Proc. Natl Acad. Sci. USA 94, 14138-14143 (1997).
-
(1997)
Proc. Natl Acad. Sci. USA
, vol.94
, pp. 14138-14143
-
-
Gehm, B.D.1
McAndrews, J.M.2
Chien, P.Y.3
Jameson, J.L.4
-
29
-
-
84899621303
-
Resveratrol modulates the inflammatory response via an estrogen receptor-signal integration network
-
Nwachukwu, J. C. et al. Resveratrol modulates the inflammatory response via an estrogen receptor-signal integration network. eLife 3, e02057 (2014).
-
(2014)
ELife
, vol.3
, pp. e02057
-
-
Nwachukwu, J.C.1
-
30
-
-
0036969268
-
Variable levels of chromosomal instability and mitotic spindle checkpoint defects in breast cancer
-
Yoon, D. S. et al. Variable levels of chromosomal instability and mitotic spindle checkpoint defects in breast cancer. Am. J. Pathol. 161, 391-397 (2002).
-
(2002)
Am. J. Pathol.
, vol.161
, pp. 391-397
-
-
Yoon, D.S.1
-
31
-
-
78149471574
-
Biological reprogramming in acquired resistance to endocrine therapy of breast cancer
-
Aguilar, H. et al. Biological reprogramming in acquired resistance to endocrine therapy of breast cancer. Oncogene 29, 6071-6083 (2010).
-
(2010)
Oncogene
, vol.29
, pp. 6071-6083
-
-
Aguilar, H.1
-
32
-
-
77954974573
-
Hyperactivation of phosphatidylinositol-3 kinase promotes escape from hormone dependence in estrogen receptor-positive human breast cancer
-
Miller, T. W. et al. Hyperactivation of phosphatidylinositol-3 kinase promotes escape from hormone dependence in estrogen receptor-positive human breast cancer. J. Clin. Invest. 120, 2406-2413 (2010).
-
(2010)
J. Clin. Invest.
, vol.120
, pp. 2406-2413
-
-
Miller, T.W.1
-
33
-
-
0034680102
-
Molecular portraits of human breast tumours
-
Perou, C. M. et al. Molecular portraits of human breast tumours. Nature 406, 747-752 (2000).
-
(2000)
Nature
, vol.406
, pp. 747-752
-
-
Perou, C.M.1
-
34
-
-
0037478605
-
Repeated observation of breast tumor subtypes in independent gene expression data sets
-
Sorlie, T. et al. Repeated observation of breast tumor subtypes in independent gene expression data sets. Proc. Natl Acad. Sci. USA 100, 8418-8423 (2003).
-
(2003)
Proc. Natl Acad. Sci. USA
, vol.100
, pp. 8418-8423
-
-
Sorlie, T.1
-
35
-
-
0035208142
-
Minireview: Genomic organization of the human ERalpha gene promoter region
-
Kos, M., Reid, G., Denger, S. & Gannon, F. Minireview: genomic organization of the human ERalpha gene promoter region. Mol. Endocrinol. 15, 2057-2063 (2001).
-
(2001)
Mol. Endocrinol.
, vol.15
, pp. 2057-2063
-
-
Kos, M.1
Reid, G.2
Denger, S.3
Gannon, F.4
-
36
-
-
0036286677
-
Human estrogen receptor-alpha: Regulation by synthesis, modification and degradation
-
Reid, G., Denger, S., Kos, M. & Gannon, F. Human estrogen receptor-alpha: regulation by synthesis, modification and degradation. Cell. Mol. Life. Sci. 59, 821-831 (2002).
-
(2002)
Cell. Mol. Life. Sci.
, vol.59
, pp. 821-831
-
-
Reid, G.1
Denger, S.2
Kos, M.3
Gannon, F.4
-
37
-
-
77952367798
-
Widespread transcription at neuronal activity-regulated enhancers
-
Kim, T. K. et al. Widespread transcription at neuronal activity-regulated enhancers. Nature 465, 182-187 (2010).
-
(2010)
Nature
, vol.465
, pp. 182-187
-
-
Kim, T.K.1
-
38
-
-
84865760395
-
GENCODE: The reference human genome annotation for the ENCODE project
-
Harrow, J. et al. GENCODE: the reference human genome annotation for The ENCODE Project. Genome Res. 22, 1760-1774 (2012).
-
(2012)
Genome Res.
, vol.22
, pp. 1760-1774
-
-
Harrow, J.1
-
39
-
-
0036079158
-
The human genome browser at UCSC
-
Kent, W. J. et al. The human genome browser at UCSC. Genome Res. 12, 996-1006 (2002).
-
(2002)
Genome Res.
, vol.12
, pp. 996-1006
-
-
Kent, W.J.1
-
40
-
-
33847334699
-
Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome
-
Heintzman, N. D. et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome. Nat. Genet. 39, 311-318 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 311-318
-
-
Heintzman, N.D.1
-
41
-
-
84655164920
-
Large-scale discovery of enhancers from human heart tissue
-
rMay, D. et al. Large-scale discovery of enhancers from human heart tissue. Nat. Genet. 44, 89-93 (2012).
-
(2012)
Nat. Genet.
, vol.44
, pp. 89-93
-
-
Rmay, D.1
-
42
-
-
70249109717
-
Repression of ESR1 through actions of estrogen receptor alpha and Sin3A at the proximal promoter
-
Ellison-Zelski, S. J., Solodin, N. M. & Alarid, E. T. Repression of ESR1 through actions of estrogen receptor alpha and Sin3A at the proximal promoter. Mol. Cell. Biol. 29, 4949-4958 (2009).
-
(2009)
Mol. Cell. Biol.
, vol.29
, pp. 4949-4958
-
-
Ellison-Zelski, S.J.1
Solodin, N.M.2
Alarid, E.T.3
-
43
-
-
0027358687
-
Circumvention of tamoxifen resistance by the pure anti-estrogen ICI 182,780
-
Hu, X. F. et al. Circumvention of tamoxifen resistance by the pure anti-estrogen ICI 182,780. Int. J. Cancer 55, 873-876 (1993).
-
(1993)
Int. J. Cancer
, vol.55
, pp. 873-876
-
-
Hu, X.F.1
-
44
-
-
79955599577
-
ESR1 is co-expressed with closely adjacent uncharacterised genes spanning a breast cancer susceptibility locus at 6q25.1
-
Dunbier, A. K. et al. ESR1 is co-expressed with closely adjacent uncharacterised genes spanning a breast cancer susceptibility locus at 6q25.1. PLoS Genet. 7, e1001382 (2011).
-
(2011)
PLoS Genet.
, vol.7
, pp. e1001382
-
-
Dunbier, A.K.1
-
45
-
-
84881452051
-
Transcription poisoning by Topoisomerase i is controlled by gene length, splice sites, and miR-142-3p
-
Solier, S. et al. Transcription poisoning by Topoisomerase I is controlled by gene length, splice sites, and miR-142-3p. Cancer Res. 73, 4830-4839 (2013).
-
(2013)
Cancer Res.
, vol.73
, pp. 4830-4839
-
-
Solier, S.1
-
46
-
-
0038692119
-
Human housekeeping genes are compact
-
Eisenberg, E. & Levanon, E. Y. Human housekeeping genes are compact. Trends Genet. 19, 362-365 (2003).
-
(2003)
Trends Genet.
, vol.19
, pp. 362-365
-
-
Eisenberg, E.1
Levanon, E.Y.2
-
47
-
-
84883740518
-
Topoisomerases facilitate transcription of long genes linked to autism
-
King, I. F. et al. Topoisomerases facilitate transcription of long genes linked to autism. Nature 501, 58-62 (2013).
-
(2013)
Nature
, vol.501
, pp. 58-62
-
-
King, I.F.1
-
48
-
-
0030722152
-
Auto-regulation of the estrogen receptor promoter
-
Castles, C. G., Oesterreich, S., Hansen, R. & Fuqua, S. A. Auto-regulation of the estrogen receptor promoter. J. Steroid Biochem. Mol. Biol. 62, 155-163 (1997).
-
(1997)
J. Steroid Biochem. Mol. Biol.
, vol.62
, pp. 155-163
-
-
Castles, C.G.1
Oesterreich, S.2
Hansen, R.3
Fuqua, S.A.4
-
49
-
-
77955110979
-
Genome-wide computational identification and manual annotation of human long noncoding RNA genes
-
Jia, H. et al. Genome-wide computational identification and manual annotation of human long noncoding RNA genes. RNA 16, 1478-1487 (2010).
-
(2010)
RNA
, vol.16
, pp. 1478-1487
-
-
Jia, H.1
-
50
-
-
0030826364
-
Intergenic transcription and transinduction of the human beta-globin locus
-
Ashe, H. L., Monks, J., Wijgerde, M., Fraser, P. & Proudfoot, N. J. Intergenic transcription and transinduction of the human beta-globin locus. Genes Dev. 11, 2494-2509 (1997).
-
(1997)
Genes Dev.
, vol.11
, pp. 2494-2509
-
-
Ashe, H.L.1
Monks, J.2
Wijgerde, M.3
Fraser, P.4
Proudfoot, N.J.5
-
51
-
-
84874651771
-
XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells
-
Vallot, C. et al. XACT, a long noncoding transcript coating the active X chromosome in human pluripotent cells. Nat. Genet. 45, 239-241 (2013).
-
(2013)
Nat. Genet.
, vol.45
, pp. 239-241
-
-
Vallot, C.1
-
52
-
-
56549111129
-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin
-
Nagano, T. et al. The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin. Science 322, 1717-1720 (2008).
-
(2008)
Science
, vol.322
, pp. 1717-1720
-
-
Nagano, T.1
-
53
-
-
84869083054
-
Df31 protein and snoRNAs maintain accessible higher-order structures of chromatin
-
Schubert, T. et al. Df31 protein and snoRNAs maintain accessible higher-order structures of chromatin. Mol. Cell 48, 434-444 (2012).
-
(2012)
Mol. Cell
, vol.48
, pp. 434-444
-
-
Schubert, T.1
-
54
-
-
84896840947
-
Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes
-
Hall, L. L. et al. Stable C0T-1 repeat RNA is abundant and is associated with euchromatic interphase chromosomes. Cell 156, 907-919 (2014).
-
(2014)
Cell
, vol.156
, pp. 907-919
-
-
Hall, L.L.1
-
55
-
-
0031044166
-
Xistdeficient mice are defective in dosage compensation but not spermatogenesis
-
Marahrens, Y., Panning, B., Dausman, J., Strauss, W. & Jaenisch, R. Xistdeficient mice are defective in dosage compensation but not spermatogenesis. Genes Dev. 11, 156-166 (1997).
-
(1997)
Genes Dev.
, vol.11
, pp. 156-166
-
-
Marahrens, Y.1
Panning, B.2
Dausman, J.3
Strauss, W.4
Jaenisch, R.5
-
56
-
-
0026655632
-
Introns excised from the Delta primary transcript are localized near sites of Delta transcription
-
Kopczynski, C. C. & Muskavitch, M. A. Introns excised from the Delta primary transcript are localized near sites of Delta transcription. J. Cell Biol. 119, 503-512 (1992).
-
(1992)
J. Cell Biol.
, vol.119
, pp. 503-512
-
-
Kopczynski, C.C.1
Muskavitch, M.A.2
-
57
-
-
84863718299
-
Intronic RNAs mediate EZH2 regulation of epigenetic targets
-
Guil, S. et al. Intronic RNAs mediate EZH2 regulation of epigenetic targets. Nat. Struct. Mol. Biol. 19, 664-670 (2012).
-
(2012)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 664-670
-
-
Guil, S.1
-
58
-
-
84869151299
-
Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis
-
Gardner, E. J., Nizami, Z. F., Talbot, Jr C. C. & Gall, J. G. Stable intronic sequence RNA (sisRNA), a new class of noncoding RNA from the oocyte nucleus of Xenopus tropicalis. Genes Dev. 26, 2550-2559 (2012).
-
(2012)
Genes Dev.
, vol.26
, pp. 2550-2559
-
-
Gardner, E.J.1
Nizami, Z.F.2
Talbot, C.C.3
Gall, J.G.4
-
59
-
-
84888187077
-
Dealing with pervasive transcription
-
Jensen, T. H., Jacquier, A. & Libri, D. Dealing with pervasive transcription. Mol. Cell 52, 473-484 (2013).
-
(2013)
Mol. Cell
, vol.52
, pp. 473-484
-
-
Jensen, T.H.1
Jacquier, A.2
Libri, D.3
-
60
-
-
34247634643
-
Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer
-
Holst, F. et al. Estrogen receptor alpha (ESR1) gene amplification is frequent in breast cancer. Nat. Genet. 39, 655-660 (2007).
-
(2007)
Nat. Genet.
, vol.39
, pp. 655-660
-
-
Holst, F.1
-
61
-
-
67649870743
-
Estrogen receptor alpha gene ESR1 amplification may predict endocrine therapy responsiveness in breast cancer patients
-
Tomita, S. et al. Estrogen receptor alpha gene ESR1 amplification may predict endocrine therapy responsiveness in breast cancer patients. Cancer Sci. 100, 1012-1017 (2009).
-
(2009)
Cancer Sci.
, vol.100
, pp. 1012-1017
-
-
Tomita, S.1
-
62
-
-
84859631946
-
Gene amplification of ESR1 in breast cancers-fact or fiction? A fluorescence in situ hybridization and multiplex ligation-dependent probe amplification study
-
Ooi, A. et al. Gene amplification of ESR1 in breast cancers-fact or fiction? A fluorescence in situ hybridization and multiplex ligation-dependent probe amplification study. J. Pathol. 227, 8-16 (2012).
-
(2012)
J. Pathol.
, vol.227
, pp. 8-16
-
-
Ooi, A.1
-
63
-
-
84876204394
-
Genome-wide reprogramming of the chromatin landscape underlies endocrine therapy resistance in breast cancer
-
Magnani, L. et al. Genome-wide reprogramming of the chromatin landscape underlies endocrine therapy resistance in breast cancer. Proc. Natl Acad. Sci. USA 110, E1490-E1499 (2013).
-
(2013)
Proc. Natl Acad. Sci. USA
, vol.110
, pp. E1490-E1499
-
-
Magnani, L.1
-
64
-
-
0036829333
-
Molecular changes accompanying senescence and immortalization of cultured human mammary epithelial cells
-
Yaswen, P. & Stampfer, M. R. Molecular changes accompanying senescence and immortalization of cultured human mammary epithelial cells. Int. J. Biochem. Cell. Biol. 34, 1382-1394 (2002).
-
(2002)
Int. J. Biochem. Cell. Biol.
, vol.34
, pp. 1382-1394
-
-
Yaswen, P.1
Stampfer, M.R.2
-
65
-
-
65449136284
-
TopHat: Discovering splice junctions with RNA-Seq
-
Trapnell, C., Pachter, L. & Salzberg, S. L. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 25, 1105-1111 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 1105-1111
-
-
Trapnell, C.1
Pachter, L.2
Salzberg, S.L.3
-
66
-
-
77952123055
-
Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation
-
Trapnell, C. et al. Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation. Nat. Biotechnol. 28, 511-515 (2010).
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 511-515
-
-
Trapnell, C.1
-
67
-
-
77958471357
-
Differential expression analysis for sequence count data
-
Anders, S. & Huber, W. Differential expression analysis for sequence count data. Genome Biol. 11, R106 (2010).
-
(2010)
Genome Biol.
, vol.11
, pp. R106
-
-
Anders, S.1
Huber, W.2
-
68
-
-
41149085992
-
Small-sample estimation of negative binomial dispersion, with applications to SAGE data
-
Robinson, M. D. & Smyth, G. K. Small-sample estimation of negative binomial dispersion, with applications to SAGE data. Biostatistics 9, 321-332 (2008).
-
(2008)
Biostatistics
, vol.9
, pp. 321-332
-
-
Robinson, M.D.1
Smyth, G.K.2
|