-
1
-
-
84892987894
-
Evolutionary transitions in individuality: insights from transposable elements
-
Ågren, J. A. 2014. Evolutionary transitions in individuality: insights from transposable elements. Trends Ecol. Evol. 29:90-96.
-
(2014)
Trends Ecol. Evol.
, vol.29
, pp. 90-96
-
-
Ågren, J.A.1
-
2
-
-
82955247986
-
Co-evolution between transposable elements and their hosts: a major factor in genome size evolution
-
Ågren, J. A., and S. I. Wright . 2011. Co-evolution between transposable elements and their hosts: a major factor in genome size evolution? Chromosome Res. 19:777-786.
-
(2011)
Chromosome Res.
, vol.19
, pp. 777-786
-
-
Ågren, J.A.1
Wright, S.I.2
-
3
-
-
84904275522
-
Mating system shifts and transposable element evolution in the plant genus Capsella
-
Ågren, J. A., W. Wang, D. Koenig, B. Neuffer, D. Weigel, and S. I. Wright . 2014. Mating system shifts and transposable element evolution in the plant genus Capsella. BMC Genomics 15:602.
-
(2014)
BMC Genomics
, vol.15
, pp. 602
-
-
Ågren, J.A.1
Wang, W.2
Koenig, D.3
Neuffer, B.4
Weigel, D.5
Wright, S.I.6
-
4
-
-
26944477031
-
Evolution of genome size in conifers
-
Ahuja, M. R., and D. B. Neale . 2005. Evolution of genome size in conifers. Silvae Genet. 54:126-137.
-
(2005)
Silvae Genet.
, vol.54
, pp. 126-137
-
-
Ahuja, M.R.1
Neale, D.B.2
-
5
-
-
16544377223
-
Genome size variation and evolution in Veronica
-
Albach, D. C., and J. Greilhuber . 2004. Genome size variation and evolution in Veronica. Ann. Bot. 94:897-911.
-
(2004)
Ann. Bot.
, vol.94
, pp. 897-911
-
-
Albach, D.C.1
Greilhuber, J.2
-
6
-
-
0034687755
-
Transposable elements in sexual and ancient asexual taxa. Proc. Natl. Acad. Sci
-
Arkhipova, I., and M. Meselson . 2000. Transposable elements in sexual and ancient asexual taxa. Proc. Natl. Acad. Sci. USA 97:14473-14477.
-
(2000)
USA
, vol.97
, pp. 14473-14477
-
-
Arkhipova, I.1
Meselson, M.2
-
7
-
-
12344315160
-
Deleterious transposable elements and the extinction of asexuals
-
Arkhipova, I.. 2005. Deleterious transposable elements and the extinction of asexuals. BioEssays 27:76-85.
-
(2005)
BioEssays
, vol.27
, pp. 76-85
-
-
Arkhipova, I.1
-
8
-
-
84927775898
-
-
Plant DNA C-values Database. Available via
-
Bennett, M. D., and I. J. Leitch . 2012. Plant DNA C-values Database. Available via http://data.kew.org/cvalues/.
-
(2012)
-
-
Bennett, M.D.1
Leitch, I.J.2
-
9
-
-
84892555212
-
Small, smaller, smallest: the origins and evolution of ancient dual symbioses in a phloem-feeding insect
-
Bennet, G., and N. Moran . 2013. Small, smaller, smallest: the origins and evolution of ancient dual symbioses in a phloem-feeding insect. Genome Biol. Evol. 5:1675-1688.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 1675-1688
-
-
Bennet, G.1
Moran, N.2
-
10
-
-
52549089919
-
Within-species variation in genome size
-
Biémont, C. 2008. Within-species variation in genome size. Heredity 101:297-298.
-
(2008)
Heredity
, vol.101
, pp. 297-298
-
-
Biémont, C.1
-
12
-
-
0026512282
-
Five major nuclear ribosomal repeats represent a large and variable fraction of the genomic DNA of Picea rubens and P. mariana
-
Bobola, M. S., D. E. Smith, and A. S. Klein . 1992. Five major nuclear ribosomal repeats represent a large and variable fraction of the genomic DNA of Picea rubens and P. mariana. Mol. Biol. Evol. 9:125-137.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 125-137
-
-
Bobola, M.S.1
Smith, D.E.2
Klein, A.S.3
-
13
-
-
11944264347
-
Phylogenetic comparative analysis: a modeling approach for adaptive evolution
-
Butler, M. A., and A. A. King . 2004. Phylogenetic comparative analysis: a modeling approach for adaptive evolution. Am. Nat. 164:683-695.
-
(2004)
Am. Nat.
, vol.164
, pp. 683-695
-
-
Butler, M.A.1
King, A.A.2
-
14
-
-
84855428748
-
The effects of deleterious mutations on evolution at linked sites
-
Charlesworth, B. 2012. The effects of deleterious mutations on evolution at linked sites. Genetics 190:5-22.
-
(2012)
Genetics
, vol.190
, pp. 5-22
-
-
Charlesworth, B.1
-
15
-
-
1842587751
-
Genome size: does bigger mean worse
-
Charlesworth, B., and N. Barton . 2004. Genome size: does bigger mean worse? Curr. Biol. 14:R233-R235.
-
(2004)
Curr. Biol.
, vol.14
, pp. R233-R235
-
-
Charlesworth, B.1
Barton, N.2
-
16
-
-
0022600495
-
The evolution of self-regulated transposition of transposable elements
-
Charlesworth, B., and C. H. Langley . 1986. The evolution of self-regulated transposition of transposable elements. Genetics 112:359-383.
-
(1986)
Genetics
, vol.112
, pp. 359-383
-
-
Charlesworth, B.1
Langley, C.H.2
-
17
-
-
84863007735
-
Maize HapMap2 identifies extant variation from a genome in flux
-
Chia, J. M., C. Song, P. J. Bradbury, D. Costich, N. de Leon, J. Doebley, R. J. Elshire, B. Gaut, L. Geller, J. C. Glaubitz, et al. 2012. Maize HapMap2 identifies extant variation from a genome in flux. Nat. Genet. 44:803-807.
-
(2012)
Nat. Genet.
, vol.44
, pp. 803-807
-
-
Chia, J.M.1
Song, C.2
Bradbury, P.J.3
Costich, D.4
de Leon, N.5
Doebley, J.6
Elshire, R.J.7
Gaut, B.8
Geller, L.9
Glaubitz, J.C.10
-
19
-
-
84966195152
-
Environmentally induced changes in ribosomal RNA cistron number in flax
-
Cullis, C. A. 1976. Environmentally induced changes in ribosomal RNA cistron number in flax. Heredity 36:73-79.
-
(1976)
Heredity
, vol.36
, pp. 73-79
-
-
Cullis, C.A.1
-
20
-
-
16544369474
-
Comment on "The Origins of Genome Complexity
-
Daubin, V., and N. A. Moran . 2004. Comment on "The Origins of Genome Complexity". Science 306:978.
-
(2004)
Science
, vol.306
, pp. 978
-
-
Daubin, V.1
Moran, N.A.2
-
21
-
-
84860640144
-
The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata
-
de la Chaux, N., T. Tsuchimatsu, K. S. Shimizu, and A. Wagner . 2012. The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata. Mobile DNA 3:2.
-
(2012)
Mobile DNA
, vol.3
, pp. 2
-
-
de la Chaux, N.1
Tsuchimatsu, T.2
Shimizu, K.S.3
Wagner, A.4
-
22
-
-
0001618395
-
Systematics of Oenothera section Oenothera subsection Oenothera (Onagraceae)
-
Dietrich, W., W. L. Wagner, and P. H. Raven . 1997. Systematics of Oenothera section Oenothera subsection Oenothera (Onagraceae). Syst. Bot. Monogr. 50:1-234.
-
(1997)
Syst. Bot. Monogr.
, vol.50
, pp. 1-234
-
-
Dietrich, W.1
Wagner, W.L.2
Raven, P.H.3
-
23
-
-
84878353357
-
Genome size variation in wild and cultivated maize along altitudinal gradients
-
Diez, C. M., B. S. Gaut, E. Meca, E. Scheinvar, S. Montes-Hernandez, L. E. Eguiarte, and M. I. Tenaillon . 2013. Genome size variation in wild and cultivated maize along altitudinal gradients. New Phytol. 199:264-276.
-
(2013)
New Phytol.
, vol.199
, pp. 264-276
-
-
Diez, C.M.1
Gaut, B.S.2
Meca, E.3
Scheinvar, E.4
Montes-Hernandez, S.5
Eguiarte, L.E.6
Tenaillon, M.I.7
-
24
-
-
84901381126
-
Three groups of transposable elements with contrasting copy number dynamics and host responses in the Maize (Zea mays ssp. mays) genome
-
Diez, C. M., E. Meca, M. I. Tenaillon, and B. S. Gaut . 2014. Three groups of transposable elements with contrasting copy number dynamics and host responses in the Maize (Zea mays ssp. mays) genome. PLoS Genet. 10:e1004298.
-
(2014)
PLoS Genet
, vol.10
, pp. e1004298
-
-
Diez, C.M.1
Meca, E.2
Tenaillon, M.I.3
Gaut, B.S.4
-
25
-
-
33645526445
-
Retrotransposon sequence variation in four asexual plant species
-
Docking, T. R., F. E. Saade, M. C. Elliott, and D. J. Schoen . 2006. Retrotransposon sequence variation in four asexual plant species. J. Mol. Evol. 62:375-387.
-
(2006)
J. Mol. Evol.
, vol.62
, pp. 375-387
-
-
Docking, T.R.1
Saade, F.E.2
Elliott, M.C.3
Schoen, D.J.4
-
26
-
-
33750465172
-
The fate of transposable elements in asexual populations
-
Dolgin, E. S., and B. Charlesworth . 2006. The fate of transposable elements in asexual populations. Genetics 174:817-827.
-
(2006)
Genetics
, vol.174
, pp. 817-827
-
-
Dolgin, E.S.1
Charlesworth, B.2
-
27
-
-
84875847924
-
Is junk DNA bunk? A critique of ENCODE
-
Doolittle, W. F. 2013. Is junk DNA bunk? A critique of ENCODE. Proc. Natl. Acad. Sci. USA 110:5294-5300.
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 5294-5300
-
-
Doolittle, W.F.1
-
28
-
-
84868550433
-
The C-value paradox, junk DNA and ENCODE
-
Eddy, S. R. 2012. The C-value paradox, junk DNA and ENCODE. Curr. Biol. 22:R898-R899.
-
(2012)
Curr. Biol.
, vol.22
, pp. R898-R899
-
-
Eddy, S.R.1
-
29
-
-
0001306776
-
Recombination system and population structure in Oenothera
-
Ellstrand, N. C., and D. A. Levin . 1980. Recombination system and population structure in Oenothera. Evolution 34:923-933.
-
(1980)
Evolution
, vol.34
, pp. 923-933
-
-
Ellstrand, N.C.1
Levin, D.A.2
-
30
-
-
84865790047
-
An integrated encyclopedia of DNA elements in the human genome
-
ENCODE Project Consortium. 2012. An integrated encyclopedia of DNA elements in the human genome. Nature 489:57-74.
-
(2012)
Nature
, vol.489
, pp. 57-74
-
-
-
31
-
-
0022203256
-
Phylogenies and the comparative method
-
Felsenstein, J. 1985. Phylogenies and the comparative method. Am. Nat. 125:1-15.
-
(1985)
Am. Nat.
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
32
-
-
84882826169
-
Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga
-
Flot, J. F., B. Hespeels, X. Li, B. Noel, I. Arkhipova, E. G. J. Danchin, A. Hejnol, B. Henrissat, R. Koszul, J. M. Aury, et al. Genomic evidence for ameiotic evolution in the bdelloid rotifer Adineta vaga. Nature 500:453-457.
-
Nature
, vol.500
, pp. 453-457
-
-
Flot, J.F.1
Hespeels, B.2
Li, X.3
Noel, B.4
Arkhipova, I.5
Danchin, E.G.J.6
Hejnol, A.7
Henrissat, B.8
Koszul, R.9
Aury, J.M.10
-
33
-
-
34447302579
-
Tribal relationships within Onagraceae inferred from PgiC sequences
-
Ford, V. S., and L. D. Gottlieb . 2007. Tribal relationships within Onagraceae inferred from PgiC sequences. Syst. Botany 32:348-356.
-
(2007)
Syst. Botany
, vol.32
, pp. 348-356
-
-
Ford, V.S.1
Gottlieb, L.D.2
-
34
-
-
0027134973
-
Muller's ratchet and mutational meltdowns
-
Gabriel, W., M. Lynch, and R. Bürger . 1993. Muller's ratchet and mutational meltdowns. Evolution 47:1744-1757.
-
(1993)
Evolution
, vol.47
, pp. 1744-1757
-
-
Gabriel, W.1
Lynch, M.2
Bürger, R.3
-
35
-
-
42549094998
-
Selection on major components of angiosperm genomes
-
Gaut, B. S., and J. Ross-Ibarra . 2008. Selection on major components of angiosperm genomes. Science 320:484-486.
-
(2008)
Science
, vol.320
, pp. 484-486
-
-
Gaut, B.S.1
Ross-Ibarra, J.2
-
36
-
-
84859949270
-
Genome evolution in outcrossing versus selfing versus asexual species
-
Glémin, S., and N. Galtier . 2012. Genome evolution in outcrossing versus selfing versus asexual species. Methods Mol. Biol. 855:311-335.
-
(2012)
Methods Mol. Biol
, vol.855
, pp. 311-335
-
-
Glémin, S.1
Galtier, N.2
-
37
-
-
84899156507
-
Translocations of chromosome end-segments and facultative heterochromatin promote meiotic ring formation in evening primroses
-
Golczyk, H., A. Massouh, and S. Greiner . 2014. Translocations of chromosome end-segments and facultative heterochromatin promote meiotic ring formation in evening primroses. Plant Cell 26:1280-1293.
-
(2014)
Plant Cell
, vol.26
, pp. 1280-1293
-
-
Golczyk, H.1
Massouh, A.2
Greiner, S.3
-
38
-
-
84875275808
-
On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE
-
Graur, D., Y. Zheng, N. Price, R. B. Azevedo, R. A. Zufall, and E. Elhaik . 2013. On the immortality of television sets: "function" in the human genome according to the evolution-free gospel of ENCODE. Genome Biol. Evol. 5:578-590.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 578-590
-
-
Graur, D.1
Zheng, Y.2
Price, N.3
Azevedo, R.B.4
Zufall, R.A.5
Elhaik, E.6
-
40
-
-
84927775897
-
-
Animal Genome Size Database. Available via
-
Gregory, T. R.. 2013. Animal Genome Size Database. Available via http://www.genomesize.com/.
-
(2013)
-
-
Gregory, T.R.1
-
41
-
-
84899156606
-
Growing evening primroses (Oenothera)
-
Greiner, S., and K. Köhl . 2014. Growing evening primroses (Oenothera). Front. Plant Sci. 5:38.
-
(2014)
Front. Plant Sci.
, vol.5
, pp. 38
-
-
Greiner, S.1
Köhl, K.2
-
42
-
-
37549027209
-
GEIGER: investigating evolutionary radiations
-
Harmon, L. J., J. T. Weir, C. D. Brock, R. E. Glor, and W. Challenger . 2008. GEIGER: investigating evolutionary radiations. Bioinformatics 24:129-131.
-
(2008)
Bioinformatics
, vol.24
, pp. 129-131
-
-
Harmon, L.J.1
Weir, J.T.2
Brock, C.D.3
Glor, R.E.4
Challenger, W.5
-
44
-
-
33749389724
-
Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
-
Hawkins, J. S., H. Kim, J. D. Nason, R. A. Wing, and J. F. Wendel . 2006. Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium. Genome Res. 16:1252-1261.
-
(2006)
Genome Res.
, vol.16
, pp. 1252-1261
-
-
Hawkins, J.S.1
Kim, H.2
Nason, J.D.3
Wing, R.A.4
Wendel, J.F.5
-
45
-
-
84864016021
-
Adaptive molecular evolution of a defence gene in sexual but not functionally asexual evening primroses
-
Hersch-Green, E. I., H. Myburg, and M. T. J. Johnson . 2012. Adaptive molecular evolution of a defence gene in sexual but not functionally asexual evening primroses. J. Evol. Biol. 25:1576-1586.
-
(2012)
J. Evol. Biol.
, vol.25
, pp. 1576-1586
-
-
Hersch-Green, E.I.1
Myburg, H.2
Johnson, M.T.J.3
-
46
-
-
0020447816
-
Selfish DNA: a sexually-transmitted nuclear parasite
-
Hickey, D. A. 1982. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 101:519-531.
-
(1982)
Genetics
, vol.101
, pp. 519-531
-
-
Hickey, D.A.1
-
47
-
-
84926641569
-
Recurrent loss of sex is associated with accumulation of deleterious mutations in Oenothera
-
Hollister, J. D., S. Greiner, W. Wang, J. Wang, Y. Zhang, G. K. Wong, S. I. Wright, and M. T. Johnson . 2015. Recurrent loss of sex is associated with accumulation of deleterious mutations in Oenothera. Mol. Biol. Evol. doi: 10.1093/molbev/msu345.
-
(2015)
Mol. Biol. Evol.
-
-
Hollister, J.D.1
Greiner, S.2
Wang, W.3
Wang, J.4
Zhang, Y.5
Wong, G.K.6
Wright, S.I.7
Johnson, M.T.8
-
48
-
-
0021623342
-
The evolution and ecology of permanent translocation heterozygotes
-
Holsinger, K. E., and N. C. Ellstrand . 1984. The evolution and ecology of permanent translocation heterozygotes. Am. Nat. 124: 48-71.
-
(1984)
Am. Nat.
, vol.124
, pp. 48-71
-
-
Holsinger, K.E.1
Ellstrand, N.C.2
-
49
-
-
79955468851
-
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
-
Hu, T. T., P. Pattyn, E. G. Bakker, J. Cao, J. F. Cheng, R. M. Clark, N. Fahlgren, J. A. Fawcett, J. Grimwood, H. Gundlach, et al. 2011. The Arabidopsis lyrata genome sequence and the basis of rapid genome size change. Nat. Genet. 43:476-481.
-
(2011)
Nat. Genet.
, vol.43
, pp. 476-481
-
-
Hu, T.T.1
Pattyn, P.2
Bakker, E.G.3
Cao, J.4
Cheng, J.F.5
Clark, R.M.6
Fahlgren, N.7
Fawcett, J.A.8
Grimwood, J.9
Gundlach, H.10
-
50
-
-
33747071530
-
The distribution of plant mating systems: study bias against obligately outcrossing species
-
Igić, B., and J. R. Kohn . 2006. The distribution of plant mating systems: study bias against obligately outcrossing species. Evolution 60:1098-1103.
-
(2006)
Evolution
, vol.60
, pp. 1098-1103
-
-
Igić, B.1
Kohn, J.R.2
-
51
-
-
70849088415
-
Plant sex and the evolution of plant defenses against herbivores
-
Johnson, M. T. J., S. D. Smith, and M. D. Rausher . 2009. Plant sex and the evolution of plant defenses against herbivores. Proc. Natl. Acad. Sci. USA 106:18079-18084.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, pp. 18079-18084
-
-
Johnson, M.T.J.1
Smith, S.D.2
Rausher, M.D.3
-
52
-
-
77953170428
-
Effects of plant sex on range distributions and allocation of reproduction
-
Johnson, M. T. J.. 2010. Effects of plant sex on range distributions and allocation of reproduction. New Phytol. 186:769-779.
-
(2010)
New Phytol.
, vol.186
, pp. 769-779
-
-
Johnson, M.T.J.1
-
53
-
-
80054922044
-
Loss of sexual recombination and segregation is associated with increased diversification in evening primroses
-
Johnson, M. T. J, R. FitzJohn, S. D. Smith, M. D. Rausher, and S. P. Otto . 2011. Loss of sexual recombination and segregation is associated with increased diversification in evening primroses. Evolution 65:3230-3240.
-
(2011)
Evolution
, vol.65
, pp. 3230-3240
-
-
Johnson, M.T.J.1
FitzJohn, R.2
Smith, S.D.3
Rausher, M.D.4
Otto, S.P.5
-
54
-
-
18844404205
-
Evolution of genome size in Brassicaceae
-
Johnston, J. S., A. E. Pepper, A. E. Hall, Z. J. Chen, G. Hodnett, J. Drabek, R. Lopez, and H. J. Price . 2005. Evolution of genome size in Brassicaceae. Ann. Bot. 95:229-235.
-
(2005)
Ann. Bot.
, vol.95
, pp. 229-235
-
-
Johnston, J.S.1
Pepper, A.E.2
Hall, A.E.3
Chen, Z.J.4
Hodnett, G.5
Drabek, J.6
Lopez, R.7
Price, H.J.8
-
55
-
-
23844525077
-
Repbase update, a database of eukaryotic repetitive elements
-
Jurka, J., V. V. Kapitonov, A. Pavlicek, P. Klonowski, O. Kohany, and J. Walichiewicz . 2005. Repbase update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res. 110:462-467.
-
(2005)
Cytogenet. Genome Res.
, vol.110
, pp. 462-467
-
-
Jurka, J.1
Kapitonov, V.V.2
Pavlicek, A.3
Klonowski, P.4
Kohany, O.5
Walichiewicz, J.6
-
56
-
-
84899633396
-
Defining functional DNA elements in the human genome
-
Kellis, M., B. Wold, M. P. Snyder, B. E. Bernstein, A. Kundaje, G. K. Marinov, L. D. Ward, E. Birney, G. E. Crawford, J. Dekker, et al. 2014. Defining functional DNA elements in the human genome. Proc. Natl. Acad. Sci. USA 111:6131-6138.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 6131-6138
-
-
Kellis, M.1
Wold, B.2
Snyder, M.P.3
Bernstein, B.E.4
Kundaje, A.5
Marinov, G.K.6
Ward, L.D.7
Birney, E.8
Crawford, G.E.9
Dekker, J.10
-
57
-
-
84930707859
-
Genome size diversity and evolution in land plants
-
in I. J. Leitch, J. Greilhuber, J. Dolezel, and J. F. Wendel, eds., Springer-Verlag, Vienna, Austria.
-
Leitch, I. J., and A. R. Leitch . 2013. Genome size diversity and evolution in land plants. in I. J. Leitch, J. Greilhuber, J. Dolezel, and J. F. Wendel, eds. Plant genome diversity, Vol. II. Springer-Verlag, Vienna, Austria.
-
(2013)
Plant genome diversity
, vol.2
-
-
Leitch, I.J.1
Leitch, A.R.2
-
58
-
-
1342266231
-
Paraphyly in tribe Onagreae: insights into phylogenetic relationships of Onagraceae based on nuclear and chloroplast sequence data. Syst
-
Levin, R. A., W. L. Wagner, P. C. Hoch, W. J. Hahn, A. Rodriguez, D. A. Baum, L. Katinas, E. A. Zimmer, and K. J. Sytsma . 2004. Paraphyly in tribe Onagreae: insights into phylogenetic relationships of Onagraceae based on nuclear and chloroplast sequence data. Syst. Botany 29:147-164.
-
(2004)
Botany
, vol.29
, pp. 147-164
-
-
Levin, R.A.1
Wagner, W.L.2
Hoch, P.C.3
Hahn, W.J.4
Rodriguez, A.5
Baum, D.A.6
Katinas, L.7
Zimmer, E.A.8
Sytsma, K.J.9
-
59
-
-
77649301731
-
The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata
-
Lockton, S, and B. S. Gaut . 2010. The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata. BMC Evol. Biol. 10:10.
-
(2010)
BMC Evol. Biol.
, vol.10
, pp. 10
-
-
Lockton, S.1
Gaut, B.S.2
-
60
-
-
84881026985
-
Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden
-
Long, Q., F. A. Rabanal, D. Meng, C. D. Huber, A. Farlow, A. Platzer, Q. Zhang, B. J Vilhjálmsson, A. Korte, V. Nizhynska, et al. 2013. Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden. Nat. Genet. 45:884-890.
-
(2013)
Nat. Genet.
, vol.45
, pp. 884-890
-
-
Long, Q.1
Rabanal, F.A.2
Meng, D.3
Huber, C.D.4
Farlow, A.5
Platzer, A.6
Zhang, Q.7
Vilhjálmsson, B.J.8
Korte, A.9
Nizhynska, V.10
-
62
-
-
79959819623
-
Statistical inference on the mechanisms of genome evolution
-
Lynch, M.. 2011. Statistical inference on the mechanisms of genome evolution. PLoS Genet. 7:e1001389.
-
(2011)
PLoS Genet
, vol.7
, pp. e1001389
-
-
Lynch, M.1
-
63
-
-
0345306751
-
The origins of genome complexity
-
Lynch, M., and J. S. Conery . 2003. The origins of genome complexity. Science 302:1401-1404.
-
(2003)
Science
, vol.302
, pp. 1401-1404
-
-
Lynch, M.1
Conery, J.S.2
-
64
-
-
33750939759
-
Response to comment on "The Origins of Genome Complexity
-
Lynch, M.. 2004. Response to comment on "The Origins of Genome Complexity". Science 306:978.
-
(2004)
Science
, vol.306
, pp. 978
-
-
Lynch, M.1
-
65
-
-
57849109041
-
The dynamic ups and downs of genome size evolution in Brassicaceae
-
Lysak, M. A., M. A. Koch, J. M. Beaulieu, A. Meister, and I. J. Leitch . 2009. The dynamic ups and downs of genome size evolution in Brassicaceae. Mol. Biol. Evol. 26:85-98.
-
(2009)
Mol. Biol. Evol.
, vol.26
, pp. 85-98
-
-
Lysak, M.A.1
Koch, M.A.2
Beaulieu, J.M.3
Meister, A.4
Leitch, I.J.5
-
66
-
-
32944455302
-
Phenotypic impacts of repetitive DNA in flowering plants
-
Meagher, T. R., and C. Vassiliadis . 2005. Phenotypic impacts of repetitive DNA in flowering plants. New Phytol. 168:71-80.
-
(2005)
New Phytol.
, vol.168
, pp. 71-80
-
-
Meagher, T.R.1
Vassiliadis, C.2
-
67
-
-
84905086449
-
Plant genome size variation: bloating and purging DNA. Brief Funct
-
Michael, T. P. 2014. Plant genome size variation: bloating and purging DNA. Brief Funct. Genomics 13:308-317.
-
(2014)
Genomics
, vol.13
, pp. 308-317
-
-
Michael, T.P.1
-
68
-
-
76549240988
-
The desoxyribonucleic acid content of animal cells and its evolutionary significance
-
Mirsky, A. E., and H. Ris . 1951. The desoxyribonucleic acid content of animal cells and its evolutionary significance. J. Gen. Physiol. 34:451-462.
-
(1951)
J. Gen. Physiol.
, vol.34
, pp. 451-462
-
-
Mirsky, A.E.1
Ris, H.2
-
69
-
-
0034945229
-
Transposable element number in mixed mating populations
-
Morgan, M. T. 2001. Transposable element number in mixed mating populations. Genet. Res. 77:261-275.
-
(2001)
Genet. Res.
, vol.77
, pp. 261-275
-
-
Morgan, M.T.1
-
70
-
-
50549201557
-
The relation of recombination to mutational advance
-
Muller, H. J. 1964. The relation of recombination to mutational advance. Mutat. Res. 1:2-9.
-
(1964)
Mutat. Res.
, vol.1
, pp. 2-9
-
-
Muller, H.J.1
-
71
-
-
84903203459
-
The genome of Eucalyptus grandis
-
Myburg, A. A., D. Grattapaglia, G. A. Tuskan, U. Hellsten, R. D. Hayes, J. Grimwood, J. Jenkins, E. Lindquist, H. Tice, D. Bauer, et al. 2014. The genome of Eucalyptus grandis. Nature 509:356-362.
-
(2014)
Nature
, vol.509
, pp. 356-362
-
-
Myburg, A.A.1
Grattapaglia, D.2
Tuskan, G.A.3
Hellsten, U.4
Hayes, R.D.5
Grimwood, J.6
Jenkins, J.7
Lindquist, E.8
Tice, H.9
Bauer, D.10
-
72
-
-
84863642420
-
Recombination drives vertebrate genome contraction
-
Nam, K., and H. Ellegren . 2012. Recombination drives vertebrate genome contraction. PLoS Genet. 8:e1002680.
-
(2012)
PLoS Genet
, vol.8
, pp. e1002680
-
-
Nam, K.1
Ellegren, H.2
-
73
-
-
77954854627
-
2010. Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data
-
Novak, P., P. Neumann, and J. Macas . 2010. Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinform. 11:378.
-
BMC Bioinform.
, vol.11
, pp. 378
-
-
Novak, P.1
Neumann, P.2
Macas, J.3
-
74
-
-
84875165671
-
RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads
-
Novak, P., P. Neumann, J. Pech, J. Steinhaisl, and J. Macas . 2013. RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads. Bioinformatics 29:792-793.
-
(2013)
Bioinformatics
, vol.29
, pp. 792-793
-
-
Novak, P.1
Neumann, P.2
Pech, J.3
Steinhaisl, J.4
Macas, J.5
-
75
-
-
34248144955
-
The mode and tempo of genome size evolution in eukaryotes
-
Oliver, M. J., D. Petrov, D. Ackerly, P. Falkowski, and O. M. Schofield . 2007. The mode and tempo of genome size evolution in eukaryotes. Genome Res. 17:594-601.
-
(2007)
Genome Res.
, vol.17
, pp. 594-601
-
-
Oliver, M.J.1
Petrov, D.2
Ackerly, D.3
Falkowski, P.4
Schofield, O.M.5
-
76
-
-
33747056328
-
Testing for different rates of continuous trait evolution using likelihood
-
O'Meara, B. C., C. Ane, M. J. Sanderson, and P. C. Wainwright . 2006. Testing for different rates of continuous trait evolution using likelihood. Evolution 60:922-933.
-
(2006)
Evolution
, vol.60
, pp. 922-933
-
-
O'Meara, B.C.1
Ane, C.2
Sanderson, M.J.3
Wainwright, P.C.4
-
77
-
-
0033613376
-
Inferring the historical patterns of biological evolution
-
Pagel, M. 1999. Inferring the historical patterns of biological evolution. Nature 401:877-884.
-
(1999)
Nature
, vol.401
, pp. 877-884
-
-
Pagel, M.1
-
78
-
-
84901596292
-
The case for junk DNA
-
Palazzo, A. F., and T. R. Gregory . 2014. The case for junk DNA. PLoS Genet. 10:e1004351.
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004351
-
-
Palazzo, A.F.1
Gregory, T.R.2
-
79
-
-
1042304216
-
APE: analyses of phylogenetics and evolution in R language
-
Paradis, E., J. Claude, and K. Strimmer . 2004. APE: analyses of phylogenetics and evolution in R language. Bioinformatics 20:289-290.
-
(2004)
Bioinformatics
, vol.20
, pp. 289-290
-
-
Paradis, E.1
Claude, J.2
Strimmer, K.3
-
81
-
-
0035058360
-
Evolution of genome size: new approaches to an old problem
-
Petrov, D. A. 2001. Evolution of genome size: new approaches to an old problem. Trends Genet. 17:23-28.
-
(2001)
Trends Genet.
, vol.17
, pp. 23-28
-
-
Petrov, D.A.1
-
82
-
-
33749392949
-
Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
-
Piegu, B., R. Guyot, N. Picault, A. Roulin, A. Sanyal, H. Kim, K. Collura, D. S. Brar, S. Jackson, R. A. Wing, et al. 2006. Doubling genome size without polyploidization: dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice. Genome Res. 16:1262-1269.
-
(2006)
Genome Res.
, vol.16
, pp. 1262-1269
-
-
Piegu, B.1
Guyot, R.2
Picault, N.3
Roulin, A.4
Sanyal, A.5
Kim, H.6
Collura, K.7
Brar, D.S.8
Jackson, S.9
Wing, R.A.10
-
83
-
-
0037310350
-
The correlation between rDNA copy number and genome size in eukaryotes
-
Prokopowich, C. D., T. R. Gregory, and T. J. Crease . 2003. The correlation between rDNA copy number and genome size in eukaryotes. Genome 46:48-50.
-
(2003)
Genome
, vol.46
, pp. 48-50
-
-
Prokopowich, C.D.1
Gregory, T.R.2
Crease, T.J.3
-
84
-
-
84863304598
-
-
R Foundation for Statistical Computing, Vienna, Austria.
-
R Development Core Team. 2013. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
-
(2013)
R: a language and environment for statistical computing
-
-
-
85
-
-
59449094031
-
Molecular marker systems for Oenothera genetics
-
Rauwolf, U., H. Golczyk, J. Meurer, R. G. Herrmann, and S. Greiner . 2008. Molecular marker systems for Oenothera genetics. Genetics 180:1289-1306.
-
(2008)
Genetics
, vol.180
, pp. 1289-1306
-
-
Rauwolf, U.1
Golczyk, H.2
Meurer, J.3
Herrmann, R.G.4
Greiner, S.5
-
86
-
-
79959316652
-
Uncoupling of sexual reproduction from homologous recombination in homozygous Oenothera species
-
Rauwolf, U., S. Greiner, J. Mráček, M. Rauwolf, H. Golczyk, V. Mohler, R. G. Herrmann, and J. Meurer . 2011. Uncoupling of sexual reproduction from homologous recombination in homozygous Oenothera species. Heredity 107:87-94.
-
(2011)
Heredity
, vol.107
, pp. 87-94
-
-
Rauwolf, U.1
Greiner, S.2
Mráček, J.3
Rauwolf, M.4
Golczyk, H.5
Mohler, V.6
Herrmann, R.G.7
Meurer, J.8
-
87
-
-
0000396911
-
A survey of reproductive-biology in Onagraceae
-
Raven, P. H. 1979. A survey of reproductive-biology in Onagraceae. New Zeal. J. Bot. 17:575-593.
-
(1979)
New Zeal. J. Bot.
, vol.17
, pp. 575-593
-
-
Raven, P.H.1
-
88
-
-
84867364321
-
phytools: an R package for phylogenetic comparative biology (and other things)
-
Revell, L. J. 2012. phytools: an R package for phylogenetic comparative biology (and other things). Methods Ecol. Evol. 3:217-223.
-
(2012)
Methods Ecol. Evol
, vol.3
, pp. 217-223
-
-
Revell, L.J.1
-
89
-
-
0022763649
-
Evaluating quantitative variation in the genome of Zea mays
-
Rivin, C. J., C. A. Cullis, and V. Walbot . 1986. Evaluating quantitative variation in the genome of Zea mays. Genetics 113:1009-1019.
-
(1986)
Genetics
, vol.113
, pp. 1009-1019
-
-
Rivin, C.J.1
Cullis, C.A.2
Walbot, V.3
-
90
-
-
77956492291
-
DNA transposon dynamics in populations of Daphnia pulex with and without sex
-
Schaack, S., E. J. Pritham, A. Wolf, and M. Lynch . 2010. DNA transposon dynamics in populations of Daphnia pulex with and without sex. Proc. R. Soc. B 277:2381-2387.
-
(2010)
Proc. R. Soc. B
, vol.277
, pp. 2381-2387
-
-
Schaack, S.1
Pritham, E.J.2
Wolf, A.3
Lynch, M.4
-
91
-
-
84914147115
-
Genome size variation affects song attractiveness in grasshoppers: evidence for sexual selection against large genomes
-
Schielzeth, H., C. Streitner, U. Lampe, A. Franzke, and K. Reinhold . 2014. Genome size variation affects song attractiveness in grasshoppers: evidence for sexual selection against large genomes. Evolution. 68:3629-3635.
-
(2014)
Evolution
, vol.68
, pp. 3629-3635
-
-
Schielzeth, H.1
Streitner, C.2
Lampe, U.3
Franzke, A.4
Reinhold, K.5
-
92
-
-
84879686532
-
The Capsella rubella genome and the genomic consequences of rapid mating system evolution
-
Slotte, T., K. M. Hazzouri, J. A. Ågren, D. Koenig, F. Maumus, Y. L. Guo, K. Steige, A. E. Platts, J. S. Escobar, L. K. Newman, et al. 2013. The Capsella rubella genome and the genomic consequences of rapid mating system evolution. Nat. Genet. 45:831-835.
-
(2013)
Nat. Genet.
, vol.45
, pp. 831-835
-
-
Slotte, T.1
Hazzouri, K.M.2
Ågren, J.A.3
Koenig, D.4
Maumus, F.5
Guo, Y.L.6
Steige, K.7
Platts, A.E.8
Escobar, J.S.9
Newman, L.K.10
-
93
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. 2006. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22:2688-2690.
-
(2006)
Bioinformatics
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
95
-
-
84880383379
-
Transposon fingerprinting using low coverage whole genome shotgun sequencing in Cacao (Theobroma cacao L.) and related species
-
Sveinsson, S., N. Gill, N. C. Kane, and Q. Cronk . 2013. Transposon fingerprinting using low coverage whole genome shotgun sequencing in Cacao (Theobroma cacao L.) and related species. BMC Genomics. 14:502.
-
(2013)
BMC Genomics.
, vol.14
, pp. 502
-
-
Sveinsson, S.1
Gill, N.2
Kane, N.C.3
Cronk, Q.4
-
96
-
-
77955273950
-
A triptych of the evolution of plant transposable elements
-
Tenaillon, M. I., J. D. Hollister, and B. S. Gaut . 2010. A triptych of the evolution of plant transposable elements. Trends Plant Sci. 15:471-478.
-
(2010)
Trends Plant Sci.
, vol.15
, pp. 471-478
-
-
Tenaillon, M.I.1
Hollister, J.D.2
Gaut, B.S.3
-
97
-
-
79960095966
-
Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians
-
Tenaillon, M. I., M. B. Hufford, B. S. Gaut, and J. Ross-Ibarra . 2011. Genome size and transposable element content as determined by high-throughput sequencing in maize and Zea luxurians. Genome Biol. Evol. 3:219-229.
-
(2011)
Genome Biol. Evol.
, vol.3
, pp. 219-229
-
-
Tenaillon, M.I.1
Hufford, M.B.2
Gaut, B.S.3
Ross-Ibarra, J.4
-
98
-
-
1942424155
-
B chromosomes and genome size in flowering plants
-
Trivers, R., A. Burt, and B. G. Palestis . 2004. B chromosomes and genome size in flowering plants. Genome 47:1-8.
-
(2004)
Genome
, vol.47
, pp. 1-8
-
-
Trivers, R.1
Burt, A.2
Palestis, B.G.3
-
99
-
-
0035107806
-
Sex among flowers: the distribution of plant mating systems
-
Vogler, D. W., and S. Kalisz . 2001. Sex among flowers: the distribution of plant mating systems. Evolution 55:202-204.
-
(2001)
Evolution
, vol.55
, pp. 202-204
-
-
Vogler, D.W.1
Kalisz, S.2
-
101
-
-
77957326306
-
Did genetic drift drive increases in genome complexity
-
Whitney, K. D., and T. Garland . 2010. Did genetic drift drive increases in genome complexity? PLoS Genet. 6:e1001080.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001080
-
-
Whitney, K.D.1
Garland, T.2
-
102
-
-
77957371765
-
A role for nonadaptive processes in plant genome size evolution
-
Whitney, K. D., E. J. Baack, J. L. Hamrick, M. J. W. Godt, B. C. Barringer, M. D. Bennett, C. G. Eckert, C. Goodwillie, S. Kalisz, I. J. Leitch, et al. 2010. A role for nonadaptive processes in plant genome size evolution? Evolution 64:2097-2109.
-
(2010)
Evolution
, vol.64
, pp. 2097-2109
-
-
Whitney, K.D.1
Baack, E.J.2
Hamrick, J.L.3
Godt, M.J.W.4
Barringer, B.C.5
Bennett, M.D.6
Eckert, C.G.7
Goodwillie, C.8
Kalisz, S.9
Leitch, I.J.10
-
103
-
-
79959824612
-
Drift and genome complexity revisited
-
Whitney, K. D., B. Boussau, E. J. Baack, and T. Garland . 2011. Drift and genome complexity revisited. PLoS Genet. 7:e1002092.
-
(2011)
PLoS Genet.
, vol.7
, pp. e1002092
-
-
Whitney, K.D.1
Boussau, B.2
Baack, E.J.3
Garland, T.4
-
104
-
-
38949146993
-
The dynamic nature of apomixis in the angiosperms
-
Whitton, J., C. J. Sears, E. J. Baack, and S. P. Otto . 2008. The dynamic nature of apomixis in the angiosperms. Int. J. Plant Sci. 169:169-182.
-
(2008)
Int. J. Plant Sci.
, vol.169
, pp. 169-182
-
-
Whitton, J.1
Sears, C.J.2
Baack, E.J.3
Otto, S.P.4
-
105
-
-
81355161515
-
Sizing up Arabidopsis genome evolution
-
Wright, S. I., and J. A. Ågren . 2011. Sizing up Arabidopsis genome evolution. Heredity (Edinb). 107:509-510.
-
(2011)
Heredity (Edinb).
, vol.107
, pp. 509-510
-
-
Wright, S.I.1
Ågren, J.A.2
-
106
-
-
0033288975
-
Transposon dynamics and the breeding system
-
Wright, S. I., and D. J. Schoen . 1999. Transposon dynamics and the breeding system. Genetica 107:139-148.
-
(1999)
Genetica
, vol.107
, pp. 139-148
-
-
Wright, S.I.1
Schoen, D.J.2
-
107
-
-
38949184874
-
Genomic consequences of outcrossing and selfing in plants
-
Wright, S. I., R. W. Ness, J. P. Foxe, and S. C. H. Barrett . 2008. Genomic consequences of outcrossing and selfing in plants. Int. J. Plant Sci. 169:105-118.
-
(2008)
Int. J. Plant Sci.
, vol.169
, pp. 105-118
-
-
Wright, S.I.1
Ness, R.W.2
Foxe, J.P.3
Barrett, S.C.H.4
-
108
-
-
0029818881
-
Sex and the spread of retrotransposon Ty3 in experimental populations of Saccharomyces cerevisiae
-
Zeyl, C., G. Bell, and D. M. Green . 1996. Sex and the spread of retrotransposon Ty3 in experimental populations of Saccharomyces cerevisiae. Genetics 143:1567-1577.
-
(1996)
Genetics
, vol.143
, pp. 1567-1577
-
-
Zeyl, C.1
Bell, G.2
Green, D.M.3
-
109
-
-
25144461143
-
First nuclear DNA amounts in more than 300 angiosperms
-
Zonneveld, B. J., I. J. Leitch, and M. D. Bennett . 2005. First nuclear DNA amounts in more than 300 angiosperms. Ann. Bot. 96:229-244.
-
(2005)
Ann. Bot.
, vol.96
, pp. 229-244
-
-
Zonneveld, B.J.1
Leitch, I.J.2
Bennett, M.D.3
|