메뉴 건너뛰기




Volumn 35, Issue 10, 2012, Pages 1839-1847

Proteomic analysis of breast cancer tissues to identify biomarker candidates by gel-assisted digestion and label-free quantification methods using LC-MS/MS

Author keywords

Biomarker candidates; Breast cancer; Ductal carcinoma in situ; LCMS MS; Proteomics

Indexed keywords

BIOLOGICAL MARKER; CALRETICULIN; PROTEIN DISULFIDE ISOMERASE; PROTEIN DISULFIDE ISOMERASE A3; UNCLASSIFIED DRUG;

EID: 84872109220     PISSN: 02536269     EISSN: 19763786     Source Type: Journal    
DOI: 10.1007/s12272-012-1018-6     Document Type: Article
Times cited : (39)

References (36)
  • 5
    • 60849093488 scopus 로고    scopus 로고
    • Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis
    • Bouchal, P., Roumeliotis, T., Hrstka, R., Nenutil, R., Vojtesek, B., and Garbis, S. D., Biomarker discovery in low-grade breast cancer using isobaric stable isotope tags and two-dimensional liquid chromatography-tandem mass spectrometry (iTRAQ-2DLC-MS/MS) based quantitative proteomic analysis. J. Proteome. Res., 8, 362-373 (2009).
    • (2009) J. Proteome. Res. , vol.8 , pp. 362-373
    • Bouchal, P.1    Roumeliotis, T.2    Hrstka, R.3    Nenutil, R.4    Vojtesek, B.5    Garbis, S.D.6
  • 6
    • 0028175496 scopus 로고
    • L- and M2-pyruvate kinase expression in renal cell carcinomas and their metastases
    • Brinck, U., Eigenbrodt, E., Oehmke, M., Mazurek, S., and Fischer, G., L- and M2-pyruvate kinase expression in renal cell carcinomas and their metastases. Virchows Arch., 424, 177-185 (1994).
    • (1994) Virchows Arch. , vol.424 , pp. 177-185
    • Brinck, U.1    Eigenbrodt, E.2    Oehmke, M.3    Mazurek, S.4    Fischer, G.5
  • 7
    • 0018128603 scopus 로고
    • Lactate dehydrogenase in estrogen-responsive human breast cancer cells
    • Burke, R. E., Harris, S. C., and Mcguire, W. L., Lactate dehydrogenase in estrogen-responsive human breast cancer cells. Cancer Res., 38, 2773-2776 (1978).
    • (1978) Cancer Res. , vol.38 , pp. 2773-2776
    • Burke, R.E.1    Harris, S.C.2    McGuire, W.L.3
  • 8
    • 84862951708 scopus 로고    scopus 로고
    • In-depth identification of pathways related to cisplatininduced hepatotoxicity through an integrative method based on an informatics-assisted label-free protein quantitation and microarray gene expression approach
    • Cho, Y. E., Singh, T. S., Lee, H. C., Moon, P. G., Lee, J. E., Lee, M. H., Choi, E. C., Chen, Y. J., Kim, S. H., and Baek, M. C., In-depth identification of pathways related to cisplatininduced hepatotoxicity through an integrative method based on an informatics-assisted label-free protein quantitation and microarray gene expression approach. Mol. Cell. Proteomics., 11, M111.010884 (2012).
    • (2012) Mol. Cell. Proteomics. , vol.11
    • Cho, Y.E.1    Singh, T.S.2    Lee, H.C.3    Moon, P.G.4    Lee, J.E.5    Lee, M.H.6    Choi, E.C.7    Chen, Y.J.8    Kim, S.H.9    Baek, M.C.10
  • 10
    • 0017200419 scopus 로고
    • Purification and properties of pyruvate kinase from human lung
    • Corcoran, E., Phelan, J. J., and Fottrell, P. F., Purification and properties of pyruvate kinase from human lung. Biochim. Biophys. Acta, 446, 96-104 (1976).
    • (1976) Biochim. Biophys. Acta , vol.446 , pp. 96-104
    • Corcoran, E.1    Phelan, J.J.2    Fottrell, P.F.3
  • 11
    • 0029903843 scopus 로고    scopus 로고
    • Analysis of polypeptide expression in benign and malignant human breast lesions: Down-regulation of cytokeratins
    • Franzen, B., Linder, S., Alaiya, A. A., Eriksson, E., Uruy, K., Hirano, T., Okuzawa, K., and Auer, G., Analysis of polypeptide expression in benign and malignant human breast lesions: down-regulation of cytokeratins. Br. J. Cancer, 74, 1632-1638 (1996).
    • (1996) Br. J. Cancer , vol.74 , pp. 1632-1638
    • Franzen, B.1    Linder, S.2    Alaiya, A.A.3    Eriksson, E.4    Uruy, K.5    Hirano, T.6    Okuzawa, K.7    Auer, G.8
  • 12
    • 29244474572 scopus 로고    scopus 로고
    • Impaired assembly of the major histocompatibility complex class i peptide-loading complex in mice deficient in the oxidoreductase ERp57
    • Garbi, N., Tanaka, S., Momburg, F., and Hammerling, G. J., Impaired assembly of the major histocompatibility complex class I peptide-loading complex in mice deficient in the oxidoreductase ERp57. Nat. Immunol., 7, 93-102 (2006).
    • (2006) Nat. Immunol. , vol.7 , pp. 93-102
    • Garbi, N.1    Tanaka, S.2    Momburg, F.3    Hammerling, G.J.4
  • 13
    • 55049129918 scopus 로고    scopus 로고
    • A multiplexed quantitative strategy for membrane proteomics: Opportunities for mining therapeutic targets for autosomal dominant polycystic kidney disease
    • Han, C. L., Chien, C. W., Chen, W. C., Chen, Y. R., Wu, C. P., Li, H., and Chen, Y. J., A multiplexed quantitative strategy for membrane proteomics: opportunities for mining therapeutic targets for autosomal dominant polycystic kidney disease. Mol. Cell. Proteomics., 7, 1983-1997 (2008).
    • (2008) Mol. Cell. Proteomics. , vol.7 , pp. 1983-1997
    • Han, C.L.1    Chien, C.W.2    Chen, W.C.3    Chen, Y.R.4    Wu, C.P.5    Li, H.6    Chen, Y.J.7
  • 14
    • 0032518864 scopus 로고    scopus 로고
    • Induction of calreticulin expression in response to amino acid deprivation in Chinese hamster ovary cells
    • Heal, R. and McGivan, J., Induction of calreticulin expression in response to amino acid deprivation in Chinese hamster ovary cells. Biochem. J., 329 (Pt 2), 389-394 (1998).
    • (1998) Biochem. J. , vol.329 , Issue.PART 2 , pp. 389-394
    • Heal, R.1    McGivan, J.2
  • 15
    • 0028198372 scopus 로고
    • Localization of the gene encoding human BiP/GRP78, the endoplasmic reticulum cognate of the HSP70 family, to chromosome 9q34
    • Hendershot, L. M., Valentine, V. A., Lee, A. S., Morris, S. W., and Shapiro, D. N., Localization of the gene encoding human BiP/GRP78, the endoplasmic reticulum cognate of the HSP70 family, to chromosome 9q34. Genomics, 20, 281-284 (1994).
    • (1994) Genomics , vol.20 , pp. 281-284
    • Hendershot, L.M.1    Valentine, V.A.2    Lee, A.S.3    Morris, S.W.4    Shapiro, D.N.5
  • 18
    • 0022245562 scopus 로고
    • Pancreatic islets contain the M2 isoenzyme of pyruvate kinase. Its phosphorylation has no effect on enzyme activity
    • Macdonald, M. J. and Chang, C. M., Pancreatic islets contain the M2 isoenzyme of pyruvate kinase. Its phosphorylation has no effect on enzyme activity. Mol. Cell. Biochem., 68, 115-120 (1985).
    • (1985) Mol. Cell. Biochem. , vol.68 , pp. 115-120
    • MacDonald, M.J.1    Chang, C.M.2
  • 19
    • 0033460216 scopus 로고    scopus 로고
    • Calreticulin: One protein, one gene, many functions
    • Michalak, M., Corbett, E. F., Mesaeli, N., Nakamura, K., and Opas, M., Calreticulin: one protein, one gene, many functions. Biochem. J., 344 Pt 2, 281-292 (1999).
    • (1999) Biochem. J. , vol.344 , Issue.PART 2 , pp. 281-292
    • Michalak, M.1    Corbett, E.F.2    Mesaeli, N.3    Nakamura, K.4    Opas, M.5
  • 21
    • 0015955240 scopus 로고
    • Isolation of a high affinity calcium-binding protein from sarcoplasmic reticulum
    • Ostwald, T. J. and Maclennan, D. H., Isolation of a high affinity calcium-binding protein from sarcoplasmic reticulum. J. Biol. Chem., 249, 974-979 (1974).
    • (1974) J. Biol. Chem. , vol.249 , pp. 974-979
    • Ostwald, T.J.1    MacLennan, D.H.2
  • 23
    • 0035977203 scopus 로고    scopus 로고
    • On the birth of breast cancer
    • Polyak, K., On the birth of breast cancer. Biochim. Biophys. Acta, 1552, 1-13 (2001).
    • (2001) Biochim. Biophys. Acta , vol.1552 , pp. 1-13
    • Polyak, K.1
  • 24
    • 0029019816 scopus 로고
    • Enhanced expression of calreticulin in the nucleus of radioresistant squamous carcinoma cells in response to ionizing radiation
    • Ramsamooj, P., Notario, V., and Dritschilo, A., Enhanced expression of calreticulin in the nucleus of radioresistant squamous carcinoma cells in response to ionizing radiation. Cancer Res., 55, 3016-3021 (1995).
    • (1995) Cancer Res. , vol.55 , pp. 3016-3021
    • Ramsamooj, P.1    Notario, V.2    Dritschilo, A.3
  • 25
    • 0019487346 scopus 로고
    • Immunohistological demonstration of the same type of pyruvate kinase isoenzyme (M2-Pk) in tumors of chicken and rat
    • Reinacher, M. and Eigenbrodt, E., Immunohistological demonstration of the same type of pyruvate kinase isoenzyme (M2-Pk) in tumors of chicken and rat. Virchows Arch. B Cell Pathol. Incl. Mol. Pathol., 37, 79-88 (1981).
    • (1981) Virchows Arch. B Cell Pathol. Incl. Mol. Pathol. , vol.37 , pp. 79-88
    • Reinacher, M.1    Eigenbrodt, E.2
  • 26
    • 0033258384 scopus 로고    scopus 로고
    • Cellular basis of breast cancer susceptibility
    • Russo, J. and Russo, I. H., Cellular basis of breast cancer susceptibility. Oncol. Res., 11, 169-178 (1999).
    • (1999) Oncol. Res. , vol.11 , pp. 169-178
    • Russo, J.1    Russo, I.H.2
  • 27
    • 0020476194 scopus 로고
    • Purification and properties of pyruvate kinase type M2 from rat lung
    • Schering, B., Eigenbrodt, E., Linder, D., and Schoner, W., Purification and properties of pyruvate kinase type M2 from rat lung. Biochim. Biophys. Acta, 717, 337-347 (1982).
    • (1982) Biochim. Biophys. Acta , vol.717 , pp. 337-347
    • Schering, B.1    Eigenbrodt, E.2    Linder, D.3    Schoner, W.4
  • 28
    • 33244470396 scopus 로고    scopus 로고
    • Changing patterns in the clinical characteristics of Korean patients with breast cancer during the last 15 years
    • Son, B. H., Kwak, B. S., Kim, J. K., Kim, H. J., Hong, S. J., Lee, J. S., Hwang, U. K., Yoon, H. S., and Ahn, S. H., Changing patterns in the clinical characteristics of Korean patients with breast cancer during the last 15 years. Arch. Surg., 141, 155-160 (2006).
    • (2006) Arch. Surg. , vol.141 , pp. 155-160
    • Son, B.H.1    Kwak, B.S.2    Kim, J.K.3    Kim, H.J.4    Hong, S.J.5    Lee, J.S.6    Hwang, U.K.7    Yoon, H.S.8    Ahn, S.H.9
  • 30
    • 0023890443 scopus 로고
    • Human gene encoding the 78,000- dalton glucose-regulated protein and its pseudogene: Structure, conservation, and regulation
    • Ting, J. and Lee, A. S., Human gene encoding the 78,000- dalton glucose-regulated protein and its pseudogene: structure, conservation, and regulation. DNA, 7, 275-286 (1988).
    • (1988) DNA , vol.7 , pp. 275-286
    • Ting, J.1    Lee, A.S.2
  • 31
    • 0017172506 scopus 로고
    • Pyruvate kinase isozymes in neurons, glia, neuroblastoma, and glioblastoma
    • Tolle, S. W., Dyson, R. D., Newburgh, R. W., and Cardenas, J. M., Pyruvate kinase isozymes in neurons, glia, neuroblastoma, and glioblastoma. J. Neurochem., 27, 1355-1360 (1976).
    • (1976) J. Neurochem. , vol.27 , pp. 1355-1360
    • Tolle, S.W.1    Dyson, R.D.2    Newburgh, R.W.3    Cardenas, J.M.4
  • 32
    • 0032848854 scopus 로고    scopus 로고
    • Evidence for in vitro selection during cell culturing of breast cancer: Detection by flow and image cytometry
    • Truong, K., Guilly, M. N., Gerbault-Seureau, M., Malfoy, B., Vielh, P., and Dutrillaux, B., Evidence for in vitro selection during cell culturing of breast cancer: detection by flow and image cytometry. Cancer Genet. Cytogenet., 114, 154- 155 (1999).
    • (1999) Cancer Genet. Cytogenet. , vol.114 , pp. 154-155
    • Truong, K.1    Guilly, M.N.2    Gerbault-Seureau, M.3    Malfoy, B.4    Vielh, P.5    Dutrillaux, B.6
  • 33
    • 76649139789 scopus 로고    scopus 로고
    • IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation
    • Tsou, C. C., Tsai, C. F., Tsui, Y. H., Sudhir, P. R., Wang, Y. T., Chen, Y. J., Chen, J. Y., Sung, T. Y., and Hsu, W. L., IDEAL-Q, an automated tool for label-free quantitation analysis using an efficient peptide alignment approach and spectral data validation. Mol. Cell. Proteomics., 9, 131-144 (2010).
    • (2010) Mol. Cell. Proteomics. , vol.9 , pp. 131-144
    • Tsou, C.C.1    Tsai, C.F.2    Tsui, Y.H.3    Sudhir, P.R.4    Wang, Y.T.5    Chen, Y.J.6    Chen, J.Y.7    Sung, T.Y.8    Hsu, W.L.9
  • 35
    • 0034652696 scopus 로고    scopus 로고
    • Nuclear matrix of calreticulin in hepatocellular carcinoma
    • Yoon, G. S., Lee, H., Jung, Y., Yu, E., Moon, H. B., Song, K., and Lee, I., Nuclear matrix of calreticulin in hepatocellular carcinoma. Cancer Res., 60, 1117-1120 (2000).
    • (2000) Cancer Res. , vol.60 , pp. 1117-1120
    • Yoon, G.S.1    Lee, H.2    Jung, Y.3    Yu, E.4    Moon, H.B.5    Song, K.6    Lee, I.7
  • 36
    • 0033811241 scopus 로고    scopus 로고
    • Identification of differentially expressed proteins between human hepatoma and normal liver cell lines by two-dimensional electrophoresis and liquid chromatography- ion trap mass spectrometry
    • Yu, L. R., Zeng, R., Shao, X. X., Wang, N., Xu, Y. H., and Xia, Q. C., Identification of differentially expressed proteins between human hepatoma and normal liver cell lines by two-dimensional electrophoresis and liquid chromatography- ion trap mass spectrometry. Electrophoresis, 21, 3058-3068 (2000).
    • (2000) Electrophoresis , vol.21 , pp. 3058-3068
    • Yu, L.R.1    Zeng, R.2    Shao, X.X.3    Wang, N.4    Xu, Y.H.5    Xia, Q.C.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.