-
1
-
-
48849116981
-
The speciation of the proteome
-
Jungblut, P. R., Holzhutter, H. G., Apweiler, R., Schluter, H., The speciation of the proteome. Chem. Cent. J. 2008, 2, 16.
-
(2008)
Chem. Cent. J.
, vol.2
, pp. 16
-
-
Jungblut, P.R.1
Holzhutter, H.G.2
Apweiler, R.3
Schluter, H.4
-
2
-
-
79960251454
-
Adaptation of proteomic techniques for the identification and characterization of protein species from murine heart
-
Schwab, K., Neumann, B., Scheler, C., Jungblut, P. R., Theuring, F., Adaptation of proteomic techniques for the identification and characterization of protein species from murine heart. Amino Acids 2011, 41, 401-414.
-
(2011)
Amino Acids
, vol.41
, pp. 401-414
-
-
Schwab, K.1
Neumann, B.2
Scheler, C.3
Jungblut, P.R.4
Theuring, F.5
-
3
-
-
0142215475
-
Global analysis of protein expression in yeast
-
Ghaemmaghami, S., Huh, W. K., Bower, K., Howson, R. W. et al., Global analysis of protein expression in yeast. Nature 2003, 425, 737-741.
-
(2003)
Nature
, vol.425
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.K.2
Bower, K.3
Howson, R.W.4
-
4
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
-
Newman, J. R., Ghaemmaghami, S., Ihmels, J., Breslow, D. K. et al., Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature 2006, 441, 840-846.
-
(2006)
Nature
, vol.441
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
-
5
-
-
34748916981
-
Quantitative mass spectrometry in proteomics: a critical review
-
Bantscheff, M., Schirle, M., Sweetman, G., Rick, J., Kuster, B., Quantitative mass spectrometry in proteomics: a critical review. Anal. Bioanal. Chem. 2007, 389, 1017-1031.
-
(2007)
Anal. Bioanal. Chem.
, vol.389
, pp. 1017-1031
-
-
Bantscheff, M.1
Schirle, M.2
Sweetman, G.3
Rick, J.4
Kuster, B.5
-
6
-
-
78649823422
-
The importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics
-
Li, Y. F., Arnold, R. J., Tang, H., Radivojac, P., The importance of peptide detectability for protein identification, quantification, and experiment design in MS/MS proteomics. J. Proteome Res. 2010, 9, 6288-6297.
-
(2010)
J. Proteome Res.
, vol.9
, pp. 6288-6297
-
-
Li, Y.F.1
Arnold, R.J.2
Tang, H.3
Radivojac, P.4
-
7
-
-
27644543078
-
Comparison of label-free methods for quantifying human proteins by shotgun proteomics
-
Old, W. M., Meyer-Arendt, K., Aveline-Wolf, L., Pierce, K. G. et al., Comparison of label-free methods for quantifying human proteins by shotgun proteomics. Mol. Cell. Proteomics 2005, 4, 1487-1502.
-
(2005)
Mol. Cell. Proteomics
, vol.4
, pp. 1487-1502
-
-
Old, W.M.1
Meyer-Arendt, K.2
Aveline-Wolf, L.3
Pierce, K.G.4
-
9
-
-
77949795829
-
Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins
-
Zhang, Y., Wen, Z., Washburn, M. P., Florens, L., Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. Anal. Chem. 2010, 82, 2272-2281.
-
(2010)
Anal. Chem.
, vol.82
, pp. 2272-2281
-
-
Zhang, Y.1
Wen, Z.2
Washburn, M.P.3
Florens, L.4
-
10
-
-
77949686097
-
Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome
-
Weiss, M., Schrimpf, S., Hengartner, M. O., Lercher, M. J., von Mering, C., Shotgun proteomics data from multiple organisms reveals remarkable quantitative conservation of the eukaryotic core proteome. Proteomics 2010, 10, 1297-1306.
-
(2010)
Proteomics
, vol.10
, pp. 1297-1306
-
-
Weiss, M.1
Schrimpf, S.2
Hengartner, M.O.3
Lercher, M.J.4
von Mering, C.5
-
11
-
-
55249096894
-
Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast
-
de Godoy, L. M., Olsen, J. V., Cox, J., Nielsen, M. L. et al., Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast. Nature 2008, 455, 1251-1254.
-
(2008)
Nature
, vol.455
, pp. 1251-1254
-
-
de Godoy, L.M.1
Olsen, J.V.2
Cox, J.3
Nielsen, M.L.4
-
12
-
-
79953719716
-
More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS
-
Michalski, A., Cox, J., Mann, M., More than 100, 000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. J. Proteome Res. 2011, 10, 1785-1793.
-
(2011)
J. Proteome Res.
, vol.10
, pp. 1785-1793
-
-
Michalski, A.1
Cox, J.2
Mann, M.3
-
13
-
-
33847699732
-
Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas
-
King, N. L., Deutsch, E. W., Ranish, J. A., Nesvizhskii, A. I. et al., Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas. Genome Biol. 2006, 7, R106.
-
(2006)
Genome Biol.
, vol.7
-
-
King, N.L.1
Deutsch, E.W.2
Ranish, J.A.3
Nesvizhskii, A.I.4
-
14
-
-
33644876912
-
The PeptideAtlas project
-
Desiere, F., Deutsch, E. W., King, N. L., Nesvizhskii, A. I. et al., The PeptideAtlas project. Nucleic Acids Res. 2006, 34, D655-D658.
-
(2006)
Nucleic Acids Res.
, vol.34
-
-
Desiere, F.1
Deutsch, E.W.2
King, N.L.3
Nesvizhskii, A.I.4
-
15
-
-
68749094119
-
Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics
-
Picotti, P., Bodenmiller, B., Mueller, L. N., Domon, B., Aebersold, R., Full dynamic range proteome analysis of S. cerevisiae by targeted proteomics. Cell 2009, 138, 795-806.
-
(2009)
Cell
, vol.138
, pp. 795-806
-
-
Picotti, P.1
Bodenmiller, B.2
Mueller, L.N.3
Domon, B.4
Aebersold, R.5
-
16
-
-
67649511917
-
Isotope dilution strategies for absolute quantitative proteomics
-
Brun, V., Masselon, C., Garin, J., Dupuis, A., Isotope dilution strategies for absolute quantitative proteomics. J. Proteomics 2009, 72, 740-749.
-
(2009)
J. Proteomics
, vol.72
, pp. 740-749
-
-
Brun, V.1
Masselon, C.2
Garin, J.3
Dupuis, A.4
-
17
-
-
55849104840
-
Protein standard absolute quantification (PSAQ) for improved investigation of staphylococcal food poisoning outbreaks
-
Dupuis, A., Hennekinne, J. A., Garin, J., Brun, V., Protein standard absolute quantification (PSAQ) for improved investigation of staphylococcal food poisoning outbreaks. Proteomics 2008, 8, 4633-4636.
-
(2008)
Proteomics
, vol.8
, pp. 4633-4636
-
-
Dupuis, A.1
Hennekinne, J.A.2
Garin, J.3
Brun, V.4
-
18
-
-
44449162195
-
Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level
-
Hanke, S., Besir, H., Oesterhelt, D., Mann, M., Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level. J. Proteome Res. 2008, 7, 1118-1130.
-
(2008)
J. Proteome Res.
, vol.7
, pp. 1118-1130
-
-
Hanke, S.1
Besir, H.2
Oesterhelt, D.3
Mann, M.4
-
19
-
-
42649091860
-
Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics
-
Mirzaei, H., McBee, J. K., Watts, J., Aebersold, R., Comparative evaluation of current peptide production platforms used in absolute quantification in proteomics. Mol. Cell. Proteomics 2008, 7, 813-823.
-
(2008)
Mol. Cell. Proteomics
, vol.7
, pp. 813-823
-
-
Mirzaei, H.1
McBee, J.K.2
Watts, J.3
Aebersold, R.4
-
20
-
-
63049107227
-
Quantifying proteins by mass spectrometry: the selectivity of SRM is only part of the problem
-
Duncan, M. W., Yergey, A. L., Patterson, S. D., Quantifying proteins by mass spectrometry: the selectivity of SRM is only part of the problem. Proteomics 2009, 9, 1124-1127.
-
(2009)
Proteomics
, vol.9
, pp. 1124-1127
-
-
Duncan, M.W.1
Yergey, A.L.2
Patterson, S.D.3
-
21
-
-
13444260275
-
The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications
-
Kirkpatrick, D. S., Gerber, S. A., Gygi, S. P., The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications. Methods 2005, 35, 265-273.
-
(2005)
Methods
, vol.35
, pp. 265-273
-
-
Kirkpatrick, D.S.1
Gerber, S.A.2
Gygi, S.P.3
-
22
-
-
23144442824
-
Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides
-
Beynon, R. J., Doherty, M. K., Pratt, J. M., Gaskell, S. J., Multiplexed absolute quantification in proteomics using artificial QCAT proteins of concatenated signature peptides. Nat. Methods 2005, 2, 587-589.
-
(2005)
Nat. Methods
, vol.2
, pp. 587-589
-
-
Beynon, R.J.1
Doherty, M.K.2
Pratt, J.M.3
Gaskell, S.J.4
-
23
-
-
70449498714
-
Rigorous determination of the stoichiometry of protein phosphorylation using mass spectrometry
-
Johnson, H., Eyers, C. E., Eyers, P. A., Beynon, R. J., Gaskell, S. J., Rigorous determination of the stoichiometry of protein phosphorylation using mass spectrometry. J. Am. Soc. Mass Spectrom. 2009, 20, 2211-2220.
-
(2009)
J. Am. Soc. Mass Spectrom.
, vol.20
, pp. 2211-2220
-
-
Johnson, H.1
Eyers, C.E.2
Eyers, P.A.3
Beynon, R.J.4
Gaskell, S.J.5
-
24
-
-
45849140534
-
Protein quantification by selective isolation and fragmentation of isotopic pairs using FT-ICR MS
-
Johnson, H., Wong, S. C., Simpson, D. M., Beynon, R. J., Gaskell, S. J., Protein quantification by selective isolation and fragmentation of isotopic pairs using FT-ICR MS. J. Am. Soc. Mass Spectrom. 2008, 19, 973-977.
-
(2008)
J. Am. Soc. Mass Spectrom.
, vol.19
, pp. 973-977
-
-
Johnson, H.1
Wong, S.C.2
Simpson, D.M.3
Beynon, R.J.4
Gaskell, S.J.5
-
25
-
-
33847179916
-
Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes
-
Pratt, J. M., Simpson, D. M., Doherty, M. K., Rivers, J. et al., Multiplexed absolute quantification for proteomics using concatenated signature peptides encoded by QconCAT genes. Nat. Protoc. 2006, 1, 1029-1043.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1029-1043
-
-
Pratt, J.M.1
Simpson, D.M.2
Doherty, M.K.3
Rivers, J.4
-
26
-
-
34548427053
-
Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT
-
Rivers, J., Simpson, D. M., Robertson, D. H., Gaskell, S. J., Beynon, R. J., Absolute multiplexed quantitative analysis of protein expression during muscle development using QconCAT. Mol. Cell. Proteomics 2007, 6, 1416-1427.
-
(2007)
Mol. Cell. Proteomics
, vol.6
, pp. 1416-1427
-
-
Rivers, J.1
Simpson, D.M.2
Robertson, D.H.3
Gaskell, S.J.4
Beynon, R.J.5
-
27
-
-
79961202534
-
The importance of the digest: proteolysis and absolute quantification in proteomics
-
in press.
-
Brownridge, P. B., Beynon, R. J., The importance of the digest: proteolysis and absolute quantification in proteomics. Methods 2011, in press.
-
(2011)
Methods
-
-
Brownridge, P.B.1
Beynon, R.J.2
-
28
-
-
0036692065
-
Dynamics of protein turnover, a missing dimension in proteomics
-
Pratt, J. M., Petty, J., Riba-Garcia, I., Robertson, D. H. et al., Dynamics of protein turnover, a missing dimension in proteomics. Mol. Cell. Proteomics 2002, 1, 579-591.
-
(2002)
Mol. Cell. Proteomics
, vol.1
, pp. 579-591
-
-
Pratt, J.M.1
Petty, J.2
Riba-Garcia, I.3
Robertson, D.H.4
-
29
-
-
18344389894
-
Stable isotope labelling in vivo as an aid to protein identification in peptide mass fingerprinting
-
Pratt, J. M., Robertson, D. H., Gaskell, S. J., Riba-Garcia, I. et al., Stable isotope labelling in vivo as an aid to protein identification in peptide mass fingerprinting. Proteomics 2002, 2, 157-163.
-
(2002)
Proteomics
, vol.2
, pp. 157-163
-
-
Pratt, J.M.1
Robertson, D.H.2
Gaskell, S.J.3
Riba-Garcia, I.4
-
30
-
-
0142184341
-
Global analysis of protein localization in budding yeast
-
Huh, W. K., Falvo, J. V., Gerke, L. C., Carroll, A. S. et al., Global analysis of protein localization in budding yeast. Nature 2003, 425, 686-691.
-
(2003)
Nature
, vol.425
, pp. 686-691
-
-
Huh, W.K.1
Falvo, J.V.2
Gerke, L.C.3
Carroll, A.S.4
-
31
-
-
0031812617
-
Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures
-
Hubbard, S. J., Beynon, R. J., Thornton, J. M., Assessment of conformational parameters as predictors of limited proteolytic sites in native protein structures. Protein Eng. 1998, 11, 349-359.
-
(1998)
Protein Eng.
, vol.11
, pp. 349-359
-
-
Hubbard, S.J.1
Beynon, R.J.2
Thornton, J.M.3
-
32
-
-
0014211618
-
On the size of the active site in proteases. I. Papain
-
Schechter, I., Berger, A., On the size of the active site in proteases. I. Papain. Biochem. Biophys. Res. Commun. 1967, 27, 157-162.
-
(1967)
Biochem. Biophys. Res. Commun.
, vol.27
, pp. 157-162
-
-
Schechter, I.1
Berger, A.2
-
33
-
-
33846632267
-
Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics
-
Siepen, J. A., Keevil, E. J., Knight, D., Hubbard, S. J., Prediction of missed cleavage sites in tryptic peptides aids protein identification in proteomics. J. Proteome Res. 2007, 6, 399-408.
-
(2007)
J. Proteome Res.
, vol.6
, pp. 399-408
-
-
Siepen, J.A.1
Keevil, E.J.2
Knight, D.3
Hubbard, S.J.4
-
34
-
-
43049127826
-
PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows
-
Deutsch, E. W., Lam, H., Aebersold, R., PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows. EMBO Rep. 2008, 9, 429-434.
-
(2008)
EMBO Rep.
, vol.9
, pp. 429-434
-
-
Deutsch, E.W.1
Lam, H.2
Aebersold, R.3
-
35
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: a tutorial
-
Lange, V., Picotti, P., Domon, B., Aebersold, R., Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol. 2008, 4, 222.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, V.1
Picotti, P.2
Domon, B.3
Aebersold, R.4
-
36
-
-
41549117597
-
A quantitative analysis software tool for mass spectrometry-based proteomics
-
Park, S. K., Venable, J. D., Xu, T., Yates, J. R. r., A quantitative analysis software tool for mass spectrometry-based proteomics. Nat. Methods 2008, 5, 319-322.
-
(2008)
Nat. Methods
, vol.5
, pp. 319-322
-
-
Park, S.K.1
Venable, J.D.2
Xu, T.3
Yates, J.R.r.4
-
37
-
-
34548431062
-
Capture and analysis of quantitative proteomic data
-
Lau, K. W., Jones, A. R., Swainston, N., Siepen, J. A., Hubbard, S. J., Capture and analysis of quantitative proteomic data. Proteomics 2007, 7, 2787-2799.
-
(2007)
Proteomics
, vol.7
, pp. 2787-2799
-
-
Lau, K.W.1
Jones, A.R.2
Swainston, N.3
Siepen, J.A.4
Hubbard, S.J.5
|