RepeatExplorer: A Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

Bioinformatics

Volumn 29, Issue 6, 2013, Pages 792-793

  Novák, Petr ^a   Neumann, Pavel ^a   Pech, Jiří ^a   Steinhaisl, Jaroslav ^a   MacAs, Jiří ^a  

^a INSTITUTE OF PLANT MOLECULAR BIOLOGY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ALGORITHM; ARTICLE; CHEMISTRY; CLUSTER ANALYSIS; COMPUTER PROGRAM; DNA SEQUENCE; EUKARYOTE; GENETICS; GENOME; HIGH THROUGHPUT SEQUENCING; INTERNET; NUCLEOTIDE REPEAT; PHYLOGENY;

ALGORITHMS; CLUSTER ANALYSIS; DNA; EUKARYOTA; GENOME; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; INTERNET; PHYLOGENY; REPETITIVE SEQUENCES, NUCLEIC ACID; SEQUENCE ANALYSIS, DNA; SOFTWARE;

EID: 84875165671     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt054     Document Type: Article

References (5)

1. Blondel,V.D. et al. (2008) Fast unfolding of communities in large networks. J. Stat. Mech., 10, P10008.
2. Goecks,J. et al. (2010) Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol., 11, R86.
3. Macas,J. et al. (2011) Next generation sequencing-based analysis of repetitive DNA in the model dioecious plant Silene latifolia. PLoS One, 6, e27335.
4. Nova k,P. et al. (2010) Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data. BMC Bioinformatics, 11, 378.
5. Pagan,H.J.T. et al. (2012) Survey sequencing reveals elevated DNA transposon activity, novel elements, and variation in repetitive landscapes among bats. Genome Biol. Evol., 4, 575-585.