메뉴 건너뛰기




Volumn 96, Issue , 2015, Pages 445-457

Prospective performance evaluation of selected common virtual screening tools. Case study: Cyclooxygenase (COX) 1 and 2

Author keywords

2D similarity based search; Cyclooxygenase; Docking; Method comparison; Pharmacophore modeling; Shape based modeling

Indexed keywords

6 METHYLTHIONAPROXEN; ACETAMINOSALOL; ACETPHENOLISATIN; ALCLOFENAC; ALDESULFONE; ALPHA METHYL 4 BIPHENYLACETIC ACID; AZOSEMIDE; CARPROFEN; CYCLOOXYGENASE 1; CYCLOOXYGENASE 1 INHIBITOR; CYCLOOXYGENASE 2; DIENESTROL; FENBUFEN; FLUNIXIN MEGLUMINE; FLURBIPROFEN; IBUPROFEN; INDOMETACIN; INDOPROFEN; KETOPROFEN; MECLOFENAMIC ACID; METHAPYRILENE; NORETYNODREL; PHENACETIN; PICOSULFATE SODIUM; PIRPROFEN; SACCHARIN; SALAZOSULFAPYRIDINE; SD 8381; TIAPROFENIC ACID; UNCLASSIFIED DRUG; UNINDEXED DRUG; PROSTAGLANDIN SYNTHASE INHIBITOR;

EID: 84928563915     PISSN: 02235234     EISSN: 17683254     Source Type: Journal    
DOI: 10.1016/j.ejmech.2015.04.017     Document Type: Article
Times cited : (19)

References (73)
  • 1
    • 84875150414 scopus 로고    scopus 로고
    • The holistic integration of virtual screening in drug discovery
    • Y. Tanrikulu B. Krüger E. Proschak The holistic integration of virtual screening in drug discovery Drug Discov. Today 18 2013 358 364
    • (2013) Drug Discov. Today , vol.18 , pp. 358-364
    • Tanrikulu, Y.1    Krüger, B.2    Proschak, E.3
  • 2
    • 0037235881 scopus 로고    scopus 로고
    • Virtual screening to enrich hit lists from high-throughput screening: A case study on small-molecule inhibitors of angiogenin
    • J.L. Jenkins R.Y. Kao R. Shapiro Virtual screening to enrich hit lists from high-throughput screening: a case study on small-molecule inhibitors of angiogenin Proteins 50 2003 81 93
    • (2003) Proteins , vol.50 , pp. 81-93
    • Jenkins, J.L.1    Kao, R.Y.2    Shapiro, R.3
  • 3
    • 78650750102 scopus 로고    scopus 로고
    • 3D pharmacophores as tools for activity profiling
    • D. Schuster 3D pharmacophores as tools for activity profiling Drug Discov. Today: Technol. 7 2010 e205 e211
    • (2010) Drug Discov. Today: Technol , vol.7 , pp. 205-e211
    • Schuster, D.1
  • 6
    • 77954264038 scopus 로고    scopus 로고
    • PharmMapper server: A web server for potential drug target identification using pharmacophore mapping approach
    • X. Liu S. Ouyang B. Yu Y. Liu K. Huang J. Gong S. Zheng Z. Li H. Li H. Jiang PharmMapper server: a web server for potential drug target identification using pharmacophore mapping approach Nucleic Acids Res. 38 2010 W609 W614
    • (2010) Nucleic Acids Res , vol.38 , pp. 609-W614
    • Liu, X.1    Ouyang, S.2    Yu, B.3    Liu, Y.4    Huang, K.5    Gong, J.6    Zheng, S.7    Li, Z.8    Li, H.9    Jiang, H.10
  • 7
    • 79551667504 scopus 로고    scopus 로고
    • In-silico ADME models: A general assessment of their utility in drug discovery applications
    • M.P. Gleeson A. Hersey S. Hannongbua In-silico ADME models: a general assessment of their utility in drug discovery applications Curr. Top. Med. Chem. 11 2011 358 381
    • (2011) Curr. Top. Med. Chem , vol.11 , pp. 358-381
    • Gleeson, M.P.1    Hersey, A.2    Hannongbua, S.3
  • 8
    • 85026053788 scopus 로고    scopus 로고
    • Glossary of terms used in medicinal chemistry (IUPAC Recommendations 1998)
    • G. Wermuth C.R. Ganellin P. Lindberg L.A. Mitscher Glossary of terms used in medicinal chemistry (IUPAC Recommendations 1998) Pure Appl. Chem. 70 1998 1129 1143
    • (1998) Pure Appl. Chem , vol.70 , pp. 1129-1143
    • Wermuth, G.1    Ganellin, C.R.2    Lindberg, P.3    Mitscher, L.A.4
  • 9
    • 84928578438 scopus 로고    scopus 로고
    • vROCS Version 3.0.0, OpenEye Scientific Software, Santa FE, NM
    • vROCS Version 3.0.0, OpenEye Scientific Software, Santa FE, NM, http://www.eyesopen.com.
  • 10
    • 33846212271 scopus 로고    scopus 로고
    • Comparison of shape-matching and docking as virtual screening tools
    • P.C. Hawkins A.G. Skillman A. Nicholls Comparison of shape-matching and docking as virtual screening tools J. Med. Chem. 50 2007 74 82
    • (2007) J. Med. Chem , vol.50 , pp. 74-82
    • Hawkins, P.C.1    Skillman, A.G.2    Nicholls, A.3
  • 12
    • 8844263008 scopus 로고    scopus 로고
    • Docking and scoring in virtual screening for drug discovery: Methods and applications
    • D.B. Kitchen H. Decornez J.R. Furr J. Bajorath Docking and scoring in virtual screening for drug discovery: methods and applications Nat. Rev. Drug Discov. 3 2004 935 949
    • (2004) Nat. Rev. Drug Discov , vol.3 , pp. 935-949
    • Kitchen, D.B.1    Decornez, H.2    Furr, J.R.3    Bajorath, J.4
  • 13
    • 13844320566 scopus 로고    scopus 로고
    • LigandScout: 3-D pharmacophores derived from protein-bound ligands and their use as virtual screening filters
    • G. Wolber T. Langer LigandScout: 3-D pharmacophores derived from protein-bound ligands and their use as virtual screening filters J. Chem. Inf. Model. 45 2005 160 169
    • (2005) J. Chem. Inf. Model , vol.45 , pp. 160-169
    • Wolber, G.1    Langer, T.2
  • 15
    • 0028854034 scopus 로고
    • Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation
    • G. Jones P. Willett R.C. Glen Molecular recognition of receptor sites using a genetic algorithm with a description of desolvation J. Mol. Biol. 245 1995 43 53
    • (1995) J. Mol. Biol , vol.245 , pp. 43-53
    • Jones, G.1    Willett, P.2    Glen, R.C.3
  • 16
    • 0031552362 scopus 로고    scopus 로고
    • Development and validation of a genetic algorithm for flexible docking
    • G. Jones P. Willett R.C. Glen A.R. Leach R. Taylor Development and validation of a genetic algorithm for flexible docking J. Mol. Biol. 267 1997 727 748
    • (1997) J. Mol. Biol , vol.267 , pp. 727-748
    • Jones, G.1    Willett, P.2    Glen, R.C.3    Leach, A.R.4    Taylor, R.5
  • 17
    • 77954274507 scopus 로고    scopus 로고
    • Evaluation of the performance of four molecular docking programs on a diverse set of protein-ligand complexes
    • X. Li Y. Li T. Cheng Z. Liu R. Wang Evaluation of the performance of four molecular docking programs on a diverse set of protein-ligand complexes J. Comput. Chem. 31 2010 2109 2125
    • (2010) J. Comput. Chem , vol.31 , pp. 2109-2125
    • Li, X.1    Li, Y.2    Cheng, T.3    Liu, Z.4    Wang, R.5
  • 18
    • 84903287174 scopus 로고    scopus 로고
    • Comparative assessment of scoring functions on an updated benchmark: 2. Evaluation methods and general results
    • Y. Li L. Han Z. Liu R. Wang Comparative assessment of scoring functions on an updated benchmark: 2. evaluation methods and general results J. Chem. Inf. Model. 54 2014 1717 1736
    • (2014) J. Chem. Inf. Model , vol.54 , pp. 1717-1736
    • Li, Y.1    Han, L.2    Liu, Z.3    Wang, R.4
  • 21
    • 84862011491 scopus 로고    scopus 로고
    • Protein-ligand-based pharmacophores: Generation and utility assessment in computational ligand profiling
    • J. Meslamani J. Li J. Sutter A. Stevens H.O. Bertrand D. Rognan Protein-ligand-based pharmacophores: generation and utility assessment in computational ligand profiling J. Chem. Inf. Model 2012 943 955
    • (2012) J. Chem. Inf. Model , pp. 943-955
    • Meslamani, J.1    Li, J.2    Sutter, J.3    Stevens, A.4    Bertrand, H.O.5    Rognan, D.6
  • 22
    • 79953667599 scopus 로고    scopus 로고
    • Novel neuraminidase inhibitors: Identification, biological evaluation and investigations of the binding mode
    • J. Kirchmair J.M. Rollinger K.R. Liedl N. Seidel A. Krumbholz M. Schmidtke Novel neuraminidase inhibitors: identification, biological evaluation and investigations of the binding mode Future Med. Chem. 3 2011 437 450
    • (2011) Future Med. Chem , vol.3 , pp. 437-450
    • Kirchmair, J.1    Rollinger, J.M.2    Liedl, K.R.3    Seidel, N.4    Krumbholz, A.5    Schmidtke, M.6
  • 24
    • 84893553641 scopus 로고    scopus 로고
    • Integrating docking scores, interaction profiles and molecular descriptors to improve the accuracy of molecular docking: Toward the discovery of novel Akt1 inhibitors
    • W. Zhan D. Li J. Che L. Zhang B. Yang Y. Hu T. Liu X. Dong Integrating docking scores, interaction profiles and molecular descriptors to improve the accuracy of molecular docking: toward the discovery of novel Akt1 inhibitors Eur. J. Med. Chem. 75 2014 11 20
    • (2014) Eur. J. Med. Chem , vol.75 , pp. 11-20
    • Zhan, W.1    Li, D.2    Che, J.3    Zhang, L.4    Yang, B.5    Hu, Y.6    Liu, T.7    Dong, X.8
  • 25
    • 84928543577 scopus 로고    scopus 로고
    • Discovery Studio, Version 3.5 Accelrys San Diego, CA, USA
    • Discovery Studio, Version 3.5 2012 Accelrys San Diego, CA, USA
    • (2012)
  • 26
    • 84919789130 scopus 로고    scopus 로고
    • Pharmacophore modelling for cyclooxygenase-1 and 2 inhibitors with LigandScout in comparison to discovery Studio
    • V. Temml T. Kaserer Z. Kutil P. Landa T. Vanek D. Schuster Pharmacophore modelling for cyclooxygenase-1 and 2 inhibitors with LigandScout in comparison to discovery Studio Future Med. Chem. 6 2014 1869 1881
    • (2014) Future Med. Chem , vol.6 , pp. 1869-1881
    • Temml, V.1    Kaserer, T.2    Kutil, Z.3    Landa, P.4    Vanek, T.5    Schuster, D.6
  • 28
    • 67249096968 scopus 로고    scopus 로고
    • A comparison of ligand based virtual screening methods and application to corticotropin releasing factor 1 receptor
    • G. Tresadern D. Bemporad T. Howe A comparison of ligand based virtual screening methods and application to corticotropin releasing factor 1 receptor J. Mol. Graph. Model. 27 2009 860 870
    • (2009) J. Mol. Graph. Model , vol.27 , pp. 860-870
    • Tresadern, G.1    Bemporad, D.2    Howe, T.3
  • 29
    • 80053906388 scopus 로고    scopus 로고
    • Chemical structural novelty: On-targets and off-targets
    • E.R. Yera A.E. Cleves A.N. Jain Chemical structural novelty: on-targets and off-targets J. Med. Chem. 54 2011 6771 6785
    • (2011) J. Med. Chem , vol.54 , pp. 6771-6785
    • Yera, E.R.1    Cleves, A.E.2    Jain, A.N.3
  • 30
    • 74849085203 scopus 로고    scopus 로고
    • Comparison of structure-and ligand-based virtual screening protocols considering hit list complementarity and enrichment factors
    • D.M. Krüger A. Evers Comparison of structure-and ligand-based virtual screening protocols considering hit list complementarity and enrichment factors ChemMedChem 5 2010 148 158
    • (2010) ChemMedChem , vol.5 , pp. 148-158
    • Krüger, D.M.1    Evers, A.2
  • 31
    • 78650689245 scopus 로고    scopus 로고
    • Comprehensive comparison of ligand-based virtual screening tools against the DUD data set reveals limitations of current 3D methods
    • V. Venkatraman V.I. Pérez-Nueno L. Mavridis D.W. Ritchie Comprehensive comparison of ligand-based virtual screening tools against the DUD data set reveals limitations of current 3D methods J. Chem. Inf. Model. 50 2010 2079 2093
    • (2010) J. Chem. Inf. Model , vol.50 , pp. 2079-2093
    • Venkatraman, V.1    Pérez-Nueno, V.I.2    Mavridis, L.3    Ritchie, D.W.4
  • 33
    • 85135598375 scopus 로고    scopus 로고
    • Efficient overlay of small molecules using 3-D pharmacophores
    • G. Wolber A. Dornhofer T. Langer Efficient overlay of small molecules using 3-D pharmacophores J. Comput. Aided Mol. Des. 20 2006 703 715
    • (2006) J. Comput. Aided Mol. des , vol.20 , pp. 703-715
    • Wolber, G.1    Dornhofer, A.2    Langer, T.3
  • 35
    • 84928576544 scopus 로고    scopus 로고
    • OMEGA Version 2.3.2, OpenEye Scientific Software, Sante FE, NM.
    • OMEGA Version 2.3.2, OpenEye Scientific Software, Sante FE, NM. http://www.eyesopen.com.
  • 36
    • 77951986384 scopus 로고    scopus 로고
    • Conformer generation with OMEGA: Algorithm and validation using high quality structures from the protein Databank and Cambridge structural Database
    • P.C. Hawkins A.G. Skillman G.L. Warren B.A. Ellingson M.T. Stahl Conformer generation with OMEGA: algorithm and validation using high quality structures from the protein Databank and Cambridge structural Database J. Chem. Inf. Model. 50 2010 572 584
    • (2010) J. Chem. Inf. Model , vol.50 , pp. 572-584
    • Hawkins, P.C.1    Skillman, A.G.2    Warren, G.L.3    Ellingson, B.A.4    Stahl, M.T.5
  • 37
    • 84869987609 scopus 로고    scopus 로고
    • Conformer generation with OMEGA: Learning from the data set and the analysis of failures
    • P.C. Hawkins A. Nicholls Conformer generation with OMEGA: learning from the data set and the analysis of failures J. Chem. Inf. Model. 52 2012 2919 2936
    • (2012) J. Chem. Inf. Model , vol.52 , pp. 2919-2936
    • Hawkins, P.C.1    Nicholls, A.2
  • 38
    • 14944348527 scopus 로고    scopus 로고
    • A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction
    • T.S. Rush J.A. Grant L. Mosyak A. Nicholls A shape-based 3-D scaffold hopping method and its application to a bacterial protein-protein interaction J. Med. Chem. 48 2005 1489 1495
    • (2005) J. Med. Chem , vol.48 , pp. 1489-1495
    • Rush, T.S.1    Grant, J.A.2    Mosyak, L.3    Nicholls, A.4
  • 40
    • 0035339905 scopus 로고    scopus 로고
    • Structural analysis of NSAID binding by prostaglandin H2 synthase: Time-dependent and time-independent inhibitors elicit identical enzyme conformations
    • B.S. Selinsky K. Gupta C.T. Sharkey P.J. Loll Structural analysis of NSAID binding by prostaglandin H2 synthase: time-dependent and time-independent inhibitors elicit identical enzyme conformations Biochemistry 40 2001 5172 5180
    • (2001) Biochemistry , vol.40 , pp. 5172-5180
    • Selinsky, B.S.1    Gupta, K.2    Sharkey, C.T.3    Loll, P.J.4
  • 41
    • 0028466540 scopus 로고
    • Comparison of automatic three-dimensional model builders using 639 X-ray structures
    • J. Sadowski J. Gasteiger G. Klebe Comparison of automatic three-dimensional model builders using 639 X-ray structures J. Chem. Inf. Comput. Sci. 34 1994 1000 1008
    • (1994) J. Chem. Inf. Comput. Sci , vol.34 , pp. 1000-1008
    • Sadowski, J.1    Gasteiger, J.2    Klebe, G.3
  • 42
    • 31044448069 scopus 로고    scopus 로고
    • Prostaglandin-H-synthase (PGHS)-1 and-2 microtiter assays for the testing of herbal drugs and in vitro inhibition of PGHS-isoenzyms by polyunsaturated fatty acids from Platycodi radix
    • E.A. Reininger R. Bauer Prostaglandin-H-synthase (PGHS)-1 and-2 microtiter assays for the testing of herbal drugs and in vitro inhibition of PGHS-isoenzyms by polyunsaturated fatty acids from Platycodi radix Phytomedicine 13 2006 164 169
    • (2006) Phytomedicine , vol.13 , pp. 164-169
    • Reininger, E.A.1    Bauer, R.2
  • 43
    • 0035237681 scopus 로고    scopus 로고
    • Top 200 medicines: Can new actions be discovered through computer-aided prediction?
    • V. Poroikov D. Akimov E. Shabelnikova D. Filimonov Top 200 medicines: can new actions be discovered through computer-aided prediction? SAR QSAR Environ. Res. 12 2001 327 344
    • (2001) SAR QSAR Environ. Res , vol.12 , pp. 327-344
    • Poroikov, V.1    Akimov, D.2    Shabelnikova, E.3    Filimonov, D.4
  • 44
    • 0346996357 scopus 로고    scopus 로고
    • Improving structure-based virtual screening by multivariate analysis of scoring data
    • M. Jacobsson P. Lidén E. Stjernschantz H. Boström U. Norinder Improving structure-based virtual screening by multivariate analysis of scoring data J. Med. Chem. 46 2003 5781 5789
    • (2003) J. Med. Chem , vol.46 , pp. 5781-5789
    • Jacobsson, M.1    Lidén, P.2    Stjernschantz, E.3    Boström, H.4    Norinder, U.5
  • 45
    • 0345735668 scopus 로고    scopus 로고
    • The 2.0 Å resolution crystal structure of prostaglandin H2 synthase-1: Structural insights into an unusual peroxidase
    • K. Gupta B.S. Selinsky C.J. Kaub A.K. Katz P.J. Loll The 2.0 Å resolution crystal structure of prostaglandin H2 synthase-1: structural insights into an unusual peroxidase J. Mol. Biol. 335 2004 503 518
    • (2004) J. Mol. Biol , vol.335 , pp. 503-518
    • Gupta, K.1    Selinsky, B.S.2    Kaub, C.J.3    Katz, A.K.4    Loll, P.J.5
  • 46
    • 33644848860 scopus 로고    scopus 로고
    • 2.0 A structure of prostaglandin H2 synthase-1 reconstituted with a manganese porphyrin cofactor
    • K. Gupta B.S. Selinsky P.J. Loll 2.0 A structure of prostaglandin H2 synthase-1 reconstituted with a manganese porphyrin cofactor Acta Crystallogr. Sect. D Biol. Crystallogr. 62 2006 151 156
    • (2006) Acta Crystallogr. Sect. D Biol. Crystallogr , vol.62 , pp. 151-156
    • Gupta, K.1    Selinsky, B.S.2    Loll, P.J.3
  • 49
    • 17144385534 scopus 로고    scopus 로고
    • Virtual screening workflow development guided by the g€Receiver operating Characteristicg€ curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4
    • N. Triballeau F. Acher I. Brabet J.-P. Pin H.-O. Bertrand Virtual screening workflow development guided by the g€Receiver operating Characteristicg€ curve approach. Application to high-throughput docking on metabotropic glutamate receptor subtype 4 J. Med. Chem. 48 2005 2534 2547
    • (2005) J. Med. Chem , vol.48 , pp. 2534-2547
    • Triballeau, N.1    Acher, F.2    Brabet, I.3    Pin, J.-P.4    Bertrand, H.-O.5
  • 50
    • 0346724714 scopus 로고    scopus 로고
    • The anti-inflammatory potential of berberine in vitro and in vivo
    • C.L. Kuo C.W. Chi T.Y. Liu The anti-inflammatory potential of berberine in vitro and in vivo Cancer Lett. 203 2004 127 137
    • (2004) Cancer Lett , vol.203 , pp. 127-137
    • Kuo, C.L.1    Chi, C.W.2    Liu, T.Y.3
  • 52
    • 67650461974 scopus 로고    scopus 로고
    • Fenbufen based 3-[5-(substituted aryl)-1,3,4-oxadiazol-2-yl]-1-(biphenyl-4-yl)propan-1-ones as safer antiinflammatory and analgesic agents
    • A. Husain A. Ahmad M.M. Alam M. Ajmal P. Ahuja Fenbufen based 3-[5-(substituted aryl)-1,3,4-oxadiazol-2-yl]-1-(biphenyl-4-yl)propan-1-ones as safer antiinflammatory and analgesic agents Eur. J. Med. Chem. 44 2009 3798 3804
    • (2009) Eur. J. Med. Chem , vol.44 , pp. 3798-3804
    • Husain, A.1    Ahmad, A.2    Alam, M.M.3    Ajmal, M.4    Ahuja, P.5
  • 53
    • 0037314763 scopus 로고    scopus 로고
    • Evaluation of the ability of carprofen and flunixin meglumine to inhibit activation of nuclear factor kappa B
    • C.E. Bryant B.A. Farnfield H.J. Janicke Evaluation of the ability of carprofen and flunixin meglumine to inhibit activation of nuclear factor kappa B Am. J. Vet. Res. 64 2003 211 215
    • (2003) Am. J. Vet. Res , vol.64 , pp. 211-215
    • Bryant, C.E.1    Farnfield, B.A.2    Janicke, H.J.3
  • 58
    • 68249100483 scopus 로고    scopus 로고
    • Differential sensitivity and mechanism of inhibition of COX-2 oxygenation of arachidonic acid and 2-arachidonoylglycerol by ibuprofen and mefenamic acid
    • J.J. Prusakiewicz K.C. Duggan C.A. Rouzer L.J. Marnett Differential sensitivity and mechanism of inhibition of COX-2 oxygenation of arachidonic acid and 2-arachidonoylglycerol by ibuprofen and mefenamic acid Biochemistry 48 2009 7353 7355
    • (2009) Biochemistry , vol.48 , pp. 7353-7355
    • Prusakiewicz, J.J.1    Duggan, K.C.2    Rouzer, C.A.3    Marnett, L.J.4
  • 59
    • 0016785451 scopus 로고
    • Inhibition of prostaglandin synthase by pirprofen. Studies with sheep seminal vesicle enzyme
    • E.C. Ku J.M. Wasvary Inhibition of prostaglandin synthase by pirprofen. Studies with sheep seminal vesicle enzyme Biochim. Biophys. Acta 384 1975 360 368
    • (1975) Biochim. Biophys. Acta , vol.384 , pp. 360-368
    • Ku, E.C.1    Wasvary, J.M.2
  • 61
    • 77956735860 scopus 로고    scopus 로고
    • Synthesis, anti-inflammatory activity, and in vitro antitumor effect of a novel class of cyclooxygenase inhibitors: 4-(aryloyl)phenyl methyl sulfones
    • Y. Harrak G. Casula J. Basset G. Rosell S. Plescia D. Raffa M.G. Cusimano R. Pouplana M.D. Pujol Synthesis, anti-inflammatory activity, and in vitro antitumor effect of a novel class of cyclooxygenase inhibitors: 4-(aryloyl)phenyl methyl sulfones J. Med. Chem. 53 2010 6560 6571
    • (2010) J. Med. Chem , vol.53 , pp. 6560-6571
    • Harrak, Y.1    Casula, G.2    Basset, J.3    Rosell, G.4    Plescia, S.5    Raffa, D.6    Cusimano, M.G.7    Pouplana, R.8    Pujol, M.D.9
  • 65
    • 34548200847 scopus 로고    scopus 로고
    • Structure-based drug design: Docking and scoring
    • R.T. Kroemer Structure-based drug design: docking and scoring Curr. Protein Pept. Sci. 8 2007 312 328
    • (2007) Curr. Protein Pept. Sci , vol.8 , pp. 312-328
    • Kroemer, R.T.1
  • 67
    • 33750991346 scopus 로고    scopus 로고
    • Benchmarking sets for molecular docking
    • N. Huang B.K. Shoichet J.J. Irwin Benchmarking sets for molecular docking J. Med. Chem. 49 2006 6789 6801
    • (2006) J. Med. Chem , vol.49 , pp. 6789-6801
    • Huang, N.1    Shoichet, B.K.2    Irwin, J.J.3
  • 68
    • 84880558073 scopus 로고    scopus 로고
    • Boosting virtual screening enrichments with data fusion: Coalescing hits from two-dimensional fingerprints, shape, and docking
    • G.M. Sastry V.S. Inakollu W. Sherman Boosting virtual screening enrichments with data fusion: coalescing hits from two-dimensional fingerprints, shape, and docking J. Chem. Inf. Model. 53 2013 1531 1542
    • (2013) J. Chem. Inf. Model , vol.53 , pp. 1531-1542
    • Sastry, G.M.1    Inakollu, V.S.2    Sherman, W.3
  • 69
    • 33748667774 scopus 로고    scopus 로고
    • Consensus scoring for protein-ligand interactions
    • M. Feher Consensus scoring for protein-ligand interactions Drug Discov. Today 11 2006 421 428
    • (2006) Drug Discov. Today , vol.11 , pp. 421-428
    • Feher, M.1
  • 70
    • 0034649618 scopus 로고    scopus 로고
    • Protein-based virtual screening of chemical databases. 1. Evaluation of different docking/scoring combinations
    • C. Bissantz G. Folkers D. Rognan Protein-based virtual screening of chemical databases. 1. Evaluation of different docking/scoring combinations J. Med. Chem. 43 2000 4759 4767
    • (2000) J. Med. Chem , vol.43 , pp. 4759-4767
    • Bissantz, C.1    Folkers, G.2    Rognan, D.3
  • 71
    • 33344465112 scopus 로고    scopus 로고
    • The use of consensus scoring in ligand-based virtual screening
    • J.C. Baber W.A. Shirley Y. Gao M. Feher The use of consensus scoring in ligand-based virtual screening J. Chem. Inf. Model. 46 2005 277 288
    • (2005) J. Chem. Inf. Model , vol.46 , pp. 277-288
    • Baber, J.C.1    Shirley, W.A.2    Gao, Y.3    Feher, M.4
  • 72
    • 33845995827 scopus 로고    scopus 로고
    • Enhancing the effectiveness of ligand-based virtual screening using data fusion
    • P. Willett Enhancing the effectiveness of ligand-based virtual screening using data fusion QSAR Comb. Sci. 25 2006 1143 1152
    • (2006) QSAR Comb. Sci , vol.25 , pp. 1143-1152
    • Willett, P.1
  • 73
    • 84858053438 scopus 로고    scopus 로고
    • Virtual screening data fusion using both structure-and ligand-based methods
    • F. Svensson A. Karlén C. Sköld Virtual screening data fusion using both structure-and ligand-based methods J. Chem. Inf. Model. 52 2011 225 232
    • (2011) J. Chem. Inf. Model , vol.52 , pp. 225-232
    • Svensson, F.1    Karlén, A.2    Sköld, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.