메뉴 건너뛰기




Volumn 6, Issue MAR, 2015, Pages

Insights into the environmental reservoir of pathogenic Vibrio parahaemolyticus using comparative genomics

Author keywords

Environment; Genomics; O3:K6; Phylogenomics; Vibrio parahaemolyticus

Indexed keywords

ARTICLE; BACTERIAL GENE; BACTERIAL VIRULENCE; BACTERIOPHAGE; BACTERIUM ISOLATION; COMPARATIVE GENOMICS; GENE IDENTIFICATION; GENE SEQUENCE; GENETIC SIMILARITY; GENETIC VARIABILITY; GENOMIC ISLAND; GENOMICS; HOUSEKEEPING GENE; MAXIMUM LIKELIHOOD METHOD; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLASMID; POLYMERASE CHAIN REACTION; PULSED FIELD GEL ELECTROPHORESIS; RESERVOIR; SEROTYPING; UNINDEXED SEQUENCE; VIBRIO PARAHAEMOLYTICUS;

EID: 84927137083     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2015.00204     Document Type: Article
Times cited : (26)

References (81)
  • 2
    • 79551599525 scopus 로고    scopus 로고
    • Mugsy: fast multiple alignment of closely related whole genomes
    • Angiuoli, S. V., and Salzberg, S. L. (2011). Mugsy: fast multiple alignment of closely related whole genomes. Bioinformatics 27, 334-342. doi: 10.1093/bioinformatics/btq665.
    • (2011) Bioinformatics , vol.27 , pp. 334-342
    • Angiuoli, S.V.1    Salzberg, S.L.2
  • 3
    • 0031765021 scopus 로고    scopus 로고
    • Physiological diversity of the rhizosphere diazotroph assemblages of selected salt marsh grasses
    • Bagwell, C. E., Piceno, Y. M., Ashburne-Lucas, A., and Lovell, C. R. (1998). Physiological diversity of the rhizosphere diazotroph assemblages of selected salt marsh grasses. Appl. Environ. Microbiol. 64, 4276-4282.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 4276-4282
    • Bagwell, C.E.1    Piceno, Y.M.2    Ashburne-Lucas, A.3    Lovell, C.R.4
  • 4
    • 0032899631 scopus 로고    scopus 로고
    • Detection of total and hemolysin-producing Vibrio parahaemolyticus in shellfish using multiplex PCR amplification of tl, tdh, and trh
    • Bej, A. K., Patterson, D. P., Brasher, C. W., Vickery, M. C., Jones, D. D., and Kaysner, C. A. (1999). Detection of total and hemolysin-producing Vibrio parahaemolyticus in shellfish using multiplex PCR amplification of tl, tdh, and trh. J. Microbiol. Methods 36, 215-225. doi: 10.1016/S0167-7012(99)00037-8.
    • (1999) J. Microbiol. Methods , vol.36 , pp. 215-225
    • Bej, A.K.1    Patterson, D.P.2    Brasher, C.W.3    Vickery, M.C.4    Jones, D.D.5    Kaysner, C.A.6
  • 6
    • 48449098309 scopus 로고    scopus 로고
    • Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus
    • Boyd, E. F., Cohen, A. L., Naughton, L. M., Ussery, D. W., Binnewies, T. T., Stine, O. C., et al. (2008). Molecular analysis of the emergence of pandemic Vibrio parahaemolyticus. BMC Microbiol. 8:110. doi: 10.1186/1471-2180-8-110.
    • (2008) BMC Microbiol , vol.8 , pp. 110
    • Boyd, E.F.1    Cohen, A.L.2    Naughton, L.M.3    Ussery, D.W.4    Binnewies, T.T.5    Stine, O.C.6
  • 7
    • 80053385574 scopus 로고    scopus 로고
    • Vibrio parahaemolyticus cell biology and pathogenicity determinants
    • Broberg, C. A., Calder, T. J., and Orth, K. (2011). Vibrio parahaemolyticus cell biology and pathogenicity determinants. Microbes Infect. 13, 992-1001. doi: 10.1016/j.micinf.2011.06.013.
    • (2011) Microbes Infect , vol.13 , pp. 992-1001
    • Broberg, C.A.1    Calder, T.J.2    Orth, K.3
  • 8
    • 50449095280 scopus 로고    scopus 로고
    • Vibrio parahaemolyticus orchestrates a multifaceted host cell infection by induction of autophagy, cell rounding, and then cell lysis
    • Burdette, D. L., Yarbrough, M. L., Orvedahl, A., Gilpin, C. J., and Orth, K. (2008). Vibrio parahaemolyticus orchestrates a multifaceted host cell infection by induction of autophagy, cell rounding, and then cell lysis. Proc. Natl. Acad. Sci. U.S.A. 105, 12497-12502. doi: 10.1073/pnas.0802773105.
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 12497-12502
    • Burdette, D.L.1    Yarbrough, M.L.2    Orvedahl, A.3    Gilpin, C.J.4    Orth, K.5
  • 9
    • 77953939504 scopus 로고    scopus 로고
    • Effect on human cells of environmental Vibrio parahaemolyticus strains carrying type III secretion system 2
    • Caburlotto, G., Lleó, M. M., Hilton, T., Huq, A., Colwell, R. R., and Kaper, J. B. (2010). Effect on human cells of environmental Vibrio parahaemolyticus strains carrying type III secretion system 2. Infect. Immun. 78, 3280-3287. doi: 10.1128/IAI.00050-10.
    • (2010) Infect. Immun , vol.78 , pp. 3280-3287
    • Caburlotto, G.1    Lleó, M.M.2    Hilton, T.3    Huq, A.4    Colwell, R.R.5    Kaper, J.B.6
  • 10
    • 85013686622 scopus 로고    scopus 로고
    • Preliminary FoodNet data on the incidence of infection with pathogens transmitted commonly through food-10 states, 2006
    • CDC. (2007). Preliminary FoodNet data on the incidence of infection with pathogens transmitted commonly through food-10 states, 2006. Morb. Mortal. Wkly. Rep. 55, 854-856.
    • (2007) Morb. Mortal. Wkly. Rep , vol.55 , pp. 854-856
  • 11
    • 52149111685 scopus 로고    scopus 로고
    • Surveillance for waterborne disease and outbreaks associated with recreational water use and other aquatic facility-associated health events-United States, 2005-2006
    • CDC. (2008). Surveillance for waterborne disease and outbreaks associated with recreational water use and other aquatic facility-associated health events-United States, 2005-2006. Morb. Mortal. Wkly. Rep. 57, 1-29.
    • (2008) Morb. Mortal. Wkly. Rep , vol.57 , pp. 1-29
  • 12
    • 79957920506 scopus 로고    scopus 로고
    • Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence
    • Chen, Y., Stine, O. C., Badger, J. H., Gil, A. I., Nair, G. B., Nishibuchi, M., et al. (2011). Comparative genomic analysis of Vibrio parahaemolyticus: serotype conversion and virulence. BMC Genomics 12:294. doi: 10.1186/1471-2164-12-294.
    • (2011) BMC Genomics , vol.12 , pp. 294
    • Chen, Y.1    Stine, O.C.2    Badger, J.H.3    Gil, A.I.4    Nair, G.B.5    Nishibuchi, M.6
  • 13
    • 3042631307 scopus 로고    scopus 로고
    • Genome sequence assembly using trace signals and additional sequence information
    • Chevreux, B., Wetter, T., and Suhai, S. (1999). Genome sequence assembly using trace signals and additional sequence information. Comp. Sci. Biol. 99, 45-56.
    • (1999) Comp. Sci. Biol , vol.99 , pp. 45-56
    • Chevreux, B.1    Wetter, T.2    Suhai, S.3
  • 14
    • 84876156065 scopus 로고    scopus 로고
    • Isolation and characterization of pandemic and nonpandemic strains of Vibrio parahaemolyticus from an outbreak of diarrhea in North 24 Parganas, West Bengal, India
    • Chowdhury, G., Ghosh, S., Pazhani, G. P., Paul, B. K., Maji, D., Mukhopadhyay, A. K., et al. (2013). Isolation and characterization of pandemic and nonpandemic strains of Vibrio parahaemolyticus from an outbreak of diarrhea in North 24 Parganas, West Bengal, India. Foodborne Pathog. Dis. 10, 338-342. doi: 10.1089/fpd.2012.1340.
    • (2013) Foodborne Pathog. Dis , vol.10 , pp. 338-342
    • Chowdhury, G.1    Ghosh, S.2    Pazhani, G.P.3    Paul, B.K.4    Maji, D.5    Mukhopadhyay, A.K.6
  • 15
    • 1542409039 scopus 로고    scopus 로고
    • Assessment of evolution of pandemic Vibrio parahaemolyticus by multilocus sequence typing
    • Chowdhury, N. R., Stine, O. C., Glenn Morris, J., and Nair, G. B. (2004). Assessment of evolution of pandemic Vibrio parahaemolyticus by multilocus sequence typing. J. Bacteriol. 42, 1280-1282.
    • (2004) J. Bacteriol , vol.42 , pp. 1280-1282
    • Chowdhury, N.R.1    Stine, O.C.2    Glenn Morris, J.3    Nair, G.B.4
  • 17
    • 84878486199 scopus 로고    scopus 로고
    • Molecular epidemiology and genetic variation of pathogenic Vibrio parahaemolyticus in Peru
    • Gavilan, R. G., Zamudio, M. L., and Martinez-Urtaza, J. (2013). Molecular epidemiology and genetic variation of pathogenic Vibrio parahaemolyticus in Peru. PLoS Negl. Trop. Dis. 7:e2210. doi: 10.1371/journal.pntd.0002210.
    • (2013) PLoS Negl. Trop. Dis , vol.7
    • Gavilan, R.G.1    Zamudio, M.L.2    Martinez-Urtaza, J.3
  • 18
    • 33846659488 scopus 로고    scopus 로고
    • Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST
    • Gertz, E. M., Yu, Y. K., Agarwala, R., Schaffer, A. A., and Altschul, S. F. (2006). Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. BMC Biol. 4:41. doi: 10.1186/1741-7007-4-41.
    • (2006) BMC Biol , vol.4 , pp. 41
    • Gertz, E.M.1    Yu, Y.K.2    Agarwala, R.3    Schaffer, A.A.4    Altschul, S.F.5
  • 19
    • 41949117270 scopus 로고    scopus 로고
    • Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing
    • González-Escalona, N., Martinez-Urtaza, J., Romero, J., Espejo, R. T., Jaykus, L., and Depaola, A. (2008). Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing. J. Bacteriol. 190, 2831-2840. doi: 10.1128/JB.01808-07.
    • (2008) J. Bacteriol , vol.190 , pp. 2831-2840
    • González-Escalona, N.1    Martinez-Urtaza, J.2    Romero, J.3    Espejo, R.T.4    Jaykus, L.5    Depaola, A.6
  • 20
    • 79959367997 scopus 로고    scopus 로고
    • Genome sequence of the clinical O4:K12 serotype Vibrio parahaemolyticus strain 10329
    • Gonzalez-Escalona, N., Strain, E. A., De Jesus, A. J., Jones, J. L., and Depaola, A. (2011). Genome sequence of the clinical O4:K12 serotype Vibrio parahaemolyticus strain 10329. J. Bacteriol. 193, 3405-3406. doi: 10.1128/JB.05044-11.
    • (2011) J. Bacteriol , vol.193 , pp. 3405-3406
    • Gonzalez-Escalona, N.1    Strain, E.A.2    De Jesus, A.J.3    Jones, J.L.4    Depaola, A.5
  • 21
    • 85013728405 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and anlysis program for Windows 95/98/NT
    • Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and anlysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41, 95-98.
    • (1999) Nucleic Acids Symp. Ser , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 22
    • 84868573340 scopus 로고    scopus 로고
    • The role of type III secretion system 2 in Vibrio parahaemolyticus pathogenicity
    • Ham, H., and Orth, K. (2012). The role of type III secretion system 2 in Vibrio parahaemolyticus pathogenicity. J. Microbiol. 50, 719-725. doi: 10.1007/s12275-012-2550-2.
    • (2012) J. Microbiol , vol.50 , pp. 719-725
    • Ham, H.1    Orth, K.2
  • 23
    • 58149287717 scopus 로고    scopus 로고
    • Genome plasticity of Vibrio parahaemolyticus: microevolution of the 'pandemic group'
    • Han, H., Wong, H. C., Kan, B., Guo, Z., Zeng, X., Yin, S., et al. (2008). Genome plasticity of Vibrio parahaemolyticus: microevolution of the 'pandemic group'. BMC Genomics 9:570. doi: 10.1186/1471-2164-9-570.
    • (2008) BMC Genomics , vol.9 , pp. 570
    • Han, H.1    Wong, H.C.2    Kan, B.3    Guo, Z.4    Zeng, X.5    Yin, S.6
  • 24
    • 65349157656 scopus 로고    scopus 로고
    • Inactivation of mismatch repair increases the diversity of Vibrio parahaemolyticus
    • Hazen, T. H., Kennedy, K. D., Chen, S., Yi, S. V., and Sobecky, P. A. (2009). Inactivation of mismatch repair increases the diversity of Vibrio parahaemolyticus. Environ. Microbiol. 11, 1254-1266. doi: 10.1111/j.1462-2920.2008.01853.x.
    • (2009) Environ. Microbiol , vol.11 , pp. 1254-1266
    • Hazen, T.H.1    Kennedy, K.D.2    Chen, S.3    Yi, S.V.4    Sobecky, P.A.5
  • 25
    • 84881092850 scopus 로고    scopus 로고
    • Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli
    • Hazen, T. H., Sahl, J. W., Fraser, C. M., Donnenberg, M. S., Scheutz, F., and Rasko, D. A. (2013). Refining the pathovar paradigm via phylogenomics of the attaching and effacing Escherichia coli. Proc. Natl. Acad. Sci. U.S.A. 110, 12810-12815. doi: 10.1073/pnas.1306836110.
    • (2013) Proc. Natl. Acad. Sci. U.S.A , vol.110 , pp. 12810-12815
    • Hazen, T.H.1    Sahl, J.W.2    Fraser, C.M.3    Donnenberg, M.S.4    Scheutz, F.5    Rasko, D.A.6
  • 26
    • 38449087207 scopus 로고    scopus 로고
    • Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp
    • Hazen, T. H., Wu, D., Eisen, J. A., and Sobecky, P. A. (2007). Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp. Appl. Environ. Microbiol. 73, 7703-7710. doi: 10.1128/AEM.01577-07.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 7703-7710
    • Hazen, T.H.1    Wu, D.2    Eisen, J.A.3    Sobecky, P.A.4
  • 27
    • 33646781213 scopus 로고    scopus 로고
    • Four genomic islands that mark post-1995 pandemic Vibrio parahaemolyticus isolates
    • Hurley, C. C., Quirke, A. M., Reen, F. J., and Boyd, E. F. (2006). Four genomic islands that mark post-1995 pandemic Vibrio parahaemolyticus isolates. BMC Genom. 7:104. doi: 10.1186/1471-2164-7-104.
    • (2006) BMC Genom , vol.7 , pp. 104
    • Hurley, C.C.1    Quirke, A.M.2    Reen, F.J.3    Boyd, E.F.4
  • 29
    • 84862732602 scopus 로고    scopus 로고
    • Biochemical, serological, and virulence characterization of clinical and oyster Vibrio parahaemolyticus isolates
    • Jones, J. L., Ludeke, C. H., Bowers, J. C., Garrett, N., Fischer, M., Parsons, M. B., et al. (2012). Biochemical, serological, and virulence characterization of clinical and oyster Vibrio parahaemolyticus isolates. J. Clin. Microbiol. 50, 2343-2352. doi: 10.1128/JCM.00196-12.
    • (2012) J. Clin. Microbiol , vol.50 , pp. 2343-2352
    • Jones, J.L.1    Ludeke, C.H.2    Bowers, J.C.3    Garrett, N.4    Fischer, M.5    Parsons, M.B.6
  • 30
    • 0021176439 scopus 로고
    • Cloning of the thermostable direct or Kanagawa phenomenon-associated hemolysin of Vibrio parahaemolyticus
    • Kaper, J. B., Campen, R. K., Seidler, R. J., Baldini, M. M., and Falkow, S. (1984). Cloning of the thermostable direct or Kanagawa phenomenon-associated hemolysin of Vibrio parahaemolyticus. Infect. Immun. 45, 290-292.
    • (1984) Infect. Immun , vol.45 , pp. 290-292
    • Kaper, J.B.1    Campen, R.K.2    Seidler, R.J.3    Baldini, M.M.4    Falkow, S.5
  • 31
    • 0021149499 scopus 로고
    • Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli
    • Kieser, T. (1984). Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli. Plasmid 12, 19-36. doi: 10.1016/0147-619X(84)90063-5.
    • (1984) Plasmid , vol.12 , pp. 19-36
    • Kieser, T.1
  • 32
    • 69649109364 scopus 로고    scopus 로고
    • Circos: an information aesthetic for comparative genomics
    • Krzywinski, M., Schein, J., Birol, I., Connors, J., Gascoyne, R., Horsman, D., et al. (2009). Circos: an information aesthetic for comparative genomics. Genome Res. 19, 1639-1645. doi: 10.1101/gr.092759.109.
    • (2009) Genome Res , vol.19 , pp. 1639-1645
    • Krzywinski, M.1    Schein, J.2    Birol, I.3    Connors, J.4    Gascoyne, R.5    Horsman, D.6
  • 33
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar, S., Tamura, K., and Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings Bioinf. 5, 150-163. doi: 10.1093/bib/5.2.150.
    • (2004) Briefings Bioinf , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 34
    • 0021825282 scopus 로고
    • The diarrheal response of humans to some classic serotypes of enteropathogenic Escherichia coli is dependent on a plasmid encoding an enteroadhesiveness factor
    • Levine, M. M., Nataro, J. P., Karch, H., Baldini, M. M., Kaper, J. B., Black, R. E., et al. (1985). The diarrheal response of humans to some classic serotypes of enteropathogenic Escherichia coli is dependent on a plasmid encoding an enteroadhesiveness factor. J. Infect. Dis. 152, 550-559. doi: 10.1093/infdis/152.3.550.
    • (1985) J. Infect. Dis , vol.152 , pp. 550-559
    • Levine, M.M.1    Nataro, J.P.2    Karch, H.3    Baldini, M.M.4    Kaper, J.B.5    Black, R.E.6
  • 35
    • 77955355597 scopus 로고    scopus 로고
    • Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii
    • Lin, B., Wang, Z., Malanoski, A. P., O'grady, E. A., Wimpee, C. F., Vuddhakul, V., et al. (2010). Comparative genomic analyses identify the Vibrio harveyi genome sequenced strains BAA-1116 and HY01 as Vibrio campbellii. Environ. Microbiol. Rep. 2, 81-89. doi: 10.1111/j.1758-2229.2009.00100.x.
    • (2010) Environ. Microbiol. Rep , vol.2 , pp. 81-89
    • Lin, B.1    Wang, Z.2    Malanoski, A.P.3    O'grady, E.A.4    Wimpee, C.F.5    Vuddhakul, V.6
  • 37
    • 84903575463 scopus 로고    scopus 로고
    • Suitability of the molecular subtyping methods intergenic spacer region, direct genome restriction analysis, and pulsed-field gel electrophoresis for clinical and environmental Vibrio parahaemolyticus isolates
    • Ludeke, C. H., Fischer, M., Lafon, P., Cooper, K., and Jones, J. L. (2014). Suitability of the molecular subtyping methods intergenic spacer region, direct genome restriction analysis, and pulsed-field gel electrophoresis for clinical and environmental Vibrio parahaemolyticus isolates. Foodborne Pathog. Dis. 11, 520-528. doi: 10.1089/fpd.2013.1728.
    • (2014) Foodborne Pathog. Dis , vol.11 , pp. 520-528
    • Ludeke, C.H.1    Fischer, M.2    Lafon, P.3    Cooper, K.4    Jones, J.L.5
  • 38
    • 15544363393 scopus 로고    scopus 로고
    • Vibrio parahaemolyticus disruption of epithelial cell tight junctions occurs independently of toxin production
    • Lynch, T., Livingstone, S., Buenaventura, E., Lutter, E., Fedwick, J., Buret, A. G., et al. (2005). Vibrio parahaemolyticus disruption of epithelial cell tight junctions occurs independently of toxin production. Infect. Immun. 73, 1275-1283. doi: 10.1128/IAI.73.3.1275-1283.2005.
    • (2005) Infect. Immun , vol.73 , pp. 1275-1283
    • Lynch, T.1    Livingstone, S.2    Buenaventura, E.3    Lutter, E.4    Fedwick, J.5    Buret, A.G.6
  • 39
    • 84891341085 scopus 로고    scopus 로고
    • Epidemiology and etiology characteristics of foodborne outbreaks caused by Vibrio parahaemolyticus during 2008-2010 in Guangdong province, China
    • Ma, C., Deng, X., Ke, C., He, D., Liang, Z., Li, W., et al. (2014). Epidemiology and etiology characteristics of foodborne outbreaks caused by Vibrio parahaemolyticus during 2008-2010 in Guangdong province, China. Foodborne Pathog. Dis. 11, 21-29. doi: 10.1089/fpd.2013.1522.
    • (2014) Foodborne Pathog. Dis , vol.11 , pp. 21-29
    • Ma, C.1    Deng, X.2    Ke, C.3    He, D.4    Liang, Z.5    Li, W.6
  • 40
    • 0037333881 scopus 로고    scopus 로고
    • Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae
    • Makino, K., Oshima, K., Kurokawa, K., Yokoyama, K., Uda, T., Tagomori, K., et al. (2003). Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae. Lancet 361, 743-749. doi: 10.1016/S0140-6736(03)12659-1.
    • (2003) Lancet , vol.361 , pp. 743-749
    • Makino, K.1    Oshima, K.2    Kurokawa, K.3    Yokoyama, K.4    Uda, T.5    Tagomori, K.6
  • 41
    • 17344390490 scopus 로고    scopus 로고
    • Pandemic spread of an O3:K6 clone of Vibrio parahaemolyticus and emergence of related strains evidenced by arbitrarily primed PCR and toxRS sequence analyses
    • Matsumoto, C., Okuda, J., Ishibashi, M., Iwanaga, M., Garg, P., Rammamurthy, T., et al. (2000). Pandemic spread of an O3:K6 clone of Vibrio parahaemolyticus and emergence of related strains evidenced by arbitrarily primed PCR and toxRS sequence analyses. J. Clin. Microbiol. 38, 578-585.
    • (2000) J. Clin. Microbiol , vol.38 , pp. 578-585
    • Matsumoto, C.1    Okuda, J.2    Ishibashi, M.3    Iwanaga, M.4    Garg, P.5    Rammamurthy, T.6
  • 42
    • 34247236766 scopus 로고    scopus 로고
    • Virulence gene-and pandemic group-specific marker profiling of clinical Vibrio parahaemolyticus isolates
    • Meador, C. E., Parsons, M. B., Bopp, C. A., Gerner-Smidt, P., Painter, J. A., and Vora, G. J. (2007). Virulence gene-and pandemic group-specific marker profiling of clinical Vibrio parahaemolyticus isolates. J. Clin. Microbiol. 45, 1133-1139. doi: 10.1128/JCM.00042-07.
    • (2007) J. Clin. Microbiol , vol.45 , pp. 1133-1139
    • Meador, C.E.1    Parsons, M.B.2    Bopp, C.A.3    Gerner-Smidt, P.4    Painter, J.A.5    Vora, G.J.6
  • 43
    • 2342554388 scopus 로고    scopus 로고
    • Instability of pathogenicity islands in uropathogenic Escherichia coli 536
    • Middendorf, B., Hochhut, B., Leipold, K., Dobrindt, U., Blum-Oehler, G., and Hacker, J. (2004). Instability of pathogenicity islands in uropathogenic Escherichia coli 536. J. Bacteriol. 186, 3086-3096. doi: 10.1128/JB.186.10.3086-3096.2004.
    • (2004) J. Bacteriol , vol.186 , pp. 3086-3096
    • Middendorf, B.1    Hochhut, B.2    Leipold, K.3    Dobrindt, U.4    Blum-Oehler, G.5    Hacker, J.6
  • 44
    • 0037393043 scopus 로고    scopus 로고
    • PCR detection of a newly emerged pandemic Vibrio parahaemolyticus O3:K6 pathogen in pure cultures and seeded waters from the Gulf of Mexico
    • Myers, M. L., Panicker, G., and Bej, A. K. (2003). PCR detection of a newly emerged pandemic Vibrio parahaemolyticus O3:K6 pathogen in pure cultures and seeded waters from the Gulf of Mexico. Appl. Environ. Microbiol. 69, 2194-2200. doi: 10.1128/AEM.69.4.2194-2200.2003.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 2194-2200
    • Myers, M.L.1    Panicker, G.2    Bej, A.K.3
  • 45
    • 33846507957 scopus 로고    scopus 로고
    • Global dissemination of Vibrio parahaemolyticus serotype O3:K6 and its serovariants
    • Nair, G. B., Ramamurthy, T., Bhattacharya, S. K., Dutta, B., Takeda, Y., and Sack, D. A. (2007). Global dissemination of Vibrio parahaemolyticus serotype O3:K6 and its serovariants. Clin. Microbiol. Rev. 20, 39-48. doi: 10.1128/CMR.00025-06.
    • (2007) Clin. Microbiol. Rev , vol.20 , pp. 39-48
    • Nair, G.B.1    Ramamurthy, T.2    Bhattacharya, S.K.3    Dutta, B.4    Takeda, Y.5    Sack, D.A.6
  • 46
    • 0034121789 scopus 로고    scopus 로고
    • A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains
    • Nasu, H., Iida, T., Sugahara, T., Yamaichi, Y., Park, K. S., Yokoyama, K., et al. (2000). A filamentous phage associated with recent pandemic Vibrio parahaemolyticus O3:K6 strains. J. Clin. Microbiol. 38, 2156-2161.
    • (2000) J. Clin. Microbiol , vol.38 , pp. 2156-2161
    • Nasu, H.1    Iida, T.2    Sugahara, T.3    Yamaichi, Y.4    Park, K.S.5    Yokoyama, K.6
  • 47
    • 0026768780 scopus 로고
    • Enterotoxigenicity of Vibrio parahaemolyticus with and without genes encoding thermostable direct hemolysin
    • Nishibuchi, M., Fasano, A., Russell, R. G., and Kaper, J. B. (1992). Enterotoxigenicity of Vibrio parahaemolyticus with and without genes encoding thermostable direct hemolysin. Infect. Immun. 60, 3539-3545.
    • (1992) Infect. Immun , vol.60 , pp. 3539-3545
    • Nishibuchi, M.1    Fasano, A.2    Russell, R.G.3    Kaper, J.B.4
  • 48
    • 0029065574 scopus 로고
    • Thermostable direct hemolysin gene of Vibrio parahaemolyticus: a virulence gene acquired by a marine bacterium
    • Nishibuchi, M., and Kaper, J. B. (1995). Thermostable direct hemolysin gene of Vibrio parahaemolyticus: a virulence gene acquired by a marine bacterium. Infect. Immun. 63, 2093-2099.
    • (1995) Infect. Immun , vol.63 , pp. 2093-2099
    • Nishibuchi, M.1    Kaper, J.B.2
  • 49
    • 77955823466 scopus 로고    scopus 로고
    • Distribution of type III secretion systems in Vibrio parahaemolyticus from the northern Gulf of Mexico
    • Noriea, N. F. III., Johnson, C. N., Griffitt, K. J., and Grimes, D. J. (2010). Distribution of type III secretion systems in Vibrio parahaemolyticus from the northern Gulf of Mexico. J. Appl. Microbiol. 109, 953-962. doi: 10.1111/j.1365-2672.2010.04722.x.
    • (2010) J. Appl. Microbiol , vol.109 , pp. 953-962
    • Noriea, N.F.1    Johnson, C.N.2    Griffitt, K.J.3    Grimes, D.J.4
  • 50
    • 60549087142 scopus 로고    scopus 로고
    • Identification and characterization of a novel type III secretion system in trh-positive Vibrio parahaemolyticus strain TH3996 reveal genetic lineage and diversity of pathogenic machinery beyond the species level
    • Okada, N., Iida, T., Park, K. S., Goto, N., Yasunaga, T., Hiyoshi, H., et al. (2009). Identification and characterization of a novel type III secretion system in trh-positive Vibrio parahaemolyticus strain TH3996 reveal genetic lineage and diversity of pathogenic machinery beyond the species level. Infect. Immun. 77, 904-913. doi: 10.1128/IAI.01184-08.
    • (2009) Infect. Immun , vol.77 , pp. 904-913
    • Okada, N.1    Iida, T.2    Park, K.S.3    Goto, N.4    Yasunaga, T.5    Hiyoshi, H.6
  • 51
    • 0030719954 scopus 로고    scopus 로고
    • Emergence of a unique O3:K6 clone of Vibrio parahaemolyticus in Calcutta, India, and isolation of strains from the same clonal group from southeast Asian travelers arriving in Japan
    • Okuda, J., Ishibashi, M., Hayakawa, E., Nishino, T., Takeda, Y., Mukhopadhyay, A. K., et al. (1997). Emergence of a unique O3:K6 clone of Vibrio parahaemolyticus in Calcutta, India, and isolation of strains from the same clonal group from southeast Asian travelers arriving in Japan. J. Clin. Microbiol. 35, 3150-3155.
    • (1997) J. Clin. Microbiol , vol.35 , pp. 3150-3155
    • Okuda, J.1    Ishibashi, M.2    Hayakawa, E.3    Nishino, T.4    Takeda, Y.5    Mukhopadhyay, A.K.6
  • 52
    • 22144441380 scopus 로고    scopus 로고
    • Identification of Vibrio parahaemolyticus pandemic group-specific DNA sequence by genomic subtraction
    • Okura, M., Osawa, R., Arakawa, E., Terajima, J., and Watanabe, H. (2005). Identification of Vibrio parahaemolyticus pandemic group-specific DNA sequence by genomic subtraction. J. Clin. Microbiol. 43, 3533-3536. doi: 10.1128/JCM.43.7.3533-3536.2005.
    • (2005) J. Clin. Microbiol , vol.43 , pp. 3533-3536
    • Okura, M.1    Osawa, R.2    Arakawa, E.3    Terajima, J.4    Watanabe, H.5
  • 53
    • 31844451805 scopus 로고    scopus 로고
    • Identification of proteins secreted via Vibrio parahaemolyticus type III secretion system 1
    • Ono, T., Park, K. S., Ueta, M., Iida, T., and Honda, T. (2006). Identification of proteins secreted via Vibrio parahaemolyticus type III secretion system 1. Infect. Immun. 74, 1032-1042. doi: 10.1128/IAI.74.2.1032-1042.2006.
    • (2006) Infect. Immun , vol.74 , pp. 1032-1042
    • Ono, T.1    Park, K.S.2    Ueta, M.3    Iida, T.4    Honda, T.5
  • 54
    • 45149131193 scopus 로고    scopus 로고
    • First clinical report of pandemic Vibrio parahaemolyticus O3:K6 infection in Italy
    • Ottaviani, D., Leoni, F., Rocchegiani, E., Santarelli, S., Canonico, C., Masini, L., et al. (2008). First clinical report of pandemic Vibrio parahaemolyticus O3:K6 infection in Italy. J. Clin. Microbiol. 46, 2144-2145. doi: 10.1128/JCM.00683-08.
    • (2008) J. Clin. Microbiol , vol.46 , pp. 2144-2145
    • Ottaviani, D.1    Leoni, F.2    Rocchegiani, E.3    Santarelli, S.4    Canonico, C.5    Masini, L.6
  • 55
    • 84891804612 scopus 로고    scopus 로고
    • The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)
    • Overbeek, R., Olson, R., Pusch, G. D., Olsen, G. J., Davis, J. J., Disz, T., et al. (2014). The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST). Nucleic Acids Res. 42, D206-D214. doi: 10.1093/nar/gkt1226.
    • (2014) Nucleic Acids Res , vol.42 , pp. D206-D214
    • Overbeek, R.1    Olson, R.2    Pusch, G.D.3    Olsen, G.J.4    Davis, J.J.5    Disz, T.6
  • 56
    • 7044260666 scopus 로고    scopus 로고
    • Functional characterization of two type III secretion systems of Vibrio parahaemolyticus
    • Park, K. S., Ono, T., Rokuda, M., Jang, M. H., Okada, K., Iida, T., et al. (2004). Functional characterization of two type III secretion systems of Vibrio parahaemolyticus. Infect. Immun. 72, 6659-6665. doi: 10.1128/IAI.72.11.6659-6665.2004.
    • (2004) Infect. Immun , vol.72 , pp. 6659-6665
    • Park, K.S.1    Ono, T.2    Rokuda, M.3    Jang, M.H.4    Okada, K.5    Iida, T.6
  • 57
    • 34948895674 scopus 로고    scopus 로고
    • PulseNet USA standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio parahaemolyticus
    • Parsons, M. B., Cooper, K. L., Kubota, K. A., Puhr, N., Simington, S., Calimlim, P. S., et al. (2007). PulseNet USA standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio parahaemolyticus. Foodborne Pathog. Dis. 4, 285-292. doi: 10.1089/fpd.2007.0089.
    • (2007) Foodborne Pathog. Dis , vol.4 , pp. 285-292
    • Parsons, M.B.1    Cooper, K.L.2    Kubota, K.A.3    Puhr, N.4    Simington, S.5    Calimlim, P.S.6
  • 58
    • 21144442735 scopus 로고    scopus 로고
    • Pandemic Vibrio parahaemolyticus O3:K6 spread, France
    • Quilici, M. L., Robert-Pillot, A., Picart, J., and Fournier, J. M. (2005). Pandemic Vibrio parahaemolyticus O3:K6 spread, France. Emerg. Infec. Dis. 11, 1148-1149. doi: 10.3201/eid1107.041008.
    • (2005) Emerg. Infec. Dis , vol.11 , pp. 1148-1149
    • Quilici, M.L.1    Robert-Pillot, A.2    Picart, J.3    Fournier, J.M.4
  • 59
    • 13244252316 scopus 로고    scopus 로고
    • Visualization of comparative genomic analyses by BLAST score ratio
    • Rasko, D. A., Myers, G. S., and Ravel, J. (2005). Visualization of comparative genomic analyses by BLAST score ratio. BMC Bioinformatics 6:2. doi: 10.1186/1471-2105-6-2.
    • (2005) BMC Bioinformatics , vol.6 , pp. 2
    • Rasko, D.A.1    Myers, G.S.2    Ravel, J.3
  • 60
    • 84897949482 scopus 로고    scopus 로고
    • The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes
    • Sahl, J. W., Caporaso, J. G., Rasko, D. A., and Keim, P. (2014). The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes. PeerJ 2:e332. doi: 10.7717/peerj.332.
    • (2014) PeerJ , vol.2
    • Sahl, J.W.1    Caporaso, J.G.2    Rasko, D.A.3    Keim, P.4
  • 61
    • 84872876043 scopus 로고    scopus 로고
    • Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter
    • Sahl, J. W., Gillece, J. D., Schupp, J. M., Waddell, V. G., Driebe, E. M., Engelthaler, D. M., et al. (2013). Evolution of a pathogen: a comparative genomics analysis identifies a genetic pathway to pathogenesis in Acinetobacter. PLoS ONE 8:e54287. doi: 10.1371/journal.pone.0054287.
    • (2013) PLoS ONE , vol.8
    • Sahl, J.W.1    Gillece, J.D.2    Schupp, J.M.3    Waddell, V.G.4    Driebe, E.M.5    Engelthaler, D.M.6
  • 62
    • 79251525497 scopus 로고    scopus 로고
    • A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation
    • Sahl, J. W., Steinsland, H., Redman, J. C., Angiuoli, S. V., Nataro, J. P., Sommerfelt, H., et al. (2011). A comparative genomic analysis of diverse clonal types of enterotoxigenic Escherichia coli reveals pathovar-specific conservation. Infect. Immun. 79, 950-960. doi: 10.1128/IAI.00932-10.
    • (2011) Infect. Immun , vol.79 , pp. 950-960
    • Sahl, J.W.1    Steinsland, H.2    Redman, J.C.3    Angiuoli, S.V.4    Nataro, J.P.5    Sommerfelt, H.6
  • 63
    • 84876161703 scopus 로고    scopus 로고
    • Vibrio parahaemolyticus type VI secretion system 1 is activated in marine conditions to target bacteria, and is differentially regulated from system 2
    • Salomon, D., Gonzalez, H., Updegraff, B. L., and Orth, K. (2013). Vibrio parahaemolyticus type VI secretion system 1 is activated in marine conditions to target bacteria, and is differentially regulated from system 2. PLoS ONE 8:e61086. doi: 10.1371/journal.pone.0061086.
    • (2013) PLoS ONE , vol.8
    • Salomon, D.1    Gonzalez, H.2    Updegraff, B.L.3    Orth, K.4
  • 64
    • 35648960851 scopus 로고    scopus 로고
    • Inferring the evolutionary history of Vibrios by means of multilocus sequence analysis
    • Sawabe, T., Kita-Tsukamoto, K., and Thompson, F. L. (2007). Inferring the evolutionary history of Vibrios by means of multilocus sequence analysis. J. Bacteriol. 189, 7932-7936. doi: 10.1128/JB.00693-07.
    • (2007) J. Bacteriol , vol.189 , pp. 7932-7936
    • Sawabe, T.1    Kita-Tsukamoto, K.2    Thompson, F.L.3
  • 65
    • 84892159415 scopus 로고    scopus 로고
    • Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov
    • Sawabe, T., Ogura, Y., Matsumura, Y., Feng, G., Amin, A. R., Mino, S., et al. (2013). Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov. Front. Microbiol. 4:414. doi: 10.3389/fmicb.2013.00414.
    • (2013) Front. Microbiol , vol.4 , pp. 414
    • Sawabe, T.1    Ogura, Y.2    Matsumura, Y.3    Feng, G.4    Amin, A.R.5    Mino, S.6
  • 66
    • 0031030474 scopus 로고    scopus 로고
    • Plasmids isolated from marine sediment microbial communities contain replication and incompatibility regions unrelated to those of known plasmid groups
    • Sobecky, P. A., Mincer, T. J., Chang, M. C., and Helinski, D. R. (1997). Plasmids isolated from marine sediment microbial communities contain replication and incompatibility regions unrelated to those of known plasmid groups. Appl. Environ. Microbiol. 63, 888-895.
    • (1997) Appl. Environ. Microbiol , vol.63 , pp. 888-895
    • Sobecky, P.A.1    Mincer, T.J.2    Chang, M.C.3    Helinski, D.R.4
  • 67
    • 31944451633 scopus 로고    scopus 로고
    • Quinolones induce partial or total loss of pathogenicity islands in uropathogenic Escherichia coli by SOS-dependent or-independent pathways, respectively
    • Soto, S. M., Jimenez De Anta, M. T., and Vila, J. (2006). Quinolones induce partial or total loss of pathogenicity islands in uropathogenic Escherichia coli by SOS-dependent or-independent pathways, respectively. Antimicrob. Agents Chemother. 50, 649-653. doi: 10.1128/AAC.50.2.649-653.2006.
    • (2006) Antimicrob. Agents Chemother , vol.50 , pp. 649-653
    • Soto, S.M.1    Jimenez De Anta, M.T.2    Vila, J.3
  • 68
    • 33750403801 scopus 로고    scopus 로고
    • RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
    • Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688-2690. doi: 10.1093/bioinformatics/btl446.
    • (2006) Bioinformatics , vol.22 , pp. 2688-2690
    • Stamatakis, A.1
  • 69
    • 39749093110 scopus 로고    scopus 로고
    • Precise region and the character of the pathogenicity island in clinical Vibrio parahaemolyticus strains
    • Sugiyama, T., Iida, T., Izutsu, K., Park, K. S., and Honda, T. (2008). Precise region and the character of the pathogenicity island in clinical Vibrio parahaemolyticus strains. J. Bacteriol. 190, 1835-1837. doi: 10.1128/JB.01293-07.
    • (2008) J. Bacteriol , vol.190 , pp. 1835-1837
    • Sugiyama, T.1    Iida, T.2    Izutsu, K.3    Park, K.S.4    Honda, T.5
  • 70
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., and Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28, 2731-2739. doi: 10.1093/molbev/msr121.
    • (2011) Mol. Biol. Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 72
    • 44449179494 scopus 로고    scopus 로고
    • Identification of Vibrio cholerae and Vibrio mimicus by multilocus sequence analysis (MLSA)
    • Thompson, C. C., Thompson, F. L., and Vicente, A. C. (2008). Identification of Vibrio cholerae and Vibrio mimicus by multilocus sequence analysis (MLSA). Int. J. Syst. Evol. Microbiol. 58, 617-621. doi: 10.1099/ijs.0.65461-0.
    • (2008) Int. J. Syst. Evol. Microbiol , vol.58 , pp. 617-621
    • Thompson, C.C.1    Thompson, F.L.2    Vicente, A.C.3
  • 73
    • 25144436280 scopus 로고    scopus 로고
    • Phylogeny and molecular identification of Vibrios on the basis of multilocus sequence analysis
    • Thompson, F. L., Gevers, D., Thompson, C. C., Dawyndt, P., Naser, S., Hoste, B., et al. (2005). Phylogeny and molecular identification of Vibrios on the basis of multilocus sequence analysis. Appl. Environ. Microbiol. 71, 5107-5115. doi: 10.1128/AEM.71.9.5107-5115.2005.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 5107-5115
    • Thompson, F.L.1    Gevers, D.2    Thompson, C.C.3    Dawyndt, P.4    Naser, S.5    Hoste, B.6
  • 74
    • 34447540349 scopus 로고    scopus 로고
    • Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species
    • Thompson, F. L., Gomez-Gil, B., Vasconcelos, A. T., and Sawabe, T. (2007). Multilocus sequence analysis reveals that Vibrio harveyi and V. campbellii are distinct species. Appl. Environ. Microbiol. 73, 4279-4285. doi: 10.1128/AEM.00020-07.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 4279-4285
    • Thompson, F.L.1    Gomez-Gil, B.2    Vasconcelos, A.T.3    Sawabe, T.4
  • 75
    • 84873573701 scopus 로고    scopus 로고
    • Population structure of clinical and environmental Vibrio parahaemolyticus from the Pacific Northwest coast of the United States
    • Turner, J. W., Paranjpye, R. N., Landis, E. D., Biryukov, S. V., Gonzalez-Escalona, N., Nilsson, W. B., et al. (2013). Population structure of clinical and environmental Vibrio parahaemolyticus from the Pacific Northwest coast of the United States. PLoS ONE 8:e55726. doi: 10.1371/journal.pone.0055726.
    • (2013) PLoS ONE , vol.8
    • Turner, J.W.1    Paranjpye, R.N.2    Landis, E.D.3    Biryukov, S.V.4    Gonzalez-Escalona, N.5    Nilsson, W.B.6
  • 76
    • 30044448339 scopus 로고    scopus 로고
    • Microarray-based detection of genetic heterogeneity, antimicrobial resistance, and the viable but nonculturable state in human pathogenic Vibrio spp
    • Vora, G. J., Meador, C. E., Bird, M. M., Bopp, C. A., Andreadis, J. D., and Stenger, D. A. (2005). Microarray-based detection of genetic heterogeneity, antimicrobial resistance, and the viable but nonculturable state in human pathogenic Vibrio spp. Proc. Natl. Acad. Sci. U.S.A. 102, 19109-19114. doi: 10.1073/pnas.0505033102.
    • (2005) Proc. Natl. Acad. Sci. U.S.A , vol.102 , pp. 19109-19114
    • Vora, G.J.1    Meador, C.E.2    Bird, M.M.3    Bopp, C.A.4    Andreadis, J.D.5    Stenger, D.A.6
  • 77
    • 0034120242 scopus 로고    scopus 로고
    • Isolation of a pandemic O3:K6 clone of a Vibrio parahaemolyticus strain from environmental and clinical sources in Thailand
    • Vuddhakul, V., Chowdhury, A., Laohaprertthisan, V., Pungrasamee, P., Patararungrong, N., Thianmontri, P., et al. (2000). Isolation of a pandemic O3:K6 clone of a Vibrio parahaemolyticus strain from environmental and clinical sources in Thailand. Appl. Environ. Microbiol. 66, 2685-2689. doi: 10.1128/AEM.66.6.2685-2689.2000.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 2685-2689
    • Vuddhakul, V.1    Chowdhury, A.2    Laohaprertthisan, V.3    Pungrasamee, P.4    Patararungrong, N.5    Thianmontri, P.6
  • 79
    • 84867578193 scopus 로고    scopus 로고
    • Putative type VI secretion systems of Vibrio parahaemolyticus contribute to adhesion to cultured cell monolayers
    • Yu, Y., Yang, H., Li, J., Zhang, P., Wu, B., Zhu, B., et al. (2012). Putative type VI secretion systems of Vibrio parahaemolyticus contribute to adhesion to cultured cell monolayers. Arch. Microbiol. 194, 827-835. doi: 10.1007/s00203-012-0816-z.
    • (2012) Arch. Microbiol , vol.194 , pp. 827-835
    • Yu, Y.1    Yang, H.2    Li, J.3    Zhang, P.4    Wu, B.5    Zhu, B.6
  • 80
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • Zerbino, D. R., and Birney, E. (2008). Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18, 821-829. doi: 10.1101/gr.074492.107.
    • (2008) Genome Res , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 81
    • 84875812865 scopus 로고    scopus 로고
    • Virulence determinants for Vibrio parahaemolyticus infection
    • Zhang, L., and Orth, K. (2013). Virulence determinants for Vibrio parahaemolyticus infection. Curr. Opin. Microbiol. 16, 70-77. doi: 10.1016/j.mib.2013.02.002.
    • (2013) Curr. Opin. Microbiol , vol.16 , pp. 70-77
    • Zhang, L.1    Orth, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.