-
1
-
-
58549090111
-
General overview of lung transplantation and review of organ allocation
-
Orens, J. B., and Garrity, E. R., Jr. (2009) General overview of lung transplantation and review of organ allocation. Proc. Am. Thorac. Soc. 6, 13-19
-
(2009)
Proc. Am. Thorac. Soc.
, vol.6
, pp. 13-19
-
-
Orens, J.B.1
Garrity, E.R.2
-
2
-
-
77957229065
-
The Registry of the International Society for Heart and Lung Transplantation: Twenty-seventh official adult lung and heart-lung transplant report - 2010
-
Christie, J. D., Edwards, L. B., Kucheryavaya, A. Y., Aurora, P., Dobbels, F., Kirk, R., Rahmel, A. O., Stehlik, J., and Hertz, M. I. (2010) The Registry of the International Society for Heart and Lung Transplantation: Twenty-seventh official adult lung and heart-lung transplant report - 2010. J. Heart Lung Transplant. 29, 1104-1118
-
(2010)
J. Heart Lung Transplant.
, vol.29
, pp. 1104-1118
-
-
Christie, J.D.1
Edwards, L.B.2
Kucheryavaya, A.Y.3
Aurora, P.4
Dobbels, F.5
Kirk, R.6
Rahmel, A.O.7
Stehlik, J.8
Hertz, M.I.9
-
3
-
-
84861796163
-
Current status of lung transplantation
-
Mahida, R. Y., Wiscombe, S., and Fisher, A. J. (2012) Current status of lung transplantation. Chronic Respiratory Disease 9, 131-145
-
(2012)
Chronic Respiratory Disease
, vol.9
, pp. 131-145
-
-
Mahida, R.Y.1
Wiscombe, S.2
Fisher, A.J.3
-
4
-
-
77955115175
-
Tissue-engineered lungs for in vivo implantation
-
Petersen, T. H., Calle, E. A., Zhao, L., Lee, E. J., Gui, L., Raredon, M. B., Gavrilov, K., Yi, T., Zhuang, Z. W., Breuer, C., Herzog, E., and Niklason, L. E. (2010) Tissue-engineered lungs for in vivo implantation. Science 329, 538-541
-
(2010)
Science
, vol.329
, pp. 538-541
-
-
Petersen, T.H.1
Calle, E.A.2
Zhao, L.3
Lee, E.J.4
Gui, L.5
Raredon, M.B.6
Gavrilov, K.7
Yi, T.8
Zhuang, Z.W.9
Breuer, C.10
Herzog, E.11
Niklason, L.E.12
-
5
-
-
77955422758
-
Regeneration and orthotopic transplantation of a bioartificial lung
-
Ott, H. C., Clippinger, B., Conrad, C., Schuetz, C., Pomerantseva, I., Ikonomou, L., Kotton, D., and Vacanti, J. P. (2010) Regeneration and orthotopic transplantation of a bioartificial lung. Nat. Med. 16, 927-933
-
(2010)
Nat. Med.
, vol.16
, pp. 927-933
-
-
Ott, H.C.1
Clippinger, B.2
Conrad, C.3
Schuetz, C.4
Pomerantseva, I.5
Ikonomou, L.6
Kotton, D.7
Vacanti, J.P.8
-
6
-
-
84872333448
-
Heart extracellular matrix supports cardiomyocyte differentiation of mouse embryonic stem cells
-
Higuchi, S., Lin, Q., Wang, J., Lim, T. K., Joshi, S. B., Anand, G. S., Chung, M. C., Sheetz, M. P., and Fujita, H. (2013) Heart extracellular matrix supports cardiomyocyte differentiation of mouse embryonic stem cells. J. Biosci. Bioeng. 115, 320-325
-
(2013)
J. Biosci. Bioeng.
, vol.115
, pp. 320-325
-
-
Higuchi, S.1
Lin, Q.2
Wang, J.3
Lim, T.K.4
Joshi, S.B.5
Anand, G.S.6
Chung, M.C.7
Sheetz, M.P.8
Fujita, H.9
-
7
-
-
84855374148
-
Initial binding and recellularization of decellularized mouse lung scaffolds with bone marrow-derived mesenchymal stromal cells
-
Daly, A., Wallis, J., Borg, Z., Bonvillain, R., Deng, B., Ballif, B., Jaworski, D. M., Allen, G. B., and Weiss, D. J. (2012) Initial binding and recellularization of decellularized mouse lung scaffolds with bone marrow-derived mesenchymal stromal cells. Tissue Eng. Part A 18, 1-16
-
(2012)
Tissue Eng Part A
, vol.18
, pp. 1-16
-
-
Daly, A.1
Wallis, J.2
Borg, Z.3
Bonvillain, R.4
Deng, B.5
Ballif, B.6
Jaworski, D.M.7
Allen, G.B.8
Weiss, D.J.9
-
8
-
-
84868509439
-
Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry
-
Welham, N. V., Chang, Z., Smith, L. M., and Frey, B. L. (2013) Proteomic analysis of a decellularized human vocal fold mucosa scaffold using 2D electrophoresis and high-resolution mass spectrometry. Biomaterials 34, 669-676
-
(2013)
Biomaterials
, vol.34
, pp. 669-676
-
-
Welham, N.V.1
Chang, Z.2
Smith, L.M.3
Frey, B.L.4
-
9
-
-
80051617064
-
A novel method for accurate collagen and biochemical assessment of pulmonary tissue utilizing one animal
-
Kliment, C. R., Englert, J. M., Crum, L. P., and Oury, T. D. (2011) A novel method for accurate collagen and biochemical assessment of pulmonary tissue utilizing one animal. Int. J. Clin. Exp. Pathol. 4, 349-355
-
(2011)
Int. J. Clin. Exp. Pathol.
, vol.4
, pp. 349-355
-
-
Kliment, C.R.1
Englert, J.M.2
Crum, L.P.3
Oury, T.D.4
-
10
-
-
84869749393
-
A nonhuman primate model of lung regeneration: Detergent-mediated decellularization and initial in vitro recellularization with mesenchymal stem cells
-
Bonvillain, R. W., Danchuk, S., Sullivan, D. E., Betancourt, A. M., Semon, J. A., Eagle, M. E., Mayeux, J. P., Gregory, A. N., Wang, G., Townley, I. K., Borg, Z. D., Weiss, D. J., and Bunnell, B. A. (2012) A nonhuman primate model of lung regeneration: Detergent-mediated decellularization and initial in vitro recellularization with mesenchymal stem cells. Tissue Eng. Part A 18, 2437-2452
-
(2012)
Tissue Eng. Part A
, vol.18
, pp. 2437-2452
-
-
Bonvillain, R.W.1
Danchuk, S.2
Sullivan, D.E.3
Betancourt, A.M.4
Semon, J.A.5
Eagle, M.E.6
Mayeux, J.P.7
Gregory, A.N.8
Wang, G.9
Townley, I.K.10
Borg, Z.D.11
Weiss, D.J.12
Bunnell, B.A.13
-
11
-
-
84861749409
-
Quantitative proteomic analysis of eight cartilaginous tissues reveals characteristic differences as well as similarities between subgroups
-
Önnerfjord, P., Khabut, A., Reinholt, F. P., Svensson, O., and Heinegård, D. (2012) Quantitative proteomic analysis of eight cartilaginous tissues reveals characteristic differences as well as similarities between subgroups. J. Biol. Chem. 287, 18913-18924
-
(2012)
J. Biol. Chem.
, vol.287
, pp. 18913-18924
-
-
Önnerfjord, P.1
Khabut, A.2
Reinholt, F.P.3
Svensson, O.4
Heinegård, D.5
-
12
-
-
84867444588
-
Rat mammary extracellular matrix composition and response to ibuprofen treatment during postpartum involution by differential GeLC-MS/MS analysis
-
O'Brien, J. H., Vanderlinden, L. A., Schedin, P. J., and Hansen, K. C. (2012) Rat mammary extracellular matrix composition and response to ibuprofen treatment during postpartum involution by differential GeLC-MS/MS analysis. J. Proteome Res. 11, 4894-4905
-
(2012)
J. Proteome Res.
, vol.11
, pp. 4894-4905
-
-
O'Brien, J.H.1
Vanderlinden, L.A.2
Schedin, P.J.3
Hansen, K.C.4
-
13
-
-
64749108158
-
Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics
-
Boersema, P. J., Raijmakers, R., Lemeer, S., Mohammed, S., and Heck, A. J. R. (2009) Multiplex peptide stable isotope dimethyl labeling for quantitative proteomics. Nat. Protoc. 4, 484-494
-
(2009)
Nat. Protoc.
, vol.4
, pp. 484-494
-
-
Boersema, P.J.1
Raijmakers, R.2
Lemeer, S.3
Mohammed, S.4
Heck, A.J.R.5
-
14
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross, P. L., Huang, Y. N., Marchese, J. N., Williamson, B., Parker, K., Hattan, S., Khainovski, N., Pillai, S., Dey, S., Daniels, S., Purkayastha, S., Juhasz, P., Martin, S., Bartlet-Jones, M., He, F., Jacobson, A., and Pappin, D. J. (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol. Cell. Proteomics 3, 1154-1169
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
Hattan, S.6
Khainovski, N.7
Pillai, S.8
Dey, S.9
Daniels, S.10
Purkayastha, S.11
Juhasz, P.12
Martin, S.13
Bartlet-Jones, M.14
He, F.15
Jacobson, A.16
Pappin, D.J.17
-
15
-
-
42349105213
-
Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags
-
Dayon, L., Hainard, A., Licker, V., Turck, N., Kuhn, K., Hochstrasser, D. F., Burkhard, P. R., and Sanchez, J.-C. (2008) Relative quantification of proteins in human cerebrospinal fluids by MS/MS using 6-plex isobaric tags. Anal. Chem. 80, 2921-2931
-
(2008)
Anal. Chem.
, vol.80
, pp. 2921-2931
-
-
Dayon, L.1
Hainard, A.2
Licker, V.3
Turck, N.4
Kuhn, K.5
Hochstrasser, D.F.6
Burkhard, P.R.7
Sanchez, J.-C.8
-
16
-
-
32344442813
-
Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics
-
Callister, S. J., Barry, R. C., Adkins, J. N., Johnson, E. T., Qian, W. J., Webb-Robertson, B.-J. M., Smith, R. D., and Lipton, M. S. (2006) Normalization approaches for removing systematic biases associated with mass spectrometry and label-free proteomics. J. Proteome Res. 5, 277-286
-
(2006)
J. Proteome Res.
, vol.5
, pp. 277-286
-
-
Callister, S.J.1
Barry, R.C.2
Adkins, J.N.3
Johnson, E.T.4
Qian, W.J.5
Webb-Robertson, B.-J.M.6
Smith, R.D.7
Lipton, M.S.8
-
17
-
-
82955187002
-
A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors
-
Webb-Robertson, B.-J., Matzke, M. M., Jacobs, J. M., Pounds, J. G., and Waters, K. M. (2011) A statistical selection strategy for normalization procedures in LC-MS proteomics experiments through dataset-dependent ranking of normalization scaling factors. Proteomics 11, 4736-4741
-
(2011)
Proteomics
, vol.11
, pp. 4736-4741
-
-
Webb-Robertson, B.-J.1
Matzke, M.M.2
Jacobs, J.M.3
Pounds, J.G.4
Waters, K.M.5
-
18
-
-
23144442824
-
Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides
-
Beynon, R. J., Doherty, M. K., Pratt, J. M., and Gaskell, S. J. (2005) Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides. Nat. Methods 2, 587-589
-
(2005)
Nat. Methods
, vol.2
, pp. 587-589
-
-
Beynon, R.J.1
Doherty, M.K.2
Pratt, J.M.3
Gaskell, S.J.4
-
19
-
-
78649640113
-
Developing a tissue-engineered model of the human bronchiole
-
Miller, C., George, S., and Niklason, L. (2010) Developing a tissue-engineered model of the human bronchiole. J. Tissue Eng. Regen. Med. 4, 619-627
-
(2010)
J. Tissue Eng. Regen. Med.
, vol.4
, pp. 619-627
-
-
Miller, C.1
George, S.2
Niklason, L.3
-
20
-
-
84878071789
-
Tissue specificity of decellularized rhesus monkey kidney and lung scaffolds
-
Nakayama, K. H., Lee, C. C., Batchelder, C. A., and Tarantal, A. F. (2013) Tissue specificity of decellularized rhesus monkey kidney and lung scaffolds. PLoS ONE 8, e64134
-
(2013)
PLoS ONE
, vol.8
, pp. e64134
-
-
Nakayama, K.H.1
Lee, C.C.2
Batchelder, C.A.3
Tarantal, A.F.4
-
21
-
-
71049119341
-
An in-solution ultrasonication-assisted digestion method for improved extracellular matrix proteome coverage
-
Hansen, K. C., Kiemele, L., Maller, O., O'Brien, J., Shankar, A., Fornetti, J., and Schedin, P. (2009) An in-solution ultrasonication-assisted digestion method for improved extracellular matrix proteome coverage. Mol. Cell. Proteomics 8, 1648-1657
-
(2009)
Mol. Cell. Proteomics
, vol.8
, pp. 1648-1657
-
-
Hansen, K.C.1
Kiemele, L.2
Maller, O.3
O'Brien, J.4
Shankar, A.5
Fornetti, J.6
Schedin, P.7
-
22
-
-
84885651630
-
Getting intimate with trypsin, the leading protease in proteomics
-
Vandermarliere, E., Mueller, M., and Martens, L. (2013) Getting intimate with trypsin, the leading protease in proteomics. Mass Spectrometry Rev. 32, 453-465
-
(2013)
Mass Spectrometry Rev.
, vol.32
, pp. 453-465
-
-
Vandermarliere, E.1
Mueller, M.2
Martens, L.3
-
23
-
-
79952115268
-
Protein extraction from solid tissue
-
Ericsson, C., and Nistér, M. (2011) Protein extraction from solid tissue. Methods Mol. Biol. 675, 307-312
-
(2011)
Methods Mol. Biol.
, vol.675
, pp. 307-312
-
-
Ericsson, C.1
Nistér, M.2
-
24
-
-
84893638283
-
Proteomic analysis of the extracellular matrix produced by mesenchymal stromal cells: Implications for cell therapy mechanism
-
Harvey, A., Yen, T.-Y., Aizman, I., Tate, C., and Case, C. (2013) Proteomic analysis of the extracellular matrix produced by mesenchymal stromal cells: Implications for cell therapy mechanism. PLoS ONE 8, e79283
-
(2013)
PLoS ONE
, vol.8
, pp. e79283
-
-
Harvey, A.1
Yen, T.-Y.2
Aizman, I.3
Tate, C.4
Case, C.5
-
25
-
-
84863395950
-
Changes in the chondrocyte and extracellular matrix proteome during post-natal mouse cartilage development
-
M111.014159
-
Wilson, R., Norris, E. L., Brachvogel, B., Angelucci, C., Zivkovic, S., Gordon, L., Bernardo, B. C., Stermann, J., Sekiguchi, K., Gorman, J. J., and Bateman, J. F. (2012) Changes in the chondrocyte and extracellular matrix proteome during post-natal mouse cartilage development. Mol. Cell. Proteomics 11, M111.014159
-
(2012)
Mol. Cell. Proteomics
, vol.11
-
-
Wilson, R.1
Norris, E.L.2
Brachvogel, B.3
Angelucci, C.4
Zivkovic, S.5
Gordon, L.6
Bernardo, B.C.7
Stermann, J.8
Sekiguchi, K.9
Gorman, J.J.10
Bateman, J.F.11
-
26
-
-
79959826381
-
Extracellular matrix dynamics in hepatocarcinogenesis: A comparative proteomics study of PDGFC transgenic and Pten null mouse models
-
Lai, K. K. Y., Shang, S., Lohia, N., Booth, G. C., Masse, D. J., Fausto, N., Campbell, J. S., and Beretta, L. (2011) Extracellular matrix dynamics in hepatocarcinogenesis: A comparative proteomics study of PDGFC transgenic and Pten null mouse models. PLoS Genetics 7, DOI: 10.1371/journal.pgen.1002147
-
(2011)
PLoS Genetics
, vol.7
-
-
Lai, K.K.Y.1
Shang, S.2
Lohia, N.3
Booth, G.C.4
Masse, D.J.5
Fausto, N.6
Campbell, J.S.7
Beretta, L.8
-
27
-
-
84878741907
-
Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse
-
Geiger, T., Velic, A., Macek, B., Lundberg, E., Kampf, C., Nagaraj, N., Uhlen, M., Cox, J., and Mann, M. (2013) Initial quantitative proteomic map of 28 mouse tissues using the SILAC mouse. Mol. Cell. Proteomics 12, 1709-1722
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 1709-1722
-
-
Geiger, T.1
Velic, A.2
Macek, B.3
Lundberg, E.4
Kampf, C.5
Nagaraj, N.6
Uhlen, M.7
Cox, J.8
Mann, M.9
-
28
-
-
84859823928
-
The matrisome: In silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices
-
M111.014647
-
Naba, A., Clauser, K. R., Hoersch, S., Liu, H., Carr, S. A., and Hynes, R. O. (2011) The matrisome: in silico definition and in vivo characterization by proteomics of normal and tumor extracellular matrices. Mol. Cell. Proteomics 11, M111.014647
-
(2011)
Mol. Cell. Proteomics
, vol.11
-
-
Naba, A.1
Clauser, K.R.2
Hoersch, S.3
Liu, H.4
Carr, S.A.5
Hynes, R.O.6
-
29
-
-
84872109220
-
Proteomic analysis of breast cancer tissues to identify biomarker candidates by gel-assisted digestion and label-free quantification methods using LC-MS/MS
-
Song, M.-N., Moon, P.-G., Lee, J.-E., Na, M., Kang, W., Chae, Y. S., Park, J.-Y., Park, H., and Baek, M.-C. (2012) Proteomic analysis of breast cancer tissues to identify biomarker candidates by gel-assisted digestion and label-free quantification methods using LC-MS/MS. Arch. Pharm. Res. 35, 1839-1847
-
(2012)
Arch. Pharm. Res.
, vol.35
, pp. 1839-1847
-
-
Song, M.-N.1
Moon, P.-G.2
Lee, J.-E.3
Na, M.4
Kang, W.5
Chae, Y.S.6
Park, J.-Y.7
Park, H.8
Baek, M.-C.9
-
30
-
-
84859519065
-
Comparative assessment of detergent-based protocols for mouse lung de-cellularization and recellularization
-
Wallis, J. M., Borg, Z. D., Daly, A. B., Deng, B., Ballif, B. A., Allen, G. B., Jaworski, D. M., and Weiss, D. J. (2012) Comparative assessment of detergent-based protocols for mouse lung de-cellularization and recellularization. Tissue Eng. Part C Methods 18, 420-432
-
(2012)
Tissue Eng. Part C Methods
, vol.18
, pp. 420-432
-
-
Wallis, J.M.1
Borg, Z.D.2
Daly, A.B.3
Deng, B.4
Ballif, B.A.5
Allen, G.B.6
Jaworski, D.M.7
Weiss, D.J.8
-
31
-
-
80355130208
-
Procedure for Lung Engineering
-
Calle, E. A., Petersen, T. H., and Niklason, L. E. (2011) Procedure for Lung Engineering. J. Visual. Experiment. 49, 1-6
-
(2011)
J. Visual. Experiment.
, vol.49
, pp. 1-6
-
-
Calle, E.A.1
Petersen, T.H.2
Niklason, L.E.3
-
32
-
-
43049127826
-
PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows
-
Deutsch, E. W., Lam, H., and Aebersold, R. (2008) PeptideAtlas: A resource for target selection for emerging targeted proteomics workflows. EMBO Rep. 9, 429-434
-
(2008)
EMBO Rep.
, vol.9
, pp. 429-434
-
-
Deutsch, E.W.1
Lam, H.2
Aebersold, R.3
-
33
-
-
11144320641
-
Open source system for analyzing, validating, and storing protein identification data
-
Craig, R., Cortens, J. P., and Beavis, R. C. (2004) Open source system for analyzing, validating, and storing protein identification data. J. Proteome Res. 3, 1234-1242
-
(2004)
J. Proteome Res.
, vol.3
, pp. 1234-1242
-
-
Craig, R.1
Cortens, J.P.2
Beavis, R.C.3
-
34
-
-
79960436501
-
Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy
-
Brownridge, P., Holman, S. W., Gaskell, S. J., Grant, C. M., Harman, V. M., Hubbard, S. J., Lanthaler, K., Lawless, C., O'Cualain, R., Sims, P., Watkins, R., and Beynon, R. J. (2011) Global absolute quantification of a proteome: Challenges in the deployment of a QconCAT strategy. Proteomics 11, 2957-2970
-
(2011)
Proteomics
, vol.11
, pp. 2957-2970
-
-
Brownridge, P.1
Holman, S.W.2
Gaskell, S.J.3
Grant, C.M.4
Harman, V.M.5
Hubbard, S.J.6
Lanthaler, K.7
Lawless, C.8
O'Cualain, R.9
Sims, P.10
Watkins, R.11
Beynon, R.J.12
-
35
-
-
80053925035
-
Absolute SILAC-compatible expression strain allows Sumo-2 copy number determination in clinical samples
-
Matic, I., Jaffray, E. G., Oxenham, S. K., Groves, M. J., Barratt, C. L. R., Tauro, S., Stanley-Wall, N. R., and Hay, R. T. (2011) Absolute SILAC-compatible expression strain allows Sumo-2 copy number determination in clinical samples. J. Proteome Res. 10, 4869-4875
-
(2011)
J. Proteome Res.
, vol.10
, pp. 4869-4875
-
-
Matic, I.1
Jaffray, E.G.2
Oxenham, S.K.3
Groves, M.J.4
Barratt, C.L.R.5
Tauro, S.6
Stanley-Wall, N.R.7
Hay, R.T.8
-
36
-
-
33847179916
-
Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
-
Pratt, J. M., Simpson, D. M., Doherty, M. K., Rivers, J., Gaskell, S. J., and Beynon, R. J. (2006) Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat. Protocols 1, 1029-1043
-
(2006)
Nat. Protocols
, vol.1
, pp. 1029-1043
-
-
Pratt, J.M.1
Simpson, D.M.2
Doherty, M.K.3
Rivers, J.4
Gaskell, S.J.5
Beynon, R.J.6
-
37
-
-
29244464778
-
Tube-gel digestion: A novel proteomic approach for high throughput analysis of membrane proteins
-
Lu, X., and Zhu, H. (2005) Tube-gel digestion: A novel proteomic approach for high throughput analysis of membrane proteins. Mol. Cell. Proteomics 4, 1948-1958
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1948-1958
-
-
Lu, X.1
Zhu, H.2
-
38
-
-
0037444512
-
Fast-response proteomics by accelerated in-gel digestion of proteins
-
Havlis, J., Thomas, H., Sebela, M., and Shevchenko, A. (2003) Fast-response proteomics by accelerated in-gel digestion of proteins. Anal. Chem. 75, 1300-1306
-
(2003)
Anal. Chem.
, vol.75
, pp. 1300-1306
-
-
Havlis, J.1
Thomas, H.2
Sebela, M.3
Shevchenko, A.4
-
39
-
-
77951965920
-
Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
-
MacLean, B., Tomazela, D. M., Shulman, N., Chambers, M., Finney, G. L., Frewen, B., Kern, R., Tabb, D. L., Liebler, D. C., and MacCoss, M. J. (2010) Skyline: An open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 26, 966-968
-
(2010)
Bioinformatics
, vol.26
, pp. 966-968
-
-
MacLean, B.1
Tomazela, D.M.2
Shulman, N.3
Chambers, M.4
Finney, G.L.5
Frewen, B.6
Kern, R.7
Tabb, D.L.8
Liebler, D.C.9
MacCoss, M.J.10
-
40
-
-
84891796097
-
Proteome-Xchange provides globally coordinated proteomics data submission and dissemination
-
Vizcaíno, J. A., Deutsch, E. W., Wang, R., Csordas, A., Reisinger, F., Ríos, D., Dianes, J. A., Sun, Z., Farrah, T., Bandeira, N., Binz, P.-A., Xenarios, I., Eisenacher, M., Mayer, G., Gatto, L., Campos, A., Chalkley, R. J., Kraus, H.-J., Albar, J. P., Martinez-Bartolomé, S., Apweiler, R., Omenn, G. S., Martens, L., Jones, A. R., and Hermjakob, H. (2014) Proteome-Xchange provides globally coordinated proteomics data submission and dissemination. Nat. Biotechnol. 32, 223-226
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 223-226
-
-
Vizcaíno, J.A.1
Deutsch, E.W.2
Wang, R.3
Csordas, A.4
Reisinger, F.5
Ríos, D.6
Dianes, J.A.7
Sun, Z.8
Farrah, T.9
Bandeira, N.10
Binz, P.-A.11
Xenarios, I.12
Eisenacher, M.13
Mayer, G.14
Gatto, L.15
Campos, A.16
Chalkley, R.J.17
Kraus, H.-J.18
Albar, J.P.19
Martinez-Bartolomé, S.20
Apweiler, R.21
Omenn, G.S.22
Martens, L.23
Jones, A.R.24
Hermjakob, H.25
more..
-
41
-
-
0001229909
-
Peer reviewed: A practical guide to analytical method validation
-
Green, J. M. (1996) Peer reviewed: A practical guide to analytical method validation. Anal. Chem. 68, 305A-309A
-
(1996)
Anal. Chem.
, vol.68
, pp. 305A-309A
-
-
Green, J.M.1
-
42
-
-
0038005018
-
DAVID: Database for annotation, visualization, and integrated discovery
-
Dennis, G., Jr., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., and Lempicki, R. A. (2003) DAVID: Database for annotation, visualization, and integrated discovery. Genome Biol. 4, P3
-
(2003)
Genome Biol.
, vol.4
, pp. P3
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
43
-
-
0021158358
-
Cross-linking in collagen and elastin
-
Eyre, D. R., Paz, M. A., and Gallop, P. M. (1984) Cross-linking in collagen and elastin. Annu. Rev. Biochem. 53, 717-748
-
(1984)
Annu. Rev. Biochem.
, vol.53
, pp. 717-748
-
-
Eyre, D.R.1
Paz, M.A.2
Gallop, P.M.3
-
44
-
-
85028119257
-
Matrix composition and mechanics of decellularized lung scaffolds
-
Petersen, T. H., Calle, E. A., Colehour, M. B., and Niklason, L. E. (2012) Matrix composition and mechanics of decellularized lung scaffolds. Cells Tissues Organs 195, 222-231
-
(2012)
Cells Tissues Organs
, vol.195
, pp. 222-231
-
-
Petersen, T.H.1
Calle, E.A.2
Colehour, M.B.3
Niklason, L.E.4
-
45
-
-
84881167439
-
Production and assessment of decellularized pig and human lung scaffolds
-
Nichols, J. E., Niles, J., Riddle, M., Vargas, G., Schilagard, T., Ma, L., Edward, K., La Francesca, S., Sakamoto, J., Vega, S., Ogadegbe, M., Mlcak, R., Deyo, D., Woodson, L., McQuitty, C., Lick, S., Beckles, D., Melo, E., and Cortiella, J. (2013) Production and assessment of decellularized pig and human lung scaffolds. Tissue Eng. Part A 19, 2045-2062
-
(2013)
Tissue Eng. Part A
, vol.19
, pp. 2045-2062
-
-
Nichols, J.E.1
Niles, J.2
Riddle, M.3
Vargas, G.4
Schilagard, T.5
Ma, L.6
Edward, K.7
La Francesca, S.8
Sakamoto, J.9
Vega, S.10
Ogadegbe, M.11
Mlcak, R.12
Deyo, D.13
Woodson, L.14
McQuitty, C.15
Lick, S.16
Beckles, D.17
Melo, E.18
Cortiella, J.19
-
46
-
-
84868274448
-
Acellular normal and fibrotic human lung matrices as a culture system for in vitro investigation
-
Booth, A. J., Hadley, R., Cornett, A. M., Dreffs, A. A., Matthes, S. A., Tsui, J. L., Weiss, K., Horowitz, J. C., Fiore, V. F., Barker, T. H., Moore, B. B., Martinez, F. J., Niklason, L. E., and White, E. S. (2012) Acellular normal and fibrotic human lung matrices as a culture system for in vitro investigation. Am. J. Respir. Crit. Care Med. 186, 866-876
-
(2012)
Am. J. Respir. Crit. Care Med.
, vol.186
, pp. 866-876
-
-
Booth, A.J.1
Hadley, R.2
Cornett, A.M.3
Dreffs, A.A.4
Matthes, S.A.5
Tsui, J.L.6
Weiss, K.7
Horowitz, J.C.8
Fiore, V.F.9
Barker, T.H.10
Moore, B.B.11
Martinez, F.J.12
Niklason, L.E.13
White, E.S.14
-
47
-
-
77956081242
-
Development of a decellularized lung bioreactor system for bioengineering the lung: The matrix reloaded
-
Price, A. P., England, K. A., Matson, A. M., Blazar, B. R., and Panoskaltsis-Mortari, A. (2010) Development of a decellularized lung bioreactor system for bioengineering the lung: The matrix reloaded. Tissue Eng. Part A 16, 2581-2591
-
(2010)
Tissue Eng. Part A
, vol.16
, pp. 2581-2591
-
-
Price, A.P.1
England, K.A.2
Matson, A.M.3
Blazar, B.R.4
Panoskaltsis-Mortari, A.5
-
48
-
-
84881369251
-
A simple dot-blot-Sirius red-based assay for collagen quantification
-
Rodríguez-Rodríguez, P., Arribas, S. M., de Pablo, A. L., González, M. C., Abderrahim, F., and Condezo-Hoyos, L. (2013) A simple dot-blot-Sirius red-based assay for collagen quantification. Anal Bioanal Chem 405, 6863-6871
-
(2013)
Anal Bioanal Chem
, vol.405
, pp. 6863-6871
-
-
Rodríguez-Rodríguez, P.1
Arribas, S.M.2
De Pablo, A.L.3
González, M.C.4
Abderrahim, F.5
Condezo-Hoyos, L.6
-
49
-
-
84877133620
-
Sources of technical variability in quantitative LC-MS proteomics: Human brain tissue sample analysis
-
2013
-
Piehowski, P. D., Petyuk, V., Orton, D. J., Xie, F., Moore, R. J., Ramirez-Restrepo, M., Engel, A., Lieberman, A. P., Albin, R. L., Camp, D. G., Smith, R. D., and Myers, A. J. (2013) (2013) Sources of technical variability in quantitative LC-MS proteomics: Human brain tissue sample analysis. J. Proteome Res. 12, 2128-2137
-
(2013)
J. Proteome Res.
, vol.12
, pp. 2128-2137
-
-
Piehowski, P.D.1
Petyuk, V.2
Orton, D.J.3
Xie, F.4
Moore, R.J.5
Ramirez-Restrepo, M.6
Engel, A.7
Lieberman, A.P.8
Albin, R.L.9
Camp, D.G.10
Smith, R.D.11
Myers, A.J.12
-
50
-
-
0016830522
-
Isolation and characterization of CNBr peptides of human (alpha 1 (III)) 3 collagen and tissue distribution of (alpha 1 (I)) 2 alpha 2 and (alpha 1 (III)) 3 collagens
-
Epstein, E. H., Jr., and Munderloh, N. H. (1975) Isolation and characterization of CNBr peptides of human (alpha 1 (III)) 3 collagen and tissue distribution of (alpha 1 (I)) 2 alpha 2 and (alpha 1 (III)) 3 collagens. J. Biol. Chem. 250, 9304-9312
-
(1975)
J. Biol. Chem.
, vol.250
, pp. 9304-9312
-
-
Epstein, E.H.1
Munderloh, N.H.2
-
51
-
-
0033518556
-
Top Down versus Bottom Up Protein Characterization by Tandem High-Resolution Mass Spectrometry
-
Kelleher, N. L., Lin, H. Y., Valaskovic, G. A., Aaserud, D. J., Fridriksson, E. K., and McLafferty, F. W. (1999) Top Down versus Bottom Up Protein Characterization by Tandem High-Resolution Mass Spectrometry. J. Am. Chem. Soc. 121, 806-812
-
(1999)
J. Am. Chem. Soc.
, vol.121
, pp. 806-812
-
-
Kelleher, N.L.1
Lin, H.Y.2
Valaskovic, G.A.3
Aaserud, D.J.4
Fridriksson, E.K.5
McLafferty, F.W.6
-
52
-
-
78651261980
-
A combination method of chemical with enzyme reactions for identification of membrane proteins
-
Lee, J.-E., Kwon, J., and Baek, M.-C. (2011) A combination method of chemical with enzyme reactions for identification of membrane proteins. Biochim. Biophys. Acta 1814, 397-404
-
(2011)
Biochim. Biophys. Acta
, vol.1814
, pp. 397-404
-
-
Lee, J.-E.1
Kwon, J.2
Baek, M.-C.3
-
53
-
-
77954523086
-
Options and considerations when selecting a quantitative proteomics strategy
-
Domon, B., and Aebersold, R. (2010) Options and considerations when selecting a quantitative proteomics strategy. Nat. Biotechnol. 28, 710-721
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 710-721
-
-
Domon, B.1
Aebersold, R.2
-
54
-
-
84860345141
-
Quantification of protein incorporated into electrospun polycaprolactone tissue engineering scaffolds
-
Zander, N. E., Orlicki, J. A., Rawlett, A. M., and Beebe, Jr., T. P. (2012) Quantification of protein incorporated into electrospun polycaprolactone tissue engineering scaffolds. ACS Appl. Mater. Interfaces 4, 2074-2081
-
(2012)
ACS Appl. Mater. Interfaces
, vol.4
, pp. 2074-2081
-
-
Zander, N.E.1
Orlicki, J.A.2
Rawlett, A.M.3
Beebe, T.P.4
-
55
-
-
84864987862
-
The use of selected reaction monitoring in quantitative proteomics
-
Holman, S. W., Sims, P. F., and Eyers, C. E. (2012) The use of selected reaction monitoring in quantitative proteomics. Bioanalysis 4, 1763-1786
-
(2012)
Bioanalysis
, vol.4
, pp. 1763-1786
-
-
Holman, S.W.1
Sims, P.F.2
Eyers, C.E.3
-
56
-
-
13444260275
-
The absolute quantification strategy: A general procedure for the quantification of proteins and post-translational modifications
-
Kirkpatrick, D. S., Gerber, S. A., and Gygi, S. P. (2005) The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods 35, 265-273
-
(2005)
Methods
, vol.35
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
-
57
-
-
33644524918
-
Mass spectrometry-based proteomics turns quantitative
-
Ong, S.-E., and Mann, M. (2005) Mass spectrometry-based proteomics turns quantitative. Nat. Chem. Biol. 1, 252-262
-
(2005)
Nat. Chem. Biol.
, vol.1
, pp. 252-262
-
-
Ong, S.-E.1
Mann, M.2
-
58
-
-
42649091860
-
Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics
-
Mirzaei, H., McBee, J. K., Watts, J., and Aebersold, R. (2008) Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Mol. Cell. Proteomics 7, 813-823
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 813-823
-
-
Mirzaei, H.1
McBee, J.K.2
Watts, J.3
Aebersold, R.4
-
59
-
-
0346668199
-
Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards
-
Barnidge, D. R., Dratz, E. A., Martin, T., Bonilla, L. E., Moran, L. B., and Lindall, A. (2003) Absolute quantification of the G protein-coupled receptor rhodopsin by LC/MS/MS using proteolysis product peptides and synthetic peptide standards. Anal. Chem. 75, 445-451
-
(2003)
Anal. Chem.
, vol.75
, pp. 445-451
-
-
Barnidge, D.R.1
Dratz, E.A.2
Martin, T.3
Bonilla, L.E.4
Moran, L.B.5
Lindall, A.6
-
60
-
-
84899831465
-
Trends in QconCATs for targeted proteomics
-
Chen, J., and Turko, I. V. (2014) Trends in QconCATs for targeted proteomics. Trends Anal. Chem. 57, 1-5
-
(2014)
Trends Anal. Chem.
, vol.57
, pp. 1-5
-
-
Chen, J.1
Turko, I.V.2
-
61
-
-
84863875404
-
Fibronectins, their fibrillogenesis, and in vivo functions
-
Schwarzbauer, J. E., and DeSimone, D. W. (2011) Fibronectins, their fibrillogenesis, and in vivo functions. Cold Spring Harb. Perspect. Biol. 3, DOI: 10.1101/cshperspect.a005041
-
(2011)
Cold Spring Harb. Perspect. Biol.
, vol.3
-
-
Schwarzbauer, J.E.1
DeSimone, D.W.2
-
62
-
-
0027305435
-
Type IV collagen, laminin, and fibronectin promote the adhesion and migration of rabbit lens epithelial cells in vitro
-
Olivero, D. K., and Furcht, L. T. (1993) Type IV collagen, laminin, and fibronectin promote the adhesion and migration of rabbit lens epithelial cells in vitro. Invest. Ophthalmol. Vis. Sci. 34, 2825-2834
-
(1993)
Invest. Ophthalmol. Vis. Sci.
, vol.34
, pp. 2825-2834
-
-
Olivero, D.K.1
Furcht, L.T.2
-
63
-
-
0025293529
-
Integrin receptors on aortic smooth muscle cells mediate adhesion to fibronectin, laminin, and collagen
-
Clyman, R. I., McDonald, K. A., and Kramer, R. H. (1990) Integrin receptors on aortic smooth muscle cells mediate adhesion to fibronectin, laminin, and collagen. Circ. Res. 67, 175-186
-
(1990)
Circ. Res.
, vol.67
, pp. 175-186
-
-
Clyman, R.I.1
McDonald, K.A.2
Kramer, R.H.3
-
64
-
-
0025748803
-
Type IV collagen and corneal epithelial adhesion and migration. Effects of type IV collagen fragments and synthetic peptides on rabbit corneal epithelial cell adhesion and migration in vitro
-
Cameron, J. D., Skubitz, A. P., and Furcht, L. T. (1991) Type IV collagen and corneal epithelial adhesion and migration. Effects of type IV collagen fragments and synthetic peptides on rabbit corneal epithelial cell adhesion and migration in vitro. Invest. Ophthalmol. Vis. Sci. 32, 2766-2773
-
(1991)
Invest. Ophthalmol. Vis. Sci.
, vol.32
, pp. 2766-2773
-
-
Cameron, J.D.1
Skubitz, A.P.2
Furcht, L.T.3
-
65
-
-
0030753192
-
A cell binding domain from the -3 chain of type IV collagen inhibits proliferation of melanoma cells
-
Han, J., Ohno, N., Pasco, S., Monboisse, J.-C., Borel, J. P., and Kefalides, N. A. (1997) A cell binding domain from the -3 chain of type IV collagen inhibits proliferation of melanoma cells. J. Biol. Chem. 272, 20395-20401
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 20395-20401
-
-
Han, J.1
Ohno, N.2
Pasco, S.3
Monboisse, J.-C.4
Borel, J.P.5
Kefalides, N.A.6
-
66
-
-
0025881189
-
Characterization of a type IV collagen major cell binding site with affinity to the alpha 1 beta 1 and the alpha 2 beta 1 integrins
-
Vandenberg, P., Kern, A., Ries, A., Luckenbill-Edds, L., Mann, K., and Kühn, K. (1991) Characterization of a type IV collagen major cell binding site with affinity to the alpha 1 beta 1 and the alpha 2 beta 1 integrins. J. Cell Biol. 113, 1475-1483
-
(1991)
J. Cell Biol.
, vol.113
, pp. 1475-1483
-
-
Vandenberg, P.1
Kern, A.2
Ries, A.3
Luckenbill-Edds, L.4
Mann, K.5
Kühn, K.6
-
67
-
-
59949086411
-
Type IV collagen alpha chains of the basement membrane in the rat bronchioalveolar transitional segment
-
Hinenoya, N., Naito, I., Momota, R., Sado, Y., Kumagishi, K., Ninomiya, Y., and Ohtsuka, A. (2008) Type IV collagen alpha chains of the basement membrane in the rat bronchioalveolar transitional segment. Arch. Histol. Cytol. 71, 185-194
-
(2008)
Arch. Histol. Cytol.
, vol.71
, pp. 185-194
-
-
Hinenoya, N.1
Naito, I.2
Momota, R.3
Sado, Y.4
Kumagishi, K.5
Ninomiya, Y.6
Ohtsuka, A.7
-
68
-
-
0024371685
-
Basement membrane collagen in the kidney: Regional localization of novel chains related to collagen IV
-
Butkowski, R. J., Wieslander, J., Kleppel, M., Michael, A. F., and Fish, A. J. (1989) Basement membrane collagen in the kidney: regional localization of novel chains related to collagen IV. Kidney Int. 35, 1195-1202
-
(1989)
Kidney Int.
, vol.35
, pp. 1195-1202
-
-
Butkowski, R.J.1
Wieslander, J.2
Kleppel, M.3
Michael, A.F.4
Fish, A.J.5
-
69
-
-
33644620397
-
Lung development in laminin gamma2 deficiency: Abnormal tracheal hemidesmosomes with normal branching morphogenesis and epithelial differentiation
-
Nguyen, N. M., Pulkkinen, L., Schlueter, J. A., Meneguzzi, G., Uitto, J., and Senior, R. M. (2006) Lung development in laminin gamma2 deficiency: Abnormal tracheal hemidesmosomes with normal branching morphogenesis and epithelial differentiation. Respir. Res. 7, 28
-
(2006)
Respir. Res.
, vol.7
, pp. 28
-
-
Nguyen, N.M.1
Pulkkinen, L.2
Schlueter, J.A.3
Meneguzzi, G.4
Uitto, J.5
Senior, R.M.6
-
70
-
-
33744995986
-
Laminin isoforms and lung development: All isoforms are not equal
-
Nguyen, N. M., and Senior, R. M. (2006) Laminin isoforms and lung development: all isoforms are not equal. Dev. Biol. 294, 271-279
-
(2006)
Dev. Biol.
, vol.294
, pp. 271-279
-
-
Nguyen, N.M.1
Senior, R.M.2
-
71
-
-
19944430200
-
Mechanical interactions between collagen and proteoglycans: Implications for the stability of lung tissue
-
Cavalcante, F. S., Ito, S., Brewer, K., Sakai, H., Alencar, A. M., Almeida, M. P., Andrade, J. S., Jr., Majumdar, A., Ingenito, E. P., and Suki, B. (2005) Mechanical interactions between collagen and proteoglycans: Implications for the stability of lung tissue. J. Appl. Physiol. 98, 672-679
-
(2005)
J. Appl. Physiol.
, vol.98
, pp. 672-679
-
-
Cavalcante, F.S.1
Ito, S.2
Brewer, K.3
Sakai, H.4
Alencar, A.M.5
Almeida, M.P.6
Andrade, J.S.7
Majumdar, A.8
Ingenito, E.P.9
Suki, B.10
-
72
-
-
85028119257
-
Matrix composition and mechanics of decellularized lung scaffolds
-
Petersen, T. H., Calle, E. A., Colehour, M. B., and Niklason, L. E. (2012) Matrix composition and mechanics of decellularized lung scaffolds. Cells Tissues Organs 195, 222-231
-
(2012)
Cells Tissues Organs
, vol.195
, pp. 222-231
-
-
Petersen, T.H.1
Calle, E.A.2
Colehour, M.B.3
Niklason, L.E.4
-
73
-
-
79961088512
-
Organ engineering based on decellularized matrix scaffolds
-
Song, J. J., and Ott, H. C. (2011) Organ engineering based on decellularized matrix scaffolds. Trends Mol. Med. 17, 424-432
-
(2011)
Trends Mol. Med.
, vol.17
, pp. 424-432
-
-
Song, J.J.1
Ott, H.C.2
|