-
1
-
-
67849122320
-
MEME SUITE: tools for motif discovery and searching
-
Bailey T.L., Boden M., Buske F.A., Frith M., Grant C.E., Clementi L., Ren J., Li W.W., Noble W.S. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 2009, 37(Web Server issue):W202-W208.
-
(2009)
Nucleic Acids Res.
, vol.37
, Issue.Web Server issue
, pp. W202-W208
-
-
Bailey, T.L.1
Boden, M.2
Buske, F.A.3
Frith, M.4
Grant, C.E.5
Clementi, L.6
Ren, J.7
Li, W.W.8
Noble, W.S.9
-
2
-
-
84864065342
-
Protective coupling of mitochondrial function and protein synthesis via the eIF2α kinase GCN-2
-
Baker B.M., Nargund A.M., Sun T., Haynes C.M. Protective coupling of mitochondrial function and protein synthesis via the eIF2α kinase GCN-2. PLoS Genet. 2012, 8:e1002760.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002760
-
-
Baker, B.M.1
Nargund, A.M.2
Sun, T.3
Haynes, C.M.4
-
3
-
-
84878147112
-
Accessorizing the human mitochondrial transcription machinery
-
Bestwick M.L., Shadel G.S. Accessorizing the human mitochondrial transcription machinery. Trends Biochem. Sci. 2013, 38:283-291.
-
(2013)
Trends Biochem. Sci.
, vol.38
, pp. 283-291
-
-
Bestwick, M.L.1
Shadel, G.S.2
-
4
-
-
0038817360
-
Assessing metabolic activity in aging Caenorhabditis elegans: concepts and controversies
-
discussion 102-103
-
Braeckman B.P., Houthoofd K., Vanfleteren J.R. Assessing metabolic activity in aging Caenorhabditis elegans: concepts and controversies. Aging Cell 2002, 1:82-88. discussion 102-103.
-
(2002)
Aging Cell
, vol.1
, pp. 82-88
-
-
Braeckman, B.P.1
Houthoofd, K.2
Vanfleteren, J.R.3
-
5
-
-
64549151315
-
Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development
-
Bratic I., Hench J., Henriksson J., Antebi A., Bürglin T.R., Trifunovic A. Mitochondrial DNA level, but not active replicase, is essential for Caenorhabditis elegans development. Nucleic Acids Res. 2009, 37:1817-1828.
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. 1817-1828
-
-
Bratic, I.1
Hench, J.2
Henriksson, J.3
Antebi, A.4
Bürglin, T.R.5
Trifunovic, A.6
-
6
-
-
77955280004
-
Caenorhabditis elegans as a model system for mtDNA replication defects
-
Bratic I., Hench J., Trifunovic A. Caenorhabditis elegans as a model system for mtDNA replication defects. Methods 2010, 51:437-443.
-
(2010)
Methods
, vol.51
, pp. 437-443
-
-
Bratic, I.1
Hench, J.2
Trifunovic, A.3
-
7
-
-
77951956867
-
Assigning roles to DNA regulatory motifs using comparative genomics
-
Buske F.A., Bodén M., Bauer D.C., Bailey T.L. Assigning roles to DNA regulatory motifs using comparative genomics. Bioinformatics 2010, 26:860-866.
-
(2010)
Bioinformatics
, vol.26
, pp. 860-866
-
-
Buske, F.A.1
Bodén, M.2
Bauer, D.C.3
Bailey, T.L.4
-
8
-
-
9644267549
-
Binding of MCF-7 cell mitochondrial proteins and recombinant human estrogen receptors alpha and beta to human mitochondrial DNA estrogen response elements
-
Chen J.Q., Eshete M., Alworth W.L., Yager J.D. Binding of MCF-7 cell mitochondrial proteins and recombinant human estrogen receptors alpha and beta to human mitochondrial DNA estrogen response elements. J.Cell. Biochem. 2004, 93:358-373.
-
(2004)
J.Cell. Biochem.
, vol.93
, pp. 358-373
-
-
Chen, J.Q.1
Eshete, M.2
Alworth, W.L.3
Yager, J.D.4
-
9
-
-
0038005018
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery
-
Dennis G., Sherman B.T., Hosack D.A., Yang J., Gao W., Lane H.C., Lempicki R.A. DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol. 2003, 4:3.
-
(2003)
Genome Biol.
, vol.4
, pp. 3
-
-
Dennis, G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
11
-
-
84863741781
-
Assembly factors of human mitochondrial respiratory chain complexes: physiology and pathophysiology
-
Ghezzi D., Zeviani M. Assembly factors of human mitochondrial respiratory chain complexes: physiology and pathophysiology. Adv. Exp. Med. Biol. 2012, 748:65-106.
-
(2012)
Adv. Exp. Med. Biol.
, vol.748
, pp. 65-106
-
-
Ghezzi, D.1
Zeviani, M.2
-
12
-
-
76849100919
-
The matrix peptide exporter HAF-1 signals a mitochondrial UPR by activating the transcription factor ZC376.7 in C. elegans
-
Haynes C.M., Yang Y., Blais S.P., Neubert T.A., Ron D. The matrix peptide exporter HAF-1 signals a mitochondrial UPR by activating the transcription factor ZC376.7 in C. elegans. Mol. Cell 2010, 37:529-540.
-
(2010)
Mol. Cell
, vol.37
, pp. 529-540
-
-
Haynes, C.M.1
Yang, Y.2
Blais, S.P.3
Neubert, T.A.4
Ron, D.5
-
13
-
-
84879602902
-
Evaluating and responding to mitochondrial dysfunction: the mitochondrial unfolded-protein response and beyond
-
Haynes C.M., Fiorese C.J., Lin Y.F. Evaluating and responding to mitochondrial dysfunction: the mitochondrial unfolded-protein response and beyond. Trends Cell Biol. 2013, 23:311-318.
-
(2013)
Trends Cell Biol.
, vol.23
, pp. 311-318
-
-
Haynes, C.M.1
Fiorese, C.J.2
Lin, Y.F.3
-
14
-
-
84878138385
-
Mitonuclear protein imbalance as a conserved longevity mechanism
-
Houtkooper R.H., Mouchiroud L., Ryu D., Moullan N., Katsyuba E., Knott G., Williams R.W., Auwerx J. Mitonuclear protein imbalance as a conserved longevity mechanism. Nature 2013, 497:451-457.
-
(2013)
Nature
, vol.497
, pp. 451-457
-
-
Houtkooper, R.H.1
Mouchiroud, L.2
Ryu, D.3
Moullan, N.4
Katsyuba, E.5
Knott, G.6
Williams, R.W.7
Auwerx, J.8
-
15
-
-
57349115353
-
Estrogenic control of mitochondrial function and biogenesis
-
Klinge C.M. Estrogenic control of mitochondrial function and biogenesis. J.Cell. Biochem. 2008, 105:1342-1351.
-
(2008)
J.Cell. Biochem.
, vol.105
, pp. 1342-1351
-
-
Klinge, C.M.1
-
16
-
-
0033639076
-
Membrane protein degradation by AAA proteases in mitochondria: extraction of substrates from either membrane surface
-
Leonhard K., Guiard B., Pellecchia G., Tzagoloff A., Neupert W., Langer T. Membrane protein degradation by AAA proteases in mitochondria: extraction of substrates from either membrane surface. Mol. Cell 2000, 5:629-638.
-
(2000)
Mol. Cell
, vol.5
, pp. 629-638
-
-
Leonhard, K.1
Guiard, B.2
Pellecchia, G.3
Tzagoloff, A.4
Neupert, W.5
Langer, T.6
-
17
-
-
84922248981
-
Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors
-
Marinov G.K., Wang Y.E., Chan D., Wold B.J. Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors. PloS One 2014, 9:e84713.
-
(2014)
PloS One
, vol.9
, pp. e84713
-
-
Marinov, G.K.1
Wang, Y.E.2
Chan, D.3
Wold, B.J.4
-
18
-
-
78650483039
-
Inventory control: cytochrome c oxidase assembly regulates mitochondrial translation
-
Mick D.U., Fox T.D., Rehling P. Inventory control: cytochrome c oxidase assembly regulates mitochondrial translation. Nat. Rev. Mol. Cell Biol. 2011, 12:14-20.
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 14-20
-
-
Mick, D.U.1
Fox, T.D.2
Rehling, P.3
-
19
-
-
84860697620
-
Understanding mitochondrial complex I assembly in health and disease
-
Mimaki M., Wang X., McKenzie M., Thorburn D.R., Ryan M.T. Understanding mitochondrial complex I assembly in health and disease. Biochim. Biophys. Acta 2012, 1817:851-862.
-
(2012)
Biochim. Biophys. Acta
, vol.1817
, pp. 851-862
-
-
Mimaki, M.1
Wang, X.2
McKenzie, M.3
Thorburn, D.R.4
Ryan, M.T.5
-
20
-
-
84864744900
-
Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation
-
Nargund A.M., Pellegrino M.W., Fiorese C.J., Baker B.M., Haynes C.M. Mitochondrial import efficiency of ATFS-1 regulates mitochondrial UPR activation. Science 2012, 337:587-590.
-
(2012)
Science
, vol.337
, pp. 587-590
-
-
Nargund, A.M.1
Pellegrino, M.W.2
Fiorese, C.J.3
Baker, B.M.4
Haynes, C.M.5
-
21
-
-
26844484821
-
The m-AAA protease defective in hereditary spastic paraplegia controls ribosome assembly in mitochondria
-
Nolden M., Ehses S., Koppen M., Bernacchia A., Rugarli E.I., Langer T. The m-AAA protease defective in hereditary spastic paraplegia controls ribosome assembly in mitochondria. Cell 2005, 123:277-289.
-
(2005)
Cell
, vol.123
, pp. 277-289
-
-
Nolden, M.1
Ehses, S.2
Koppen, M.3
Bernacchia, A.4
Rugarli, E.I.5
Langer, T.6
-
22
-
-
70350625466
-
Condition-adapted stress and longevity gene regulation by Caenorhabditis elegans SKN-1/Nrf
-
Oliveira R.P., Porter Abate J., Dilks K., Landis J., Ashraf J., Murphy C.T., Blackwell T.K. Condition-adapted stress and longevity gene regulation by Caenorhabditis elegans SKN-1/Nrf. Aging Cell 2009, 8:524-541.
-
(2009)
Aging Cell
, vol.8
, pp. 524-541
-
-
Oliveira, R.P.1
Porter Abate, J.2
Dilks, K.3
Landis, J.4
Ashraf, J.5
Murphy, C.T.6
Blackwell, T.K.7
-
23
-
-
46349103594
-
A mitochondrial protein compendium elucidates complex I disease biology
-
Pagliarini D.J., Calvo S.E., Chang B., Sheth S.A., Vafai S.B., Ong S.E., Walford G.A., Sugiana C., Boneh A., Chen W.K., et al. A mitochondrial protein compendium elucidates complex I disease biology. Cell 2008, 134:112-123.
-
(2008)
Cell
, vol.134
, pp. 112-123
-
-
Pagliarini, D.J.1
Calvo, S.E.2
Chang, B.3
Sheth, S.A.4
Vafai, S.B.5
Ong, S.E.6
Walford, G.A.7
Sugiana, C.8
Boneh, A.9
Chen, W.K.10
-
24
-
-
79959450877
-
Mitochondrial DNA mutations in disease and aging
-
Park C.B., Larsson N.G. Mitochondrial DNA mutations in disease and aging. J.Cell Biol. 2011, 193:809-818.
-
(2011)
J.Cell Biol.
, vol.193
, pp. 809-818
-
-
Park, C.B.1
Larsson, N.G.2
-
25
-
-
84921774753
-
Mitochondrial UPR-regulated innate immunity provides resistance to pathogen infection
-
Pellegrino M.W., Nargund A.M., Kirienko N.V., Gillis R., Fiorese C.J., Haynes C.M. Mitochondrial UPR-regulated innate immunity provides resistance to pathogen infection. Nature 2014, 516:414-417.
-
(2014)
Nature
, vol.516
, pp. 414-417
-
-
Pellegrino, M.W.1
Nargund, A.M.2
Kirienko, N.V.3
Gillis, R.4
Fiorese, C.J.5
Haynes, C.M.6
-
26
-
-
84875484178
-
Succinate dehydrogenase upregulation destabilize complex I and limits the lifespan of gas-1 mutant
-
Pujol C., Bratic-Hench I., Sumakovic M., Hench J., Mourier A., Baumann L., Pavlenko V., Trifunovic A. Succinate dehydrogenase upregulation destabilize complex I and limits the lifespan of gas-1 mutant. PLoS ONE 2013, 8:e59493.
-
(2013)
PLoS ONE
, vol.8
, pp. e59493
-
-
Pujol, C.1
Bratic-Hench, I.2
Sumakovic, M.3
Hench, J.4
Mourier, A.5
Baumann, L.6
Pavlenko, V.7
Trifunovic, A.8
-
27
-
-
77956308057
-
The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny
-
Rechtsteiner A., Ercan S., Takasaki T., Phippen T.M., Egelhofer T.A., Wang W., Kimura H., Lieb J.D., Strome S. The histone H3K36 methyltransferase MES-4 acts epigenetically to transmit the memory of germline gene expression to progeny. PLoS Genet. 2010, 6:e1001091.
-
(2010)
PLoS Genet.
, vol.6
, pp. e1001091
-
-
Rechtsteiner, A.1
Ercan, S.2
Takasaki, T.3
Phippen, T.M.4
Egelhofer, T.A.5
Wang, W.6
Kimura, H.7
Lieb, J.D.8
Strome, S.9
-
28
-
-
84877594881
-
Networks of bZIP protein-protein interactions diversified over a billion years of evolution
-
Reinke A.W., Baek J., Ashenberg O., Keating A.E. Networks of bZIP protein-protein interactions diversified over a billion years of evolution. Science 2013, 340:730-734.
-
(2013)
Science
, vol.340
, pp. 730-734
-
-
Reinke, A.W.1
Baek, J.2
Ashenberg, O.3
Keating, A.E.4
-
29
-
-
84858791998
-
Mitochondrial quality control: a matter of life and death for neurons
-
Rugarli E.I., Langer T. Mitochondrial quality control: a matter of life and death for neurons. EMBO J. 2012, 31:1336-1349.
-
(2012)
EMBO J.
, vol.31
, pp. 1336-1349
-
-
Rugarli, E.I.1
Langer, T.2
-
30
-
-
0035173032
-
Electrophoretic mobility shift scanning using an automated infrared DNA sequencer
-
1060, 1062
-
Sano M., Ohyama A., Takase K., Yamamoto M., Machida M. Electrophoretic mobility shift scanning using an automated infrared DNA sequencer. Biotechniques 2001, 31:1056-1058. 1060, 1062.
-
(2001)
Biotechniques
, vol.31
, pp. 1056-1058
-
-
Sano, M.1
Ohyama, A.2
Takase, K.3
Yamamoto, M.4
Machida, M.5
-
32
-
-
2342592545
-
The estrogen-related receptor alpha (ERRalpha) functions in PPARgamma coactivator 1alpha (PGC-1alpha)-induced mitochondrial biogenesis
-
Schreiber S.N., Emter R., Hock M.B., Knutti D., Cardenas J., Podvinec M., Oakeley E.J., Kralli A. The estrogen-related receptor alpha (ERRalpha) functions in PPARgamma coactivator 1alpha (PGC-1alpha)-induced mitochondrial biogenesis. Proc. Natl. Acad. Sci. USA 2004, 101:6472-6477.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 6472-6477
-
-
Schreiber, S.N.1
Emter, R.2
Hock, M.B.3
Knutti, D.4
Cardenas, J.5
Podvinec, M.6
Oakeley, E.J.7
Kralli, A.8
-
33
-
-
84864315728
-
Multi-tasking: nuclear transcription factors with novel roles in the mitochondria
-
Szczepanek K., Lesnefsky E.J., Larner A.C. Multi-tasking: nuclear transcription factors with novel roles in the mitochondria. Trends Cell Biol. 2012, 22:429-437.
-
(2012)
Trends Cell Biol.
, vol.22
, pp. 429-437
-
-
Szczepanek, K.1
Lesnefsky, E.J.2
Larner, A.C.3
-
34
-
-
84869051280
-
Mitochondrial disorders as windows into an ancient organelle
-
Vafai S.B., Mootha V.K. Mitochondrial disorders as windows into an ancient organelle. Nature 2012, 491:374-383.
-
(2012)
Nature
, vol.491
, pp. 374-383
-
-
Vafai, S.B.1
Mootha, V.K.2
-
35
-
-
77957240692
-
Blue native electrophoresis to study mitochondrial complex I in C. elegans
-
van den Ecker D., van den Brand M.A., Bossinger O., Mayatepek E., Nijtmans L.G., Distelmaier F. Blue native electrophoresis to study mitochondrial complex I in C. elegans. Anal. Biochem. 2010, 407:287-289.
-
(2010)
Anal. Biochem.
, vol.407
, pp. 287-289
-
-
van den Ecker, D.1
van den Brand, M.A.2
Bossinger, O.3
Mayatepek, E.4
Nijtmans, L.G.5
Distelmaier, F.6
-
36
-
-
0033538473
-
Mechanisms controlling mitochondrial biogenesis and respiration through the thermogenic coactivator PGC-1
-
Wu Z., Puigserver P., Andersson U., Zhang C., Adelmant G., Mootha V., Troy A., Cinti S., Lowell B., Scarpulla R.C., Spiegelman B.M. Mechanisms controlling mitochondrial biogenesis and respiration through the thermogenic coactivator PGC-1. Cell 1999, 98:115-124.
-
(1999)
Cell
, vol.98
, pp. 115-124
-
-
Wu, Z.1
Puigserver, P.2
Andersson, U.3
Zhang, C.4
Adelmant, G.5
Mootha, V.6
Troy, A.7
Cinti, S.8
Lowell, B.9
Scarpulla, R.C.10
Spiegelman, B.M.11
-
37
-
-
4944234936
-
Compartment-specific perturbation of protein handling activates genes encoding mitochondrial chaperones
-
Yoneda T., Benedetti C., Urano F., Clark S.G., Harding H.P., Ron D. Compartment-specific perturbation of protein handling activates genes encoding mitochondrial chaperones. J.Cell Sci. 2004, 117:4055-4066.
-
(2004)
J.Cell Sci.
, vol.117
, pp. 4055-4066
-
-
Yoneda, T.1
Benedetti, C.2
Urano, F.3
Clark, S.G.4
Harding, H.P.5
Ron, D.6
|