Inactivation of mismatch repair increases the diversity of Vibrio parahaemolyticus

Environmental Microbiology

Volumn 11, Issue 5, 2009, Pages 1254-1266

  Hazen, Tracy H ^a   Kennedy, K Danielle ^a   Chen, Shen ^a   Yi, Soojin V ^a   Sobecky, Patricia A ^a  

^a GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; PROTEIN MUTS;

ARTICLE; CHEMISTRY; COMPARATIVE STUDY; DNA SEQUENCE; GENE INACTIVATION; GENETIC VARIABILITY; GENETICS; HUMAN; ISOLATION AND PURIFICATION; MICROBIOLOGY; MISMATCH REPAIR; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYSIOLOGY; VIBRIO PARAHAEMOLYTICUS; VIBRIOSIS;

DNA MISMATCH REPAIR; DNA, BACTERIAL; ENVIRONMENTAL MICROBIOLOGY; GENE KNOCKOUT TECHNIQUES; GENETIC VARIATION; HUMANS; MOLECULAR SEQUENCE DATA; MUTS DNA MISMATCH-BINDING PROTEIN; SEQUENCE ANALYSIS, DNA; VIBRIO INFECTIONS; VIBRIO PARAHAEMOLYTICUS;

BACTERIA (MICROORGANISMS); VIBRIO; VIBRIO PARAHAEMOLYTICUS;

EID: 65349157656     PISSN: 14622912     EISSN: 14622920     Source Type: Journal    
DOI: 10.1111/j.1462-2920.2008.01853.x     Document Type: Article

References (62)

1. Bagwell, C.E., Piceno, Y.M., Ashburne-Lucas, A. Lovell, C.R. (1998) Physiological diversity of the rhizosphere diazotroph assemblages of selected salt marsh grasses. Appl Environ Microbiol 64 : 4276 4282. (Pubitemid 28537988)
2. Bhakat, K.K., Sharma, S. Das, J. (1999) The mutK gene of Vibrio cholerae: a new gene involved in DNA mismatch repair. J Bacteriol 181 : 879 883. (Pubitemid 29061570)
3. Bjedov, I., Tenaillon, O., Gérard, B., Souza, V., Denamur, E., Radman, M., et al. (2003) Stress-induced mutagenesis in bacteria. Science 300 : 1404 1409. (Pubitemid 36638154)
4. Choy, H.E. Fowler, R.G. (1985) The specificity of base-pair substitution induced by the MutL and MutS mutators in Escherichia coli. Mutat Res 142 : 93 97. (Pubitemid 15106408)
5. Criminger, J.D., Hazen, T.H., Sobecky, P.A. Lovell, C.R. (2007) Nitrogen fixation by Vibrio parahaemolyticus and its implications for a new ecological niche. Appl Environ Microbiol 73 : 5959 5961. (Pubitemid 47463012)
6. Daniels, N.A., MacKinnon, L., Bishop, R., Altekruse, S., Ray, B., Hammond, R.M., et al. (2000) Vibrio parahaemolyticus infections in the United States, 1973-98. J Infect Dis 181 : 1661 1666. (Pubitemid 30387758)
7. Dehio, C. Meyer, M. (1997) Maintenance of broad-host-range incompatibility group P and group Q plasmids and transposition of Tn5 in Bartonella henselae following conjugal plasmid transfer from Escherichia coli. J Bacteriol 179 : 538 540. (Pubitemid 27030408)
8. Denamur, E. Matic, I. (2006) Evolution of mutation rates in bacteria. Mol Microbiol 60 : 820 827.
9. Denamur, E., Lecointre, G., Darlu, P., Tenaillon, O., Acquaviva, C., Sayada, C., et al. (2000) Evolutionary implications of the frequent horizontal transfer of mismatch repair genes. Cell 103 : 711 721.
10. DePaola, A., Ulaszek, J., Kaysner, C.A., Tenge, B.J., Nordstrom, J.L., Wells, J., et al. (2003) Molecular, serological, and virulence characteristics of Vibrio parahaemolyticus isolated from environmental, food, and clinical sources in North America and Asia. Appl Environ Microbiol 69 : 3999 4005. (Pubitemid 36870059)
11. Enos-Berlage, J.L., Guvener, Z.T., Keenan, C.E. McCarter, L.L. (2005) Genetic determinants of biofilm development of opaque and translucent Vibrio parahaemolyticus. Mol Microbiol 55 : 1160 1182. (Pubitemid 40299185)
12. Ferenci, T. (2003) What is driving the acquisition of mutS and rpoS polymorphisms in Escherichia coli? Trends Microbiol 11 : 457 461. (Pubitemid 37214872)
13. Friedhoff, P., Sheybani, B., Thomas, E., Merz, C. Pingoud, A. (2002) Haemophilus influenzae and Vibrio cholerae genes for mutH are able to fully complement a mutH defect in Escherichia coli. FEMS Microbiol Lett 208 : 123 128. (Pubitemid 34267013)
14. Fujino, T., Miwatani, T., Yasuda, J., Kondo, M., Takeda, Y., Akita, Y., et al. (1965) Taxonomic studies on the bacterial strains isolated from cases of 'shirasu' food-poisoning (Pasteurella parahaemolytica) and related microorganisms. Biken J 8 : 63 71.
15. Giraud, A., Matic, I., Tenaillon, O., Clara, A., Radman, M., Fons, M. Taddei, F. (2001) Costs and benefits of high mutation rates: adaptive evolution of bacteria in the mouse gut. Science 291 : 2606 2608. (Pubitemid 32249685)
16. González-Escalona, N., Martinez-Urtaza, J., Romero, J., Espejo, R.T., Jaykus, L. DePaola, A. (2008) Determination of molecular phylogenetics of Vibrio parahaemolyticus strains by multilocus sequence typing. J Bacteriol 190 : 2831 2840.
17. Güvener, Z.T. McCarter, L.L. (2003) Multiple regulators control capsular polysaccharide production in Vibrio parahaemolyticus. J Bacteriol 185 : 5431 5441. (Pubitemid 37082400)
18. Hall, T.A. (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41 : 95 98.
19. Han, F., Walker, R.D., Janes, M.E., Prinyawiwatkul, W. Ge, B. (2007) Antimicrobial susceptibility of Vibrio parahaemolyticus and Vibrio vulnificus from Louisiana gulf and retail raw oysters. Appl Environ Microbiol 73 : 7096 7098. (Pubitemid 350076833)
20. Hazen, T.H., Wu, D., Eisen, J.A. Sobecky, P.A. (2007) Sequence characterization and comparative analysis of three plasmids isolated from environmental Vibrio spp. Appl Environ Microbiol 73 : 7703 7710.
21. Herbelin, C.J., Chirillo, S.C., Melnick, K.A. Whittam, T.S. (2000) Gene conservation and loss in the mutS-rpoS genomic region of pathogenic Escherichia coli. J Bacteriol 182 : 5381 5390.
22. Hilton, T., Rosche, T., Froelich, B., Smith, B. Oliver, J. (2006) Capsular polysaccharide phase variation in Vibrio vulnificus. Appl Environ Microbiol 72 : 6986 6993.
23. Hudson, R.R. Kaplan, N.L. (1985) Statistical properties of the number of recombination events in the history of a sample of DNA sequences. Genetics 111 : 147 164. (Pubitemid 16248827)
24. Hunt, D.E., David, L.A., Gevers, D., Preheim, S.P., Alm, E.J. Polz, M.F. (2008) Resource partitioning and sympatric differentiation among closely related bacterioplankton. Science 320 : 1081 1085.
25. Keymer, D.P., Miller, M.C., Schoolnik, G.K. Boehm, A.B. (2007) Genomic and phenotypic diversity of coastal Vibrio cholerae strains is linked to environmental factors. Appl Environ Microbiol 73 : 3705 3714. (Pubitemid 46871461)
26. Kivisaar, M. (2003) Stationary phase mutagenesis: mechanisms that accelerate adaptation of microbial populations under environmental stress. Environ Microbiol 5 : 814 827. (Pubitemid 37181552)
27. Kovach, M.E., Phillips, E.W., Elzer, P.H., Roop, R.M., 2nd. Peterson, K.M. (1994) pBBR1MCS: a broad-host-range cloning vector. Biotechniques 16 : 800 802. (Pubitemid 2103380)
28. Kumar, S., Tamura, K. Nei, M. (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 : 150 163.
29. LeClerc, J.E., Baoguang, L., Payne, W.L. Cebula, T.A. (1996) High mutation frequencies among Escherichia coli and Salmonella pathogens. Science 274 : 1208 1211. (Pubitemid 26389290)
30. Lújan, A.M., Moyano, A.J., Segura, I., Argarañea, C.E. Smania, A.M. (2007) Quorum-sensing-deficient (lasR) mutants emerge at high frequency from a Pseudomonas aeruginosa mutS strain. Microbiology 153 : 225 237. (Pubitemid 46111837)
31. McCarter, L.L. (1998) OpaR, a homolog of Vibrio harveyi LuxR, controls opacity of Vibrio parahaemolyticus. J Bacteriol 180 : 3166 3173. (Pubitemid 28285031)
32. McLaughlin, J.B., DePaola, A., Bopp, C.A., Martinek, K.A., Napolilli, N.P., Allison, C.G., et al. (2005) Outbreak of Vibrio parahaemolyticus gastroenteritis associated with Alaskan oysters. N Engl J Med 353 : 1463 1470. (Pubitemid 41400920)
33. Makino, K., Oshima, K., Kurokawa, K., Yokoyama, K., Uda, T., Tagomori, K., et al. (2003) Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae. Lancet 361 : 743 749. (Pubitemid 36293629)
34. Marcobal, A.M., Sela, D.A., Wolf, Y.I., Makarova, K.S. Mills, D.A. (2008) The role of hypermutability in the evolution of the genus Oenococcus. J Bacteriol 190 : 564 570.
35. Martinez-Urtaza, J., Lozano-Leon, A., DePaola, A., Ishibashi, M., Shimada, K., Nishibuchi, M. Liebana, E. (2004) Characterization of pathogenic Vibrio parahaemolyticus isolates from clinical sources in Spain and comparison with Asian and North American pandemic isolates. J Clin Microbiol 42 : 4672 4678. (Pubitemid 39362388)
36. Martinez-Urtaza, J., Lozano-Leon, A., Viñea-Feas, A., de Novoa, J. Garcia-Martin, O. (2006) Differences in the API 20E biochemical patterns of clinical and environmental Vibrio parahaemolyticus isolates. FEMS Microbiol Lett 255 : 75 81. (Pubitemid 43185552)
37. Matic, I., Rayssiguier, C. Radman, M. (1995) Interspecies gene exchange in bacteria: the role of SOS and mismatch repair systems in evolution of species. Cell 80 : 507 515.
38. Meador, C.E., Parsons, M.A., Bopp, C.A., Gerner-Smidt, P., Painter J.A. Vora, G.J. (2007) Virulence gene- and pandemic group-specific marker profiling of clinical Vibrio parahaemolyticus isolates. J Clin Microbiol 45 : 1133 1139. (Pubitemid 46626475)
39. Meier, P. Wackernagel, W. (2005) Impact of mutS inactivation on foreign DNA acquisition by natural transformation in Pseudomonas stutzeri. J Bacteriol 187 : 143 154. (Pubitemid 40024190)
40. Milton, D.L., O'Toole, R., Hörstedt, P. Wolf-Watz, H. (1996) Flagellin A is essential for the virulence of Vibrio anguillarum. J Bacteriol 178 : 1310 1319. (Pubitemid 26073387)
41. Nei, M. (1987) Molecular Evolutionary Genetics. New York, NY, USA : Columbia University Press.
42. Okuda, J., Hayakawa, E., Nishibuchi, M. Nishino, T. (1999) Sequence analysis of the gyrA and parC homologues of a wild-type strain of Vibrio parahaemolyticus and its fluoroquinolone-resistant mutants. Antimicrob Agents Chemother 43 : 1156 1162. (Pubitemid 29214740)
43. Oliver, A., Cantón, R., Campo, P., Baquero, F. Blázquez, J. (2000) High frequency of hypermutable Pseudomonas aeruginosa in cystic fibrosis lung infection. Science 288 : 1251 1253. (Pubitemid 30367204)
44. Oliver, A., Baquero, F. Blazquez, J. (2002) The mismatch repair system (mutS, mutL, and uvrD genes) in Pseudomonas aeruginosa: molecular characterization of naturally occurring mutants. Mol Microbiol 43 : 1641 1650. (Pubitemid 34595553)
45. Parsons, M.B., Cooper, K.L., Kubota, K.A., Puhr, N., Simington, S., Calimlim, P.S., et al. (2007) PulseNet USA standardized pulsed-field gel electrophoresis protocol for subtyping of Vibrio parahaemolyticus. Foodborne Pathog Dis 4 : 285 292. (Pubitemid 47518167)
46. Prunier, A.L. Leclercq, R. (2005) Role of mutS and mutL genes in hypermutability and recombination in Staphylococcus aureus. J Bacteriol 187 : 3455 3464. (Pubitemid 40628701)
47. Rayssiguier, C., Thaler, D.S. Radman, M. (1989) The barrier to recombination between Escherichia coli and Salmonella typhimurium is disrupted in mismatch-repair mutants. Nature 342 : 396 401. (Pubitemid 19277515)
48. Richardson, A.R. Stojiljkovic, I. (2001) Mismatch repair and the regulation of phase variation in Neisseria meningitidis. Mol Microbiol 40 : 645 655. (Pubitemid 32453117)
49. Richardson, A.R., Yu, Z., Popovic, T. Stojiljkovic, I. (2002) Mutator clones of Neisseria meningitidis in epidemic serogroup A disease. Proc Nat Acad Sci USA 99 : 6103 6107. (Pubitemid 34493272)
50. Rozas, J., Sánchez-DeIBarrio, J.C., Messeguer, X. Rozas, R. (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19 : 2496 2497. (Pubitemid 38016658)
51. Sawyer, S. (1989) Statistical tests for detecting gene conversion. Mol Biol Evol 6 : 526 538. (Pubitemid 19210235)
52. Scally, M., Schuenzel, E.L., Stouthamer, R. Nunney, L. (2005) Multilocus sequence type system for the plant pathogen Xylella fastidiosa and relative contributions of recombination and point mutation to clonal diversity. Appl Environ Microbiol 71 : 8491 8499. (Pubitemid 41803980)
53. Schäffer, A.A., Aravind, L., Madden, T.L., Shavirin, S., Spouge, J.L., Wolf, Y.I., Koonin, E.V. Altschul, S.A. (2001) Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements. Nucleic Acids Res 29 : 2994 3005. (Pubitemid 32685225)
54. Schofield, M.J. Hsieh, P. (2003) DNA mismatch repair: molecular mechanisms and biological function. Annu Rev Microbiol 57 : 579 608. (Pubitemid 37406637)
55. Tang, H., Chang, M., Ko, W., Huang, K., Lee, C. Y., C. (2002) In vitro and in vivo activities of newer fluoroquinolines against Vibrio vulnificus. Antimicrob Agents Chemother 46 : 3580 3584. (Pubitemid 35192929)
56. Tarr, C.L., Patel, J.S., Puhr, N.D., Sowers, E.G., Bopp, C.A. Strockbine, N.A. (2007) Identification of Vibrio isolates by a multiplex PCR assay and rpoB sequence determination. J Clin Microbiol 45 : 134 140. (Pubitemid 46106419)
57. Thompson, F.L., Iida, T. Swings, J. (2004a) Biodiversity of Vibrios. Microbiol Mol Biol Rev 68 : 403 431. (Pubitemid 39238276)
58. Thompson, J.R., Randa, M.A., Marcelino, L.A., Tomita-Mitchell, A., Lim, E. Polz, M.F. (2004b) Diversity and dynamics of a north Atlantic coastal Vibrio community. Appl Environ Microbiol 70 : 4103 4110. (Pubitemid 38969754)
59. Watson, M.E., Burns, J.L. Smith, A.L. (2004) Hypermutable Haemophilus influenzae with mutations in mutS are found in cystic fibrosis sputum. Microbiology-Sgm 150 : 2947 2958. (Pubitemid 39317796)
60. Watterson, G.A. (1975) On the number of segregation sites. Theor Popul Biol 7 : 256 276.
61. Zahrt, T.C., Buchmeier, N. Maloy, S. (1999) Effect of mutS and recD mutations on Salmonella virulence. Infect Immun 67 : 6168 6172. (Pubitemid 29508153)
62. Zeibell, K., Aguila, S., Shi, V.Y., Chan, A., Yang, H. Miller, J.H. (2007) Mutagenesis and repair in Bacillus anthracis: the effect of mutators. J Bacteriol 189 : 2331 2338. (Pubitemid 46411347)