-
1
-
-
84858081250
-
The origin and diversity of the HIV-1 pandemic
-
Hemelaar J. The origin and diversity of the HIV-1 pandemic. Trends Mol Med. 2012;18:182-92.
-
(2012)
Trends Mol Med
, vol.18
, pp. 182-192
-
-
Hemelaar, J.1
-
2
-
-
0037189323
-
Diversity considerations in HIV-1 vaccine selection
-
Gaschen B, Taylor J, Yusim K, Foley B, Gao F, Lang D, et al. Diversity considerations in HIV-1 vaccine selection. Science. 2002;296:2354-60.
-
(2002)
Science
, vol.296
, pp. 2354-2360
-
-
Gaschen, B.1
Taylor, J.2
Yusim, K.3
Foley, B.4
Gao, F.5
Lang, D.6
-
4
-
-
84858409977
-
The structural biology of HIV-1: mechanistic and therapeutic insights
-
Engelman A, Cherepanov P. The structural biology of HIV-1: mechanistic and therapeutic insights. Nat Rev Microbiol. 2012;10:279-90.
-
(2012)
Nat Rev Microbiol
, vol.10
, pp. 279-290
-
-
Engelman, A.1
Cherepanov, P.2
-
5
-
-
84891084459
-
Revisiting dengue virus-host cell interaction: new insights into molecular and cellular virology
-
Acosta EG, Kumar A, Bartenschlager R. Revisiting dengue virus-host cell interaction: new insights into molecular and cellular virology. Adv Virus Res. 2014;88:1-109.
-
(2014)
Adv Virus Res
, vol.88
, pp. 1-109
-
-
Acosta, E.G.1
Kumar, A.2
Bartenschlager, R.3
-
6
-
-
84893087056
-
Elvitegravir/cobicistat/emtricitabine/tenofovir disoproxil fumarate single-tablet regimen (Stribild(R)): a review of its use in the management of HIV-1 infection in adults
-
Perry CM. Elvitegravir/cobicistat/emtricitabine/tenofovir disoproxil fumarate single-tablet regimen (Stribild(R)): a review of its use in the management of HIV-1 infection in adults. Drugs. 2014;74:75-97.
-
(2014)
Drugs
, vol.74
, pp. 75-97
-
-
Perry, C.M.1
-
7
-
-
73549092165
-
Entry inhibitors in the treatment of HIV-1 infection
-
Tilton JC, Doms RW. Entry inhibitors in the treatment of HIV-1 infection. Antiviral Res. 2010;85:91-100.
-
(2010)
Antiviral Res
, vol.85
, pp. 91-100
-
-
Tilton, J.C.1
Doms, R.W.2
-
9
-
-
84887394848
-
Functional conservation of HIV-1 gag: implications for rational drug design
-
Li G, Verheyen J, Rhee SY, Voet A, Vandamme AM, Theys K. Functional conservation of HIV-1 gag: implications for rational drug design. Retrovirology. 2013;10:126.
-
(2013)
Retrovirology
, vol.10
, pp. 126
-
-
Li, G.1
Verheyen, J.2
Rhee, S.Y.3
Voet, A.4
Vandamme, A.M.5
Theys, K.6
-
10
-
-
84879290459
-
A global approach to HIV-1 vaccine development
-
Stephenson KE, Barouch DH. A global approach to HIV-1 vaccine development. Immunol Rev. 2013;254:295-304.
-
(2013)
Immunol Rev
, vol.254
, pp. 295-304
-
-
Stephenson, K.E.1
Barouch, D.H.2
-
11
-
-
79952445068
-
Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial
-
Rolland M, Tovanabutra S, deCamp AC, Frahm N, Gilbert PB, Sanders-Buell E, et al. Genetic impact of vaccination on breakthrough HIV-1 sequences from the STEP trial. Nat Med. 2011;17:366-71.
-
(2011)
Nat Med
, vol.17
, pp. 366-371
-
-
Rolland, M.1
Tovanabutra, S.2
deCamp, A.C.3
Frahm, N.4
Gilbert, P.B.5
Sanders-Buell, E.6
-
12
-
-
84867653590
-
Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2
-
Rolland M, Edlefsen PT, Larsen BB, Tovanabutra S, Sanders-Buell E, Hertz T, et al. Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2. Nature. 2012;490:417-20.
-
(2012)
Nature
, vol.490
, pp. 417-420
-
-
Rolland, M.1
Edlefsen, P.T.2
Larsen, B.B.3
Tovanabutra, S.4
Sanders-Buell, E.5
Hertz, T.6
-
13
-
-
33846502673
-
Is HIV-1 evolving to a less virulent form in humans?
-
Arien KK, Vanham G, Arts EJ. Is HIV-1 evolving to a less virulent form in humans? Nat Rev Microbiol. 2007;5:141-51.
-
(2007)
Nat Rev Microbiol
, vol.5
, pp. 141-151
-
-
Arien, K.K.1
Vanham, G.2
Arts, E.J.3
-
14
-
-
79960419997
-
Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes
-
Herbeck JT, Rolland M, Liu Y, McLaughlin S, McNevin J, Zhao H, et al. Demographic processes affect HIV-1 evolution in primary infection before the onset of selective processes. J Virol. 2011;85:7523-34.
-
(2011)
J Virol
, vol.85
, pp. 7523-7534
-
-
Herbeck, J.T.1
Rolland, M.2
Liu, Y.3
McLaughlin, S.4
McNevin, J.5
Zhao, H.6
-
15
-
-
33746150392
-
Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes
-
Rousseau CM, Birditt BA, McKay AR, Stoddard JN, Lee TC, McLaughlin S, et al. Large-scale amplification, cloning and sequencing of near full-length HIV-1 subtype C genomes. J Virol Methods. 2006;136:118-25.
-
(2006)
J Virol Methods
, vol.136
, pp. 118-125
-
-
Rousseau, C.M.1
Birditt, B.A.2
McKay, A.R.3
Stoddard, J.N.4
Lee, T.C.5
McLaughlin, S.6
-
16
-
-
59649108841
-
Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1
-
Wang YE, Li B, Carlson JM, Streeck H, Gladden AD, Goodman R, et al. Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human immunodeficiency virus type 1. J Virol. 2009;83:1845-55.
-
(2009)
J Virol
, vol.83
, pp. 1845-1855
-
-
Wang, Y.E.1
Li, B.2
Carlson, J.M.3
Streeck, H.4
Gladden, A.D.5
Goodman, R.6
-
17
-
-
20944444788
-
Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines
-
Brown BK, Darden JM, Tovanabutra S, Oblander T, Frost J, Sanders-Buell E, et al. Biologic and genetic characterization of a panel of 60 human immunodeficiency virus type 1 isolates, representing clades A, B, C, D, CRF01_AE, and CRF02_AG, for the development and assessment of candidate vaccines. J Virol. 2005;79:6089-101.
-
(2005)
J Virol
, vol.79
, pp. 6089-6101
-
-
Brown, B.K.1
Darden, J.M.2
Tovanabutra, S.3
Oblander, T.4
Frost, J.5
Sanders-Buell, E.6
-
18
-
-
60549093792
-
Development of a panel of well-characterized human immunodeficiency virus type 1 isolates from newly diagnosed patients including acute and recent infections
-
Fernandez-Garcia A, Cuevas MT, Munoz-Nieto M, Ocampo A, Pinilla M, Garcia V, et al. Development of a panel of well-characterized human immunodeficiency virus type 1 isolates from newly diagnosed patients including acute and recent infections. AIDS Res Hum Retroviruses. 2009;25:93-102.
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, pp. 93-102
-
-
Fernandez-Garcia, A.1
Cuevas, M.T.2
Munoz-Nieto, M.3
Ocampo, A.4
Pinilla, M.5
Garcia, V.6
-
19
-
-
70349213752
-
Near full-length genetic analysis of HIV sequences derived from Cyprus: evidence of a highly polyphyletic and evolving infection
-
Kousiappa I, Van De Vijver DA, Kostrikis LG. Near full-length genetic analysis of HIV sequences derived from Cyprus: evidence of a highly polyphyletic and evolving infection. AIDS Res Hum Retroviruses. 2009;25:727-40.
-
(2009)
AIDS Res Hum Retroviruses
, vol.25
, pp. 727-740
-
-
Kousiappa, I.1
Vijver, D.A.2
Kostrikis, L.G.3
-
20
-
-
84877110083
-
Variability of HIV-1 genomes among children and adolescents from Sao Paulo, Brazil
-
Sanabani SS, Pessoa R, Soares de Oliveira AC, Martinez VP, Giret MT, de Menezes Succi RC, et al. Variability of HIV-1 genomes among children and adolescents from Sao Paulo, Brazil. PLoS One. 2013;8:e62552.
-
(2013)
PLoS One
, vol.8
, pp. e62552
-
-
Sanabani, S.S.1
Pessoa, R.2
Soares de Oliveira, A.C.3
Martinez, V.P.4
Giret, M.T.5
Menezes Succi, R.C.6
-
21
-
-
84866650953
-
The analysis of near full-length genome sequences of HIV type 1 subtype A viruses from Russia supports the monophyly of major intrasubtype clusters
-
Fernandez-Garcia A, Revilla A, Vazquez-de Parga E, Vinogradova A, Rakhmanova A, Karamov E, et al. The analysis of near full-length genome sequences of HIV type 1 subtype A viruses from Russia supports the monophyly of major intrasubtype clusters. AIDS Res Hum Retroviruses. 2012;28:1340-3.
-
(2012)
AIDS Res Hum Retroviruses
, vol.28
, pp. 1340-1343
-
-
Fernandez-Garcia, A.1
Revilla, A.2
Vazquez-de Parga, E.3
Vinogradova, A.4
Rakhmanova, A.5
Karamov, E.6
-
22
-
-
84861214061
-
Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection
-
Henn MR, Boutwell CL, Charlebois P, Lennon NJ, Power KA, Macalalad AR, et al. Whole genome deep sequencing of HIV-1 reveals the impact of early minor variants upon immune recognition during acute infection. PLoS Pathog. 2012;8:e1002529.
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002529
-
-
Henn, M.R.1
Boutwell, C.L.2
Charlebois, P.3
Lennon, N.J.4
Power, K.A.5
Macalalad, A.R.6
-
23
-
-
0023657622
-
Genome organization and transactivation of the human immunodeficiency virus type 2
-
Guyader M, Emerman M, Sonigo P, Clavel F, Montagnier L, Alizon M. Genome organization and transactivation of the human immunodeficiency virus type 2. Nature. 1987;326:662-9.
-
(1987)
Nature
, vol.326
, pp. 662-669
-
-
Guyader, M.1
Emerman, M.2
Sonigo, P.3
Clavel, F.4
Montagnier, L.5
Alizon, M.6
-
24
-
-
0035162494
-
Evolutionary and immunological implications of contemporary HIV-1 variation
-
Korber B, Gaschen B, Yusim K, Thakallapally R, Kesmir C, Detours V. Evolutionary and immunological implications of contemporary HIV-1 variation. Br Med Bull. 2001;58:19-42.
-
(2001)
Br Med Bull
, vol.58
, pp. 19-42
-
-
Korber, B.1
Gaschen, B.2
Yusim, K.3
Thakallapally, R.4
Kesmir, C.5
Detours, V.6
-
25
-
-
84868267075
-
The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus
-
van der Kuyl AC, Berkhout B. The biased nucleotide composition of the HIV genome: a constant factor in a highly variable virus. Retrovirology. 2012;9:92.
-
(2012)
Retrovirology
, vol.9
, pp. 92
-
-
Kuyl, A.C.1
Berkhout, B.2
-
26
-
-
80055055652
-
Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints
-
Snoeck J, Fellay J, Bartha I, Douek DC, Telenti A. Mapping of positive selection sites in the HIV-1 genome in the context of RNA and protein structural constraints. Retrovirology. 2011;8:87.
-
(2011)
Retrovirology
, vol.8
, pp. 87
-
-
Snoeck, J.1
Fellay, J.2
Bartha, I.3
Douek, D.C.4
Telenti, A.5
-
27
-
-
84880900435
-
Synonymous site conservation in the HIV-1 genome
-
Mayrose I, Stern A, Burdelova EO, Sabo Y, Laham-Karam N, Zamostiano R, et al. Synonymous site conservation in the HIV-1 genome. BMC Evol Biol. 2013;13:164.
-
(2013)
BMC Evol Biol
, vol.13
, pp. 164
-
-
Mayrose, I.1
Stern, A.2
Burdelova, E.O.3
Sabo, Y.4
Laham-Karam, N.5
Zamostiano, R.6
-
28
-
-
84888400011
-
HIV-1 Genetic Variability and Clinical Implications
-
Santoro MM, Perno CF. HIV-1 Genetic Variability and Clinical Implications. ISRN Microbiol. 2013;2013:481314.
-
(2013)
ISRN Microbiol
, vol.2013
, pp. 481314
-
-
Santoro, M.M.1
Perno, C.F.2
-
29
-
-
79952414942
-
Isolation W-UNfH, Characterisation: Global trends in molecular epidemiology of HIV-1 during 2000-2007
-
Hemelaar J, Gouws E, Ghys PD, Osmanov S. Isolation W-UNfH, Characterisation: Global trends in molecular epidemiology of HIV-1 during 2000-2007. AIDS. 2011;25:679-89.
-
(2011)
AIDS
, vol.25
, pp. 679-689
-
-
Hemelaar, J.1
Gouws, E.2
Ghys, P.D.3
Osmanov, S.4
-
30
-
-
84860843718
-
Protein intrinsic disorder as a flexible armor and a weapon of HIV-1
-
Xue B, Mizianty MJ, Kurgan L, Uversky VN. Protein intrinsic disorder as a flexible armor and a weapon of HIV-1. Cell Mol Life Sci. 2012;69:1211-59.
-
(2012)
Cell Mol Life Sci
, vol.69
, pp. 1211-1259
-
-
Xue, B.1
Mizianty, M.J.2
Kurgan, L.3
Uversky, V.N.4
-
31
-
-
84859393693
-
Immune-correlates analysis of an HIV-1 vaccine efficacy trial
-
Haynes BF, Gilbert PB, McElrath MJ, Zolla-Pazner S, Tomaras GD, Alam SM, et al. Immune-correlates analysis of an HIV-1 vaccine efficacy trial. Engl J Med. 2012;366:1275-86.
-
(2012)
Engl J Med
, vol.366
, pp. 1275-1286
-
-
Haynes, B.F.1
Gilbert, P.B.2
McElrath, M.J.3
Zolla-Pazner, S.4
Tomaras, G.D.5
Alam, S.M.6
-
32
-
-
84910007132
-
A stably expressed llama single-domain intrabody targeting Rev displays broad-spectrum anti-HIV activity
-
Boons E, Li G, Vanstreels E, Vercruysse T, Pannecouque C, Vandamme A-M, et al. A stably expressed llama single-domain intrabody targeting Rev displays broad-spectrum anti-HIV activity. Antiviral Research. 2014;112:91-102.
-
(2014)
Antiviral Research
, vol.112
, pp. 91-102
-
-
Boons, E.1
Li, G.2
Vanstreels, E.3
Vercruysse, T.4
Pannecouque, C.5
Vandamme, A.-M.6
-
34
-
-
44449137093
-
The microbial engines that drive Earth's biogeochemical cycles
-
Falkowski PG, Fenchel T, Delong EF. The microbial engines that drive Earth's biogeochemical cycles. Science. 2008;320:1034-9.
-
(2008)
Science
, vol.320
, pp. 1034-1039
-
-
Falkowski, P.G.1
Fenchel, T.2
Delong, E.F.3
-
35
-
-
0035663539
-
Evolution of functional diversity in the cupin superfamily
-
Dunwell JM, Culham A, Carter CE, Sosa-Aguirre CR, Goodenough PW. Evolution of functional diversity in the cupin superfamily. Trends Biochem Sci. 2001;26:740-6.
-
(2001)
Trends Biochem Sci
, vol.26
, pp. 740-746
-
-
Dunwell, J.M.1
Culham, A.2
Carter, C.E.3
Sosa-Aguirre, C.R.4
Goodenough, P.W.5
-
36
-
-
84887315193
-
On the role of aggregation prone regions in protein evolution, stability, and enzymatic catalysis: insights from diverse analyses
-
Buck PM, Kumar S, Singh SK. On the role of aggregation prone regions in protein evolution, stability, and enzymatic catalysis: insights from diverse analyses. PLoS Comput Biol. 2013;9:e1003291.
-
(2013)
PLoS Comput Biol
, vol.9
-
-
Buck, P.M.1
Kumar, S.2
Singh, S.K.3
-
37
-
-
84924341489
-
A new ensemble coevolution system for detecting HIV-1 protein coevolution
-
Li G, Theys K, Verheyen J, Pineda-Pena A, Khouri R, Piampongsant S, et al. A new ensemble coevolution system for detecting HIV-1 protein coevolution. Biol Direct. 2015;10:1.
-
(2015)
Biol Direct
, vol.10
, pp. 1
-
-
Li, G.1
Theys, K.2
Verheyen, J.3
Pineda-Pena, A.4
Khouri, R.5
Piampongsant, S.6
-
38
-
-
77954100808
-
Structure-function relationships of HIV-1 envelope sequence-variable regions refocus vaccine design
-
Zolla-Pazner S, Cardozo T. Structure-function relationships of HIV-1 envelope sequence-variable regions refocus vaccine design. Nat Rev Immunol. 2010;10:527-35.
-
(2010)
Nat Rev Immunol
, vol.10
, pp. 527-535
-
-
Zolla-Pazner, S.1
Cardozo, T.2
-
39
-
-
84855998457
-
Global landscape of HIV-human protein complexes
-
Jager S, Cimermancic P, Gulbahce N, Johnson JR, McGovern KE, Clarke SC, et al. Global landscape of HIV-human protein complexes. Nature. 2012;481:365-70.
-
(2012)
Nature
, vol.481
, pp. 365-370
-
-
Jager, S.1
Cimermancic, P.2
Gulbahce, N.3
Johnson, J.R.4
McGovern, K.E.5
Clarke, S.C.6
-
41
-
-
84875685505
-
Synthesized peptide inhibitors of HIV-1 gp41-dependent membrane fusion
-
He Y. Synthesized peptide inhibitors of HIV-1 gp41-dependent membrane fusion. Curr Pharm Des. 2013;19:1800-9.
-
(2013)
Curr Pharm Des
, vol.19
, pp. 1800-1809
-
-
He, Y.1
-
42
-
-
84861114271
-
Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity
-
Roberts KE, Cushing PR, Boisguerin P, Madden DR, Donald BR. Computational design of a PDZ domain peptide inhibitor that rescues CFTR activity. PLoS Comput Biol. 2012;8:e1002477.
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002477
-
-
Roberts, K.E.1
Cushing, P.R.2
Boisguerin, P.3
Madden, D.R.4
Donald, B.R.5
-
43
-
-
80054950510
-
Molecular dynamics simulations and drug discovery
-
Durrant JD, McCammon JA. Molecular dynamics simulations and drug discovery. BMC Biol. 2011;9:71.
-
(2011)
BMC Biol
, vol.9
, pp. 71
-
-
Durrant, J.D.1
McCammon, J.A.2
-
44
-
-
15744393651
-
Different from the HIV fusion inhibitor C34, the anti-HIV drug Fuzeon (T-20) inhibits HIV-1 entry by targeting multiple sites in gp41 and gp120
-
Liu S, Lu H, Niu J, Xu Y, Wu S, Jiang S. Different from the HIV fusion inhibitor C34, the anti-HIV drug Fuzeon (T-20) inhibits HIV-1 entry by targeting multiple sites in gp41 and gp120. J Biol Chem. 2005;280:11259-73.
-
(2005)
J Biol Chem
, vol.280
, pp. 11259-11273
-
-
Liu, S.1
Lu, H.2
Niu, J.3
Xu, Y.4
Wu, S.5
Jiang, S.6
-
46
-
-
84883187027
-
Broadly neutralizing antibodies and the search for an HIV-1 vaccine: the end of the beginning
-
Kwong PD, Mascola JR, Nabel GJ. Broadly neutralizing antibodies and the search for an HIV-1 vaccine: the end of the beginning. Nat Rev Immunol. 2013;13:693-701.
-
(2013)
Nat Rev Immunol
, vol.13
, pp. 693-701
-
-
Kwong, P.D.1
Mascola, J.R.2
Nabel, G.J.3
-
47
-
-
84909999714
-
HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes
-
Li G, Verheyen J, Theys K, Piampongsant S, Van Laethem K, Vandamme AM. HIV-1 Gag C-terminal amino acid substitutions emerging under selective pressure of protease inhibitors in patient populations infected with different HIV-1 subtypes. Retrovirology. 2014;11:79.
-
(2014)
Retrovirology
, vol.11
, pp. 79
-
-
Li, G.1
Verheyen, J.2
Theys, K.3
Piampongsant, S.4
Laethem, K.5
Vandamme, A.M.6
-
48
-
-
84885191190
-
Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools
-
Pineda-Pena AC, Faria NR, Imbrechts S, Libin P, Abecasis AB, Deforche K, et al. Automated subtyping of HIV-1 genetic sequences for clinical and surveillance purposes: Performance evaluation of the new REGA version 3 and seven other tools. Infect Genet Evol. 2013;19:337-48.
-
(2013)
Infect Genet Evol
, vol.19
, pp. 337-348
-
-
Pineda-Pena, A.C.1
Faria, N.R.2
Imbrechts, S.3
Libin, P.4
Abecasis, A.B.5
Deforche, K.6
-
49
-
-
84922394990
-
COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification
-
Struck D, Lawyer G, Ternes AM, Schmit JC, Bercoff DP. COMET: adaptive context-based modeling for ultrafast HIV-1 subtype identification. Nucleic Acids Res. 2015;42:e144.
-
(2015)
Nucleic Acids Res
, vol.42
-
-
Struck, D.1
Lawyer, G.2
Ternes, A.M.3
Schmit, J.C.4
Bercoff, D.P.5
-
50
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 2004;32:1792-7.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
51
-
-
74549125386
-
SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building
-
Gouy M, Guindon S, Gascuel O. SeaView version 4: A multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol. 2010;27:221-4.
-
(2010)
Mol Biol Evol
, vol.27
, pp. 221-224
-
-
Gouy, M.1
Guindon, S.2
Gascuel, O.3
-
53
-
-
63149177869
-
HIV-host interactions: a map of viral perturbation of the host system
-
Pinney JW, Dickerson JE, Fu W, Sanders-Beer BE, Ptak RG, Robertson DL. HIV-host interactions: a map of viral perturbation of the host system. AIDS. 2009;23:549-54.
-
(2009)
AIDS
, vol.23
, pp. 549-554
-
-
Pinney, J.W.1
Dickerson, J.E.2
Fu, W.3
Sanders-Beer, B.E.4
Ptak, R.G.5
Robertson, D.L.6
-
54
-
-
79951945491
-
How to optimally define optimal cytotoxic T lymphocyte epitopes in HIV infection
-
Llano A, Frahm N, Brander C. How to optimally define optimal cytotoxic T lymphocyte epitopes in HIV infection. HIV Mol Immunol. 2009;2009:3-24.
-
(2009)
HIV Mol Immunol
, vol.2009
, pp. 3-24
-
-
Llano, A.1
Frahm, N.2
Brander, C.3
-
55
-
-
77954287478
-
Protein annotation and modelling servers at University College London
-
Buchan DW, Ward SM, Lobley AE, Nugent TC, Bryson K, Jones DT. Protein annotation and modelling servers at University College London. Nucleic Acids Res. 2010;38:W563-8.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. W563-W568
-
-
Buchan, D.W.1
Ward, S.M.2
Lobley, A.E.3
Nugent, T.C.4
Bryson, K.5
Jones, D.T.6
-
57
-
-
44349192171
-
Prediction of disordered regions in proteins based on the meta approach
-
Ishida T, Kinoshita K. Prediction of disordered regions in proteins based on the meta approach. Bioinformatics. 2008;24:1344-8.
-
(2008)
Bioinformatics
, vol.24
, pp. 1344-1348
-
-
Ishida, T.1
Kinoshita, K.2
-
58
-
-
33745289067
-
Length-dependent prediction of protein intrinsic disorder
-
Peng K, Radivojac P, Vucetic S, Dunker AK, Obradovic Z. Length-dependent prediction of protein intrinsic disorder. BMC Bioinformatics. 2006;7:208.
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 208
-
-
Peng, K.1
Radivojac, P.2
Vucetic, S.3
Dunker, A.K.4
Obradovic, Z.5
-
59
-
-
75149164436
-
PreDisorder: ab initio sequence-based prediction of protein disordered regions
-
Deng X, Eickholt J, Cheng J. PreDisorder: ab initio sequence-based prediction of protein disordered regions. BMC Bioinformatics. 2009;10:436.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 436
-
-
Deng, X.1
Eickholt, J.2
Cheng, J.3
-
60
-
-
4444221565
-
UCSF Chimera-a visualization system for exploratory research and analysis
-
Pettersen EF, Goddard TD, Huang CC, Couch GS, Greenblatt DM, Meng EC, et al. UCSF Chimera-a visualization system for exploratory research and analysis. J Comput Chem. 2004;25:1605-12.
-
(2004)
J Comput Chem
, vol.25
, pp. 1605-1612
-
-
Pettersen, E.F.1
Goddard, T.D.2
Huang, C.C.3
Couch, G.S.4
Greenblatt, D.M.5
Meng, E.C.6
-
61
-
-
77957921373
-
A simple definition of structural regions in proteins and its use in analyzing interface evolution
-
Levy ED. A simple definition of structural regions in proteins and its use in analyzing interface evolution. J Mol Biol. 2010;403:660-70.
-
(2010)
J Mol Biol
, vol.403
, pp. 660-670
-
-
Levy, E.D.1
-
62
-
-
77949718257
-
FastTree 2-approximately maximum-likelihood trees for large alignments
-
Price MN, Dehal PS, Arkin AP. FastTree 2-approximately maximum-likelihood trees for large alignments. PLoS One. 2010;5:e9490.
-
(2010)
PLoS One
, vol.5
, pp. e9490
-
-
Price, M.N.1
Dehal, P.S.2
Arkin, A.P.3
-
63
-
-
15844406550
-
HyPhy: hypothesis testing using phylogenies
-
Pond SL, Frost SD, Muse SV. HyPhy: hypothesis testing using phylogenies. Bioinformatics. 2005;21:676-9.
-
(2005)
Bioinformatics
, vol.21
, pp. 676-679
-
-
Pond, S.L.1
Frost, S.D.2
Muse, S.V.3
-
64
-
-
0037326239
-
Impact of clade diversity on HIV-1 virulence, antiretroviral drug sensitivity and drug resistance
-
Spira S, Wainberg MA, Loemba H, Turner D, Brenner BG. Impact of clade diversity on HIV-1 virulence, antiretroviral drug sensitivity and drug resistance. J Antimicrob Chemother. 2003;51:229-40.
-
(2003)
J Antimicrob Chemother
, vol.51
, pp. 229-240
-
-
Spira, S.1
Wainberg, M.A.2
Loemba, H.3
Turner, D.4
Brenner, B.G.5
-
65
-
-
84924309766
-
HIV genome-wide diversity, interaction and coevolution
-
Doctoral thesis. University of Leuven, Faculty of medicine; 2014
-
Li G: HIV genome-wide diversity, interaction and coevolution. Doctoral thesis. University of Leuven, Faculty of medicine; 2014. (https://lirias.kuleuven.be/handle/123456789/460408 )
-
-
-
Li, G.1
|