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Volumn 7, Issue , 2006, Pages

Four genomic islands that mark post-1995 pandemic Vibrio parahaemolyticus isolates

Author keywords

[No Author keywords available]

Indexed keywords

DNA; INTEGRASE; PRIMER DNA;

EID: 33646781213     PISSN: 14712164     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-7-104     Document Type: Article
Times cited : (83)

References (48)
  • 1
    • 0030974049 scopus 로고    scopus 로고
    • Food-borne disease outbreaks due to bacteria in Taiwan, 1986 to 1995
    • Pan TM, Wang TK, Lee CL, Chien SW, Horng CB: Food-borne disease outbreaks due to bacteria in Taiwan, 1986 to 1995. J Clin Microbial 1997, 35(5):1260-1262.
    • (1997) J Clin Microbiol , vol.35 , Issue.5 , pp. 1260-1262
    • Pan, T.M.1    Wang, T.K.2    Lee, C.L.3    Chien, S.W.4    Horng, C.B.5
  • 2
    • 22844447191 scopus 로고    scopus 로고
    • Epidemiology, pathogenesis, and prevention of foodborne Vibrio parahaemolyticus infections
    • Yeung PS, Boor KJ: Epidemiology, pathogenesis, and prevention of foodborne Vibrio parahaemolyticus infections. Food-borne Pathog Dis 2004, 1(2):74-88.
    • (2004) Food-borne Pathog Dis , vol.1 , Issue.2 , pp. 74-88
    • Yeung, P.S.1    Boor, K.J.2
  • 3
    • 0030719954 scopus 로고    scopus 로고
    • Emergence of a unique 03:K6 clone of Vibrio parahaemolyticus in Calcutta, India, and isolation of strains from the same clonal group from Southeast Asian travelers arriving in Japan
    • Okuda J, Ishibashi M, Hayakawa E, Nishino T, Takeda Y, Mukhopadhyay AK, Garg S, Bhattacharya SK, Nair GB, Nishibuchi M: Emergence of a unique 03:K6 clone of Vibrio parahaemolyticus in Calcutta, India, and isolation of strains from the same clonal group from Southeast Asian travelers arriving in Japan. J Clin Microbiol 1997, 35(12):3150-3155.
    • (1997) J Clin Microbiol , vol.35 , Issue.12 , pp. 3150-3155
    • Okuda, J.1    Ishibashi, M.2    Hayakawa, E.3    Nishino, T.4    Takeda, Y.5    Mukhopadhyay, A.K.6    Garg, S.7    Bhattacharya, S.K.8    Nair, G.B.9    Nishibuchi, M.10
  • 4
    • 0033759726 scopus 로고    scopus 로고
    • Environmental investigations of Vibrio parahaemolyticus in oysters after outbreaks in Washington, Texas, and New York (1997 and 1998)
    • DePaola A, Kaysner CA, Bowers J, Cook DW: Environmental investigations of Vibrio parahaemolyticus in oysters after outbreaks in Washington, Texas, and New York (1997 and 1998). Appl Environ Microbiol 2000, 66(11):4649-4654.
    • (2000) Appl Environ Microbiol , vol.66 , Issue.11 , pp. 4649-4654
    • DePaola, A.1    Kaysner, C.A.2    Bowers, J.3    Cook, D.W.4
  • 5
    • 0024368432 scopus 로고
    • Emergence of a restricted bioserovar of Vibrio parahaemolyticus as the predominant cause of Vibrio-associated gastroenteritis on the West Coast of the United States and Mexico
    • Abbott SL, Powers C, Kaysner CA, Takeda Y, Ishibashi M, Joseph SW, Janda JM: Emergence of a restricted bioserovar of Vibrio parahaemolyticus as the predominant cause of Vibrio-associated gastroenteritis on the West Coast of the United States and Mexico. J Clin Microbiol 1989, 27(12):2891-2893.
    • (1989) J Clin Microbiol , vol.27 , Issue.12 , pp. 2891-2893
    • Abbott, S.L.1    Powers, C.2    Kaysner, C.A.3    Takeda, Y.4    Ishibashi, M.5    Joseph, S.W.6    Janda, J.M.7
  • 7
    • 5444226303 scopus 로고    scopus 로고
    • Characterization of pathogenic Vibrio parahaemolyticus isolates from clinical sources in Spain and comparison with Asian and North American pandemic isolates
    • Martinez-Urtaza J, Lozano-Leon A, DePaola A, Ishibashi M, Shimada K, Nishibuchi M, Liebana E: Characterization of pathogenic Vibrio parahaemolyticus isolates from clinical sources in Spain and comparison with Asian and North American pandemic isolates. J Clin Microbiol 2004, 42(10):4672-4678.
    • (2004) J Clin Microbiol , vol.42 , Issue.10 , pp. 4672-4678
    • Martinez-Urtaza, J.1    Lozano-Leon, A.2    DePaola, A.3    Ishibashi, M.4    Shimada, K.5    Nishibuchi, M.6    Liebana, E.7
  • 9
    • 8744269628 scopus 로고    scopus 로고
    • Serologic and molecular characterization of Vibrio parahaemolyticus strains isolated from seawater and fish products of the Gulf of Mexico
    • Cabrera-Garcia ME, Vazquez-Salinas C, Quinones-Ramirez El: Serologic and molecular characterization of Vibrio parahaemolyticus; strains isolated from seawater and fish products of the Gulf of Mexico. Appl Environ Microbiol 2004, 70(11):6401-6406.
    • (2004) Appl Environ Microbiol , vol.70 , Issue.11 , pp. 6401-6406
    • Cabrera-Garcia, M.E.1    Vazquez-Salinas, C.2    Quinones-Ramirez, E.I.3
  • 10
    • 7944238406 scopus 로고    scopus 로고
    • Biochemical and virulence characterization of viable but nonculturable cells of Vibrio parahaemolyticus
    • Wong HC, Shen CT, Chang CN, Lee YS, Oliver JD: Biochemical and virulence characterization of viable but nonculturable cells of Vibrio parahaemolyticus. J Food Prot 2004, 67(11):2430-2435.
    • (2004) J Food Prot , vol.67 , Issue.11 , pp. 2430-2435
    • Wong, H.C.1    Shen, C.T.2    Chang, C.N.3    Lee, Y.S.4    Oliver, J.D.5
  • 11
    • 0030742039 scopus 로고    scopus 로고
    • Analysis of the thermostable, direct hemolysin (tdh) gene and the tdhrelated hemolysin (trh) genes in urease-positive strains of Vibrio parahaemolyticus isolated on the West Coast of the United States
    • Okuda J, Ishibashi M, Abbott SL, Janda JM, Nishibuchi M: Analysis of the thermostable, direct hemolysin (tdh) gene and the tdhrelated hemolysin (trh) genes in urease-positive strains of Vibrio parahaemolyticus isolated on the West Coast of the United States. J Clin Microbiol 1997, 35(8):1965-1971.
    • (1997) J Clin Microbiol , vol.35 , Issue.8 , pp. 1965-1971
    • Okuda, J.1    Ishibashi, M.2    Abbott, S.L.3    Janda, J.M.4    Nishibuchi, M.5
  • 12
    • 14844313210 scopus 로고    scopus 로고
    • Identification of a protein biomarker unique to the pandemic 03:K6 clone of Vibrio parahaemolyticus
    • Williams TL, Musser SM, Nordstrom JL, DePaola A, Monday SR: Identification of a protein biomarker unique to the pandemic 03:K6 clone of Vibrio parahaemolyticus. J Clin Microbial 2004, 42(4):1657-1665.
    • (2004) J Clin Microbiol , vol.42 , Issue.4 , pp. 1657-1665
    • Williams, T.L.1    Musser, S.M.2    Nordstrom, J.L.3    DePaola, A.4    Monday, S.R.5
  • 13
    • 7044260666 scopus 로고    scopus 로고
    • Functional characterization of two type III secretion systems of Vibrio parahaemolyticus
    • Park KS, Ono T, Rokuda M, Jang MH, Okada K, lida T, Honda T: Functional characterization of two type III secretion systems of Vibrio parahaemolyticus. Infect Immun 2004, 72(11):6659-6665.
    • (2004) Infect Immun , vol.72 , Issue.11 , pp. 6659-6665
    • Park, K.S.1    Ono, T.2    Rokuda, M.3    Jang, M.H.4    Okada, K.5    Lida, T.6    Honda, T.7
  • 14
    • 7044239478 scopus 로고    scopus 로고
    • PCR-based identification of pandemic group Vibrio parahaemolyticus with a novel group-specific primer pair
    • Okura M, Osawa R, Iguchi A, Takagi M, Arakawa E, Terajima J, Watanabe H: PCR-based identification of pandemic group Vibrio parahaemolyticus with a novel group-specific primer pair. Microbiol Immunol 2004, 48(10):787-790.
    • (2004) Microbiol Immunol , vol.48 , Issue.10 , pp. 787-790
    • Okura, M.1    Osawa, R.2    Iguchi, A.3    Takagi, M.4    Arakawa, E.5    Terajima, J.6    Watanabe, H.7
  • 15
    • 14844331810 scopus 로고    scopus 로고
    • Characterization of new 03:K6 strains and phylogenetically related strains of Vibrio parahaemolyticus isolated in Taiwan and other countries
    • Wong HC, Chen CH, Chung YJ, Liu SH, Wang TK, Lee CL, Chiou CS, Nishibuchi M, Lee BK: Characterization of new 03:K6 strains and phylogenetically related strains of Vibrio parahaemolyticus isolated in Taiwan and other countries. J Appl Microbiol 2005, 98(3):572-580.
    • (2005) J Appl Microbiol , vol.98 , Issue.3 , pp. 572-580
    • Wong, H.C.1    Chen, C.H.2    Chung, Y.J.3    Liu, S.H.4    Wang, T.K.5    Lee, C.L.6    Chiou, C.S.7    Nishibuchi, M.8    Lee, B.K.9
  • 18
  • 20
    • 21444456620 scopus 로고    scopus 로고
    • (delta) (rho)-Web, an online tool to assess composition similarity of individual nucleic acid sequences
    • van Passel MWJ, Luyf ACM, van Kampen AHC, Bart A, van der Ende A: (delta) (rho)-Web, an online tool to assess composition similarity of individual nucleic acid sequences. Bioinformatics 2005, 21:3053-3055.
    • (2005) Bioinformatics , vol.21 , pp. 3053-3055
    • van Passel, M.W.J.1    Luyf, A.C.M.2    van Kampen, A.H.C.3    Bart, A.4    van der Ende, A.5
  • 22
    • 11044226569 scopus 로고    scopus 로고
    • The Vibrio seventh pandemic island-II is a 26.9 kb genomic island present in Vibrio cholerae EI Tor and 0139 serogroup isolates that shows homology to a 43.4 kb genomic island in V. vulnificus
    • O'Shea YA, Finnan S, Reen FJ, Morrissey JP, O'Gara F, Boyd EF: The Vibrio seventh pandemic island-II is a 26.9 kb genomic island present in Vibrio cholerae EI Tor and 0139 serogroup isolates that shows homology to a 43.4 kb genomic island in V. vulnificus. Microbiology 2004, 150(Pt 12):4053-4063.
    • (2004) Microbiology , vol.150 , Issue.PART 12 , pp. 4053-4063
    • O'Shea, Y.A.1    Finnan, S.2    Reen, F.J.3    Morrissey, J.P.4    O'Gara, F.5    Boyd, E.F.6
  • 23
    • 5444240735 scopus 로고    scopus 로고
    • Evolutionary genetic analysis of the emergence of epidemic Vibrio cholerae isolates on the basis of comparative nucleotide sequence analysis and multilocus virulence gene profiles
    • O'Shea YA, Reen FJ, Quirke AM, Boyd EF: Evolutionary genetic analysis of the emergence of epidemic Vibrio cholerae isolates on the basis of comparative nucleotide sequence analysis and multilocus virulence gene profiles. J Clin Microbiol 2004, 42(10):4657-4671.
    • (2004) J Clin Microbiol , vol.42 , Issue.10 , pp. 4657-4671
    • O'Shea, Y.A.1    Reen, F.J.2    Quirke, A.M.3    Boyd, E.F.4
  • 24
    • 33645838396 scopus 로고    scopus 로고
    • Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen
    • Quirke AM, Reen FJ, Claesson MJ, Boyd EF: Genomic island identification in Vibrio vulnificus reveals significant genome plasticity in this human pathogen. Bioinformatics 2006, 22(8):905-910.
    • (2006) Bioinformatics , vol.22 , Issue.8 , pp. 905-910
    • Quirke, A.M.1    Reen, F.J.2    Claesson, M.J.3    Boyd, E.F.4
  • 26
    • 13444301596 scopus 로고    scopus 로고
    • Molecular evolution of Vibrio pathogenicity island-2 (VPI-2): Mosaic structure among Vibrio cholerae and Vibrio mimicus natural isolates
    • Jermyn WS, Boyd EF: Molecular evolution of Vibrio pathogenicity island-2 (VPI-2):mosaic structure among Vibrio cholerae and Vibrio mimicus natural isolates. Microbiology 2005, 151 (Pt 1): 311-322.
    • (2005) Microbiology , vol.151 , Issue.PART 1 , pp. 311-322
    • Jermyn, W.S.1    Boyd, E.F.2
  • 27
    • 0036855374 scopus 로고    scopus 로고
    • Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates
    • Jermyn WS, Boyd EF: Characterization of a novel Vibrio pathogenicity island (VPI-2) encoding neuraminidase (nanH) among toxigenic Vibrio cholerae isolates. Microbiology 2002, 148(Pt 11):3681-3693.
    • (2002) Microbiology , vol.148 , Issue.PART 11 , pp. 3681-3693
    • Jermyn, W.S.1    Boyd, E.F.2
  • 28
    • 0037022337 scopus 로고    scopus 로고
    • Comparative genomic analysis of Vibrio cholerae: Genes that correlate with cholera endemic and pandemic disease
    • Dziejman M, Balon E, Boyd D, Fraser CM, Heidelberg JF, Mekalanos JJ: Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease. Proc Natl Acad Sci U S A 2002, 99(3):1556-1561.
    • (2002) Proc Natl Acad Sci U S A , vol.99 , Issue.3 , pp. 1556-1561
    • Dziejman, M.1    Balon, E.2    Boyd, D.3    Fraser, C.M.4    Heidelberg, J.F.5    Mekalanos, J.J.6
  • 29
    • 0036302109 scopus 로고    scopus 로고
    • Genotyping of pandemic Vibrio parahaemolyticus 03:K6 still open to question
    • Osawa R, Iguchi A, Arakawa E, Watanabe H: Genotyping of pandemic Vibrio parahaemolyticus 03:K6 still open to question. J Clin Microbiol 2002, 40(7):2708-2709.
    • (2002) J Clin Microbiol , vol.40 , Issue.7 , pp. 2708-2709
    • Osawa, R.1    Iguchi, A.2    Arakawa, E.3    Watanabe, H.4
  • 31
    • 22144441380 scopus 로고    scopus 로고
    • Identification of Vibrio parahaemolyticus pandemic group-specific DNA sequence by genomic subtraction
    • Okura M, Osawa R, Arakawa E, Terajima J, Watanabe H: Identification of Vibrio parahaemolyticus pandemic group-specific DNA sequence by genomic subtraction. J Clin Microbiol 2005, 43(7):3533-3536.
    • (2005) J Clin Microbiol , vol.43 , Issue.7 , pp. 3533-3536
    • Okura, M.1    Osawa, R.2    Arakawa, E.3    Terajima, J.4    Watanabe, H.5
  • 32
    • 0030057090 scopus 로고    scopus 로고
    • Lysogenic conversion by a filamentous phage encoding cholera toxin
    • Waldor MK, Mekalanos JJ: Lysogenic conversion by a filamentous phage encoding cholera toxin. Science 1996, 272(5270):1910-1914.
    • (1996) Science , vol.272 , Issue.5270 , pp. 1910-1914
    • Waldor, M.K.1    Mekalanos, J.J.2
  • 33
    • 0029986215 scopus 로고    scopus 로고
    • A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139
    • Waldor MK, Tschape H, Mekalanos JJ: A new type of conjugative transposon encodes resistance to sulfamethoxazole, trimethoprim, and streptomycin in Vibrio cholerae O139. J Bacteriol 1996, 178(14):4157-4165.
    • (1996) J Bacteriol , vol.178 , Issue.14 , pp. 4157-4165
    • Waldor, M.K.1    Tschape, H.2    Mekalanos, J.J.3
  • 34
    • 0028229563 scopus 로고
    • Emergence of a new cholera pandemic: Molecular analysis of virulence determinants in Vibrio cholerae O139 and development of a live vaccine prototype
    • Waldor MK, Mekalanos JJ: Emergence of a new cholera pandemic: molecular analysis of virulence determinants in Vibrio cholerae O139 and development of a live vaccine prototype. J Infect Dis 1994, 170(2):278-283.
    • (1994) J Infect Dis , vol.170 , Issue.2 , pp. 278-283
    • Waldor, M.K.1    Mekalanos, J.J.2
  • 37
    • 0028847868 scopus 로고
    • Genesis of the novel epidemic Vibrio cholerae O139 strain: Evidence for horizontal transfer of genes involved in polysaccharide synthesis
    • Bik EM, Bunschoten AE, Gouw RD, Mooi FR: Genesis of the novel epidemic Vibrio cholerae O139 strain: evidence for horizontal transfer of genes involved in polysaccharide synthesis. Embo J 1995, 14(2):209-216.
    • (1995) Embo J , vol.14 , Issue.2 , pp. 209-216
    • Bik, E.M.1    Bunschoten, A.E.2    Gouw, R.D.3    Mooi, F.R.4
  • 38
    • 0024967060 scopus 로고
    • Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements
    • Reiter WD, Palm P, Yeats S: Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements. Nucleic Acids Res 1989, 17(5):1907-1914.
    • (1989) Nucleic Acids Res , vol.17 , Issue.5 , pp. 1907-1914
    • Reiter, W.D.1    Palm, P.2    Yeats, S.3
  • 39
    • 0036120220 scopus 로고    scopus 로고
    • Genome-based identification of chromosomal regions specific for Salmonella spp
    • Hansen-Wester I, Hensel M: Genome-based identification of chromosomal regions specific for Salmonella spp. Infect Immun 2002, 70(5):2351-2360.
    • (2002) Infect Immun , vol.70 , Issue.5 , pp. 2351-2360
    • Hansen-Wester, I.1    Hensel, M.2
  • 40
    • 0028069540 scopus 로고
    • Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen
    • Blum G, Ott M, Lischewski A, Ritter A, Imrich H, Tschape H, Hacker J: Excision of large DNA regions termed pathogenicity islands from tRNA-specific loci in the chromosome of an Escherichia coli wild-type pathogen. Infect Immun 1994, 62(2):606-614.
    • (1994) Infect Immun , vol.62 , Issue.2 , pp. 606-614
    • Blum, G.1    Ott, M.2    Lischewski, A.3    Ritter, A.4    Imrich, H.5    Tschape, H.6    Hacker, J.7
  • 41
    • 0037310615 scopus 로고    scopus 로고
    • Traffic at the tmRNA Gene
    • Williams KP: Traffic at the tmRNA Gene. J Bacteriol 2003, 185(3):1059-1070.
    • (2003) J Bacteriol , vol.185 , Issue.3 , pp. 1059-1070
    • Williams, K.P.1
  • 42
    • 0347756648 scopus 로고    scopus 로고
    • Islander: A database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities
    • Mantri Y, Williams KP: Islander: a database of integrative islands in prokaryotic genomes, the associated integrases and their DNA site specificities. Nucleic Acids Res 2004:D55-58.
    • (2004) Nucleic Acids Res
    • Mantri, Y.1    Williams, K.P.2
  • 44
    • 84872262623 scopus 로고    scopus 로고
    • [http://ftp.ncbi.nlm.nih.gov].
  • 45
    • 84872265757 scopus 로고    scopus 로고
    • [http://deltarho.amc.uva.nl].
  • 46
    • 0029060923 scopus 로고
    • Dinucleotide relative abundance extremes: A genomic signature
    • Karlin S, Burge C: Dinucleotide relative abundance extremes: a genomic signature. Trends Genet 1995, 11(7):283-290.
    • (1995) Trends Genet , vol.11 , Issue.7 , pp. 283-290
    • Karlin, S.1    Burge, C.2
  • 47
    • 0035399931 scopus 로고    scopus 로고
    • Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes
    • Karlin S: Detecting anomalous gene clusters and pathogenicity islands in diverse bacterial genomes. Trends Microbiol 2001, 9(7):335-343.
    • (2001) Trends Microbiol , vol.9 , Issue.7 , pp. 335-343
    • Karlin, S.1
  • 48
    • 4344647970 scopus 로고    scopus 로고
    • Pervasive properties of the genomic signature
    • Jernigan RW, Baran RH: Pervasive properties of the genomic signature. BMC Genomics 2002, 3(l):23.
    • (2002) BMC Genomics , vol.3 , Issue.1 , pp. 23
    • Jernigan, R.W.1    Baran, R.H.2


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