Transposon dynamics and the breeding system

Genetica

Volumn 107, Issue 1-3, 1999, Pages 139-148

  Wright, Stephen I ^a   Schoen, Daniel J ^a  

^a MCGILL UNIVERSITY   (Canada)

Author keywords

Deleterious mutation; Ectopic exchange; Insertion polymorphism; Mating system; Transposable elements

Indexed keywords

ILEX COOKII;

ARTICLE; BREEDING; PROBABILITY; TRANSPOSON;

BREEDING; DNA TRANSPOSABLE ELEMENTS; PROBABILITY;

EID: 0033288975     PISSN: 00166707     EISSN: None     Source Type: Journal    
DOI: 10.1023/a:1003953126700     Document Type: Article

References (42)

1. Batzer, M., S.S. Arcot, J.W. Phinney, M. Alegria-Hartman, D.H. Kass, S.M. Milligan, C. Klimpton, P. Gill, M. Hochmeister, RA. Ioannou, R.J. Herrera, D.A. Boudreau, W.D. Scheer, B.J.B. Keats, P.L. Denninger & M. Stoneking, 1996. Genetic variation of recent Alu insertions in human populations. J. Mol. Evol. 42: 22-29.
2. Biemont, C., A. Tsitrone, C. Vieira & C. Hoogland, 1997. Transposable element distribution in Drosophila. Genetics 147: 1997-1999.
3. Blondon, F., D. Marie, S. Brown & A. Kondorosi, 1994. Genome size and base composition in Medicago sativa and M. truncatula species. Genome 37: 264-270.
4. Brookfield, J.F.Y., 1996. Models of the spread of non-autonomous selfish transposable elements when transposition and fitness are coupled. Genet. Res. 67: 199-210.
5. Brookfield, J.F.Y. & R.M. Badge, 1997. Population genetics models of transposable elements. Genetics 109: 281-294.
6. Burt, A. & R. Trivers, 1998. Selfish DNA and breeding system in flowering plants. Proc. Roy. Soc. Lond. B 265: 141-146.
7. Charlesworth, B. & N. Barton, 1996. Recombination load is associated with selection for increased recombination. Genet. Res. 67: 27-41.
8. Charlesworth, B. & D. Charlesworth, 1983. The population dynam ics of transposable elements. Genet. Res. 42: 1-27.
9. Charlesworth, B. & D. Charlesworth, 1995. Transposable elements in inbreeding and outbreeding populations. Genetics 140: 415-417.
10. Charlesworth, B. & C.H. Langley, 1986. The evolution of self-regulated transposition of transposable elements. Genetics 112: 359-383.
11. Charlesworth, B. & C.H. Langley, 1989. The population genetics of Drosophila transposable elements. Ann. Rev. Genet. 23: 251-287.
12. Charlesworth, B., C.H. Langley & P. Sniegowski. 1997. Transposable element distributions in Drosophila. Genetics 147: 1993-1995.
13. Charlesworth, B., M.T. Morgan & D. Charlesworth, 1993. The effect of deleterious mutations on neutral molecular variation. Genetics 134: 1289-1303.
14. Charlesworth, B., P. Sniegowski & W. Stephan, 1994. The evolutionary dynamics of repetitive DNA in eukaryotes. Nature 371: 215-220.
15. Charlesworth, D., M.T. Morgan & B. Charlesworth, 1990. Inbreeding depression, genetic load, and the evolution of outcrossing rates in a multilocus system with no linkage. Evolution 44: 1469-1489.
16. Cherrier, B., F. Foucher, E. Kondoros, Y. d'Aubenton, C. Thermes, A. Kondorosi & P. Ratet, 1999. Bigfoot: a new family of MITE elements characterized from the Medicago genus. The Plant Journal 18(4): 431-441.
17. Dooner, H.K. & A. Belachew, 1991. Chromosome breakage by pairs of closely linked transposable elements of the Ac/Ds family in maize. Genetics 129: 855-862.
18. Flavell, A.J., M.R. Knox, S.R. Pearce, T.H.N. Ellis, 1998. Retrotransposon-based insertion polymorphisms (RBIP) for high throughput marker analysis. Plant J. 16: 643-650.
19. Hartl, D.L., A.R. Lohe & E.R. Lozovskaya, 1997. Modern thoughts on an ancient marinere: function, evolution, regulation. Ann. Rev. Genet. 31: 337-358.
20. Hickey, D.A., 1982. Selfish DNA: a sexually-transmitted nuclear parasite. Genetics 101: 519-531.
21. Hoogland, C. & C. Biemont, 1996. Chromosomal distribution of transposable elements in Drosophila melanogaster: test of the ectopic recombination model for the maintenance of insertion site number. Genetics 144: 197-204.
22. Kondrashov, A., 1985. Deleterious mutations as an evolutionary factor. Facultative apomixis and selfing. Genetics 111: 635-653.
23. Kumar, A, S.R. Pearce, K. McLean, G. Harrison, J.S. Heslop-Harrison, R. Waugh & A.J. Flavell, 1997. The Ty1-copia group of retrotransposons in plants: genomic organisation, evolution, and use as molecular markers. Genetica 100(1-3): 205-217.
24. Langley, C.H., E.A. Montgomery, R.R. Hudson, N.I. Kaplan & B. Charlesworth, 1988. On the role of unequal exchange in the containment of transposable element copy number. Genet. Res. 52: 223-235.
25. Leutwiler, L.S., B.R. Hough-Evans & E.M. Meyerovitz, 1984. The DNA of Arabidopsis thaliana. Mol. Gen. Genet. 194: 15-23.
26. Lewontin, R.C., 1974. The Genetic Basis of Evolutionary Change. Columbia University Press, N.Y.
27. Maynard Smith, J. & J. Haigh, 1974. The hitch-hiking effect of a favourable gene. Genet. Res. 231: 1114-1116.
28. Montgomery, E.A., B. Charlesworth & C.H. Langley, 1987. A test for the role of natural selection in the stabilization of transposable element copy number in a population of Drosophila melanogaster. Genet. Res. 49: 31-41.
29. Montgomery, E.A., S.-M. Huang, C.H. Langley & B.H. Judd, 1991. Chromosome rearrangement by ectopic recombination in Drosophila melanogaster: genome structure and evolution. Genetics 129: 1085-1098.
30. Muller, H.J., 1964. The relation of recombination to mutational advance. Mut. Res. 1: 2-9.
31. Murata, S.N., N. Takasaki, M. Saitoh, H. Tachida & N. Okada, 1996. Details of retrotranspositional genome dynamics that provide a rationale for a genetic division: the distinct branching of all the pacific salmon and trout (Oncorhynchus) from the atlantic salmon and trout (Salmo). Genetics 142: 915-926.
32. Nuzhdin, S.V., E.G. Pasyokova & T.F.C. Mackay, 1996. Positive association between copia transposition rate and copy number in D. molenogaster. Proc. Roy. Soc. Lond. B. 263: 823-831.
33. Pearce, S.R., G. Harrison, D. Li, J. Heslop-Harrison, A. Kumar & A.J. Flavell, 1996. The Ty1-copia group retrotransposons in Vicia species: copy number, sequence heterogeneity and chromosomal localisation. Mol. Gen. Genet. 250(3): 305-315.
34. SanMiguel, P., B.S. Gaut, A. Tikhonov, Y. Nakajima & J.L. Bennetzen, 1998. The paleontology of intergene retrotransposons of maize. Nat. Genet. 20: 43-45.
35. SanMiguel, P., A. Tikhonov, J. Young-Kwan, N. Motchoulskaia, D. Zakharov, A. Melake-Berhan, P.S. Springer, K.J. Edwards, M. Lee, Z. Avramova & J.L. Bennetzen, 1996. Nested retrotransposons in the intergenic regions of the maize genome. Science 274: 765-768.
36. Tajima, F., 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 123: 585-593.
37. Takasaki, N., T. Yamaki, M. Hamada, L. Park & N. Okada, 1997. The salmon SmaI family of short interspersed reptitive elements (SINEs): interspecific and intraspecific variation of the insertions of SINEs in the genomes of chum and pink salmon. Genetics 146: 369-380.
38. Van den Broeck, D.T. Maes, M. Sauer, J. Zetho, P. De Keukeleire, M. D'Hauw, M. Van Montagu, T. Gerats, 1998. Transposon display identifies individual transposable elements in high copy number lines. Plant J. 13: 121-129.
39. Vieira, C. & C. Biemont, 1996. Geographical variation in insertion site number of retrotransposon 412 in Drosophila simulans. J. Mol. Evol. 42(2): 443-451.
40. Waugh, R., K. McLean, A.J. Flavell, S.R. Pearce, A. Kumar, B.T. Thomas & W. Powell, 1997. Genetic distribution of BARE-1 retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms. Mol. Gen. Genet. 253: 687-694.
41. Zeyl, C., G. Bell & D.M. Green, 1996. Sex and the spread of retrotransposon Ty3 in experimental populations of Saccharomyces cerevisiae. Genetics 143: 1567-1577.
42. Zhang, J. & T. Peterson, 1999. Genome rearrangements by nonlinear transposons in maize. Genetics 153: 1403-1410.