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Volumn 9, Issue 1, 2014, Pages

Evidence for site-specific occupancy of the mitochondrial genome by nuclear transcription factors

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA; TRANSCRIPTION FACTOR;

EID: 84922248981     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0084713     Document Type: Article
Times cited : (28)

References (83)
  • 1
    • 27144488229 scopus 로고    scopus 로고
    • Novel role of p53 in maintaining mitochondrial genetic stability through interaction with DNA Pol γ
    • DOI 10.1038/sj.emboj.7600819, PII 7600819
    • Achanta G, Sasaki R, Feng L, Carew JS, Lu W, et al. (2005) Novel role of p53 in maintaining mitochondrial genetic stability through interaction with DNA Polγ. EMBO Journal 24(19):3482-92. (Pubitemid 41486785)
    • (2005) EMBO Journal , vol.24 , Issue.19 , pp. 3482-3492
    • Achanta, G.1    Sasaki, R.2    Feng, L.3    Carew, J.S.4    Lu, W.5    Pelicano, H.6    Keating, M.J.7    Huang, P.8
  • 2
    • 84864011866 scopus 로고    scopus 로고
    • The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence
    • Aksoy O, Chicas A, Zeng T, Zhao Z, McCurrach M, et al. (2012) The atypical E2F family member E2F7 couples the p53 and RB pathways during cellular senescence. Genes Dev 26(14):1546-57.
    • (2012) Genes Dev , vol.26 , Issue.14 , pp. 1546-1557
    • Aksoy, O.1    Chicas, A.2    Zeng, T.3    Zhao, Z.4    McCurrach, M.5
  • 3
    • 0019423856 scopus 로고
    • Sequence and organization of the human mitochondrial genome
    • DOI 10.1038/290457a0
    • Anderson S, Bankier AT, Barrell BG, de Bruijn MH, Coulson AR, et al. (1981) Sequence and organization of the human mitochondrial genome. Nature 290(5806):457-465. (Pubitemid 11159074)
    • (1981) Nature , vol.290 , Issue.5806 , pp. 457-465
    • Anderson, S.1    Bankier, A.T.2    Barrell, B.G.3
  • 5
    • 0019837699 scopus 로고
    • Sequence and gene organization of mouse mitochondrial DNA
    • Bibb MJ, Van Etten RA, Wright CT, Walberg MW, Clayton DA (1981) Sequence and gene organization of mouse mitochondrial DNA. Cell 26(2 Pt 2):167-180. (Pubitemid 12244496)
    • (1981) Cell , vol.26 , Issue.2 , pp. 167-180
    • Bibb, M.J.1    Van Etten, R.A.2    Wright, C.T.3
  • 6
    • 78649324875 scopus 로고    scopus 로고
    • Inhibition of permeability transition pore opening by mitochondrial STAT3 and its role in myocardial ischemia/reperfusion
    • Boengler K, Hilfiker-Kleiner D, Heusch G, Schulz R (2010) Inhibition of permeability transition pore opening by mitochondrial STAT3 and its role in myocardial ischemia/reperfusion. Basic Res Cardiol 105(6):771-785.
    • (2010) Basic Res Cardiol , vol.105 , Issue.6 , pp. 771-785
    • Boengler, K.1    Hilfiker-Kleiner, D.2    Heusch, G.3    Schulz, R.4
  • 7
    • 0016327931 scopus 로고
    • The number of mitochondrial deoxyribonucleic acid genomes in mouse L and human HeLa cells. Quantitative isolation of mitochondrial deoxyribonucleic acid
    • Bogenhagen D, Clayton DA (1974) The number of mitochondrial deoxyribonucleic acid genomes in mouse L and human HeLa cells. Quantitative isolation of mitochondrial deoxyribonucleic acid. J Biol Chem 249(24):7991-5.
    • (1974) J Biol Chem , vol.249 , Issue.24 , pp. 7991-7995
    • Bogenhagen, D.1    Clayton, D.A.2
  • 9
    • 0018954657 scopus 로고
    • Mapping of nascent light and heavy strand transcripts on the physical map of HeLa cell mitochondrial DNA
    • Cantatore P, Attardi G (1980) Mapping of nascent light and heavy strand transcripts on the physical map of HeLa cell mitochondrial DNA. Nucleic Acids Res 8(12):2605-2625. (Pubitemid 10023570)
    • (1980) Nucleic Acids Research , vol.8 , Issue.12 , pp. 2605-2625
    • Cantatore, P.1    Attardi, G.2
  • 12
    • 77952578865 scopus 로고    scopus 로고
    • Viral apoptosis is induced by IRF-3-mediated activation of Bax
    • Chattopadhyay S, Marques JT, Yamashita M, Peters KL, Smith K, et al. (2010) Viral apoptosis is induced by IRF-3-mediated activation of Bax. EMBO J 29(10):1762-1773.
    • (2010) EMBO J , vol.29 , Issue.10 , pp. 1762-1773
    • Chattopadhyay, S.1    Marques, J.T.2    Yamashita, M.3    Peters, K.L.4    Smith, K.5
  • 14
    • 78649451048 scopus 로고    scopus 로고
    • Mitochondrial translocation of signal transducer and activator of transcription 5 (STAT5) in leukemic T cells and cytokine-stimulated cells
    • Chueh FY, Leong KF, Yu CL (2010) Mitochondrial translocation of signal transducer and activator of transcription 5 (STAT5) in leukemic T cells and cytokine-stimulated cells. Biochem Biophys Res Commun 402(4):778-783.
    • (2010) Biochem Biophys Res Commun , vol.402 , Issue.4 , pp. 778-783
    • Chueh, F.Y.1    Leong, K.F.2    Yu, C.L.3
  • 15
    • 0029915525 scopus 로고    scopus 로고
    • Computational method to predict mitochondrially imported proteins and their targeting sequences
    • Claros MG, Vincens P (1996) Computational method to predict mitochondrially imported proteins and their targeting sequences. Eur J Biochem 241(3):779-786. (Pubitemid 26379380)
    • (1996) European Journal of Biochemistry , vol.241 , Issue.3 , pp. 779-786
    • Claros, M.G.1    Vincens, P.2
  • 17
    • 68749094302 scopus 로고    scopus 로고
    • cAMP response element-binding protein (CREB) is imported into mitochondria and promotes protein synthesis
    • De Rasmo D, Signorile A, Roca E, Papa S (2009) cAMP response element-binding protein (CREB) is imported into mitochondria and promotes protein synthesis. FEBS J 276(16):4325-33.
    • (2009) FEBS J , vol.276 , Issue.16 , pp. 4325-4333
    • De Rasmo, D.1    Signorile, A.2    Roca, E.3    Papa, S.4
  • 19
    • 0028841899 scopus 로고
    • The mitochondrion as a primary site of action of glucocorticoids: The interaction of the glucocorticoid receptor with mitochondrial DNA sequences showing partial similarity to the nuclear glucocorticoid responsive elements
    • Demonacos C, Djordjevic-Markovic R, Tsawdaroglou N, Sekeris CE (1995) The mitochondrion as a primary site of action of glucocorticoids: the interaction of the glucocorticoid receptor with mitochondrial DNA sequences showing partial similarity to the nuclear glucocorticoid responsive elements. J Steroid Biochem Mol Biol 55(1):43-55.
    • (1995) J Steroid Biochem Mol Biol , vol.55 , Issue.1 , pp. 43-55
    • Demonacos, C.1    Djordjevic-Markovic, R.2    Tsawdaroglou, N.3    Sekeris, C.E.4
  • 20
    • 0001603853 scopus 로고
    • Hybridization between the nuclear and kinetoplast DNA's of Leishmania enriettii and between nuclear and mitochondrial DNA's of mouse liver
    • du Buy H, Riley F (1967) Hybridization between the nuclear and kinetoplast DNA's of Leishmania enriettii and between nuclear and mitochondrial DNA's of mouse liver. Proc Natl Acad Sci U S A 57(3):790-797.
    • (1967) Proc Natl Acad Sci U S a , vol.57 , Issue.3 , pp. 790-797
    • Du Buy, H.1    Riley, F.2
  • 21
    • 34248531753 scopus 로고    scopus 로고
    • Locating proteins in the cell using TargetP, SignalP and related tools
    • DOI 10.1038/nprot.2007.131, PII NPROT.2007.131
    • Emanuelsson O, Brunak S, von Heijne G, Nielsen H (2007) Locating proteins in the cell using TargetP, SignalP and related tools. Nat Protoc 2(4):953-971. (Pubitemid 46745592)
    • (2007) Nature Protocols , vol.2 , Issue.4 , pp. 953-971
    • Emanuelsson, O.1    Brunak, S.2    Von, H.G.3    Nielsen, H.4
  • 22
    • 79955550445 scopus 로고    scopus 로고
    • A user's guide to the encyclopedia of DNA elements (ENCODE)
    • ENCODE Project Consortium doi: 10.1371/journal.pbio.1001046
    • ENCODE Project Consortium (2011) A user's guide to the encyclopedia of DNA elements (ENCODE). PLoS Biol 9(4):e1001046. doi: 10.1371/journal.pbio. 1001046
    • (2011) PLoS Biol , vol.9 , Issue.4
  • 23
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • ENCODE Project Consortium
    • ENCODE Project Consortium (2012) An integrated encyclopedia of DNA elements in the human genome. Nature 489(7414):57-74.
    • (2012) Nature , vol.489 , Issue.7414 , pp. 57-74
  • 24
    • 0345493790 scopus 로고    scopus 로고
    • Autonomous regulation in mammalian mitochondrial DNA transcription
    • DOI 10.1515/BC.1999.094
    • Enríquez JA, Fernández-Sílva P, Montoya J (1999) Autonomous regulation in mammalian mitochondrial DNA transcription. Biol Chem 380(7-8):737-747. (Pubitemid 29412731)
    • (1999) Biological Chemistry , vol.380 , Issue.7-8 , pp. 737-747
    • Enriquez, J.A.1    Fernandez-Silva, P.2    Montoya, J.3
  • 26
    • 0036648997 scopus 로고    scopus 로고
    • Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA
    • Falkenberg M, Gaspari M, Rantanen A, Trifunovic A, Larsson NG, et al. (2002) Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA. Nat Genet 31(3):289-294.
    • (2002) Nat Genet , vol.31 , Issue.3 , pp. 289-294
    • Falkenberg, M.1    Gaspari, M.2    Rantanen, A.3    Trifunovic, A.4    Larsson, N.G.5
  • 27
    • 0022212873 scopus 로고
    • A transcription factor required for promoter recognition by human mitochondrial RNA polymerase. Accurate initiation at the heavy- and light-strand promoters dissected and reconstituted in vitro
    • Fisher RP, Clayton DA (1985) A transcription factor required for promoter recognition by human mitochondrial RNA polymerase. Accurate initiation at the heavy- and light-strand promoters dissected and reconstituted in vitro. J Biol Chem 260(20):11330-11338. (Pubitemid 16253301)
    • (1985) Journal of Biological Chemistry , vol.260 , Issue.20 , pp. 11330-11338
    • Fisher, R.P.1    Clayton, D.A.2
  • 28
    • 0023684801 scopus 로고
    • Purification and characterization of human mitochondrial transcription factor 1
    • Fisher RP, Clayton DA (1988) Purification and characterization of human mitochondrial transcription factor 1. Mol Cell Biol 8(8):3496-3509.
    • (1988) Mol Cell Biol , vol.8 , Issue.8 , pp. 3496-3509
    • Fisher, R.P.1    Clayton, D.A.2
  • 29
    • 10644229290 scopus 로고    scopus 로고
    • The mitochondrial RNA polymerase contributes critically to promoter specificity in mammalian cells
    • DOI 10.1038/sj.emboj.7600465
    • Gaspari M, Falkenberg M, Larsson NG, Gustafsson CM (2004) The mitochondrial RNA polymerase contributes critically to promoter specificity in mammalian cells. EMBO J 23(23):4606-4614. (Pubitemid 39657860)
    • (2004) EMBO Journal , vol.23 , Issue.23 , pp. 4606-4614
    • Gaspari, M.1    Falkenberg, M.2    Larsson, N.-G.3    Gustafsson, C.M.4
  • 30
    • 78650410139 scopus 로고    scopus 로고
    • Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project
    • Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, et al. (2010) Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project. Science 330(6012):1775-1787.
    • (2010) Science , vol.330 , Issue.6012 , pp. 1775-1787
    • Gerstein, M.B.1    Lu, Z.J.2    Van Nostrand, E.L.3    Cheng, C.4    Arshinoff, B.I.5
  • 31
    • 84868324642 scopus 로고    scopus 로고
    • Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner
    • Gertz J, Reddy TE, Varley KE, Garabedian MJ, Myers RM (2012) Genistein and bisphenol A exposure cause estrogen receptor 1 to bind thousands of sites in a cell type-specific manner. Genome Res 22(11):2153-62.
    • (2012) Genome Res , vol.22 , Issue.11 , pp. 2153-2162
    • Gertz, J.1    Reddy, T.E.2    Varley, K.E.3    Garabedian, M.J.4    Myers, R.M.5
  • 32
    • 67649988989 scopus 로고    scopus 로고
    • Mitochondrial STAT3 supports Ras-dependent oncogenic transformation
    • Gough DJ, Corlett A, Schlessinger K, Wegrzyn J, Larner AC, et al. (2009) Mitochondrial STAT3 supports Ras-dependent oncogenic transformation. Science 324(5935):1713-1716.
    • (2009) Science , vol.324 , Issue.5935 , pp. 1713-1716
    • Gough, D.J.1    Corlett, A.2    Schlessinger, K.3    Wegrzyn, J.4    Larner, A.C.5
  • 33
    • 77649210966 scopus 로고    scopus 로고
    • Molecular poltergeists: Mitochondrial DNA copies (numts) in sequenced nuclear genomes
    • doi: 10.1371/journal.pgen.1000834
    • Hazkani-Covo E, Zeller RM, Martin W (2010) Molecular poltergeists: mitochondrial DNA copies (numts) in sequenced nuclear genomes. PLoS Genet 6(2):e1000834. doi: 10.1371/journal.pgen.1000834.
    • (2010) PLoS Genet , vol.6 , Issue.2
    • Hazkani-Covo, E.1    Zeller, R.M.2    Martin, W.3
  • 34
    • 9644277218 scopus 로고    scopus 로고
    • Identification of a putative p53 binding sequence within the human mitochondrial genome
    • DOI 10.1016/j.febslet.2004.10.099, PII S0014579304013730
    • Heyne K, Mannebach S, Wuertz E, Knaup KX, Mahyar-Roemer M, et al. (2004) Identification of a putative p53 binding sequence within the human mitochondrial genome. FEBS Lett 578(1-2):198-202. (Pubitemid 39576125)
    • (2004) FEBS Letters , vol.578 , Issue.1-2 , pp. 198-202
    • Heyne, K.1    Mannebach, S.2    Wuertz, E.3    Knaup, K.X.4    Mahyar-Roemer, M.5    Roemer, K.6
  • 35
    • 34250159524 scopus 로고    scopus 로고
    • Genome-wide mapping of in vivo protein-DNA interactions
    • DOI 10.1126/science.1141319
    • Johnson DS, Mortazavi A, Myers RM, Wold B (2007) Genome-wide mapping of in vivo protein-DNA interactions. Science 316(5830):1497-502. (Pubitemid 46906620)
    • (2007) Science , vol.316 , Issue.5830 , pp. 1497-1502
    • Johnson, D.S.1    Mortazavi, A.2    Myers, R.M.3    Wold, B.4
  • 36
    • 80051677812 scopus 로고    scopus 로고
    • p53-dependent regulation of mitochondrial energy production by the RelA subunit of NF-κB
    • Johnson RF, Witzel II, Perkins ND (2011) p53-dependent regulation of mitochondrial energy production by the RelA subunit of NF-κB. Cancer Res 71(16):5588-5597.
    • (2011) Cancer Res , vol.71 , Issue.16 , pp. 5588-5597
    • Johnson, R.F.1    Witzel, I.I.2    Perkins, N.D.3
  • 38
    • 84877311822 scopus 로고    scopus 로고
    • Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses
    • Kenzelmann Broz D, Spano Mello S, Bieging KT, Jiang D, Dusek RL, et al. (2013) Global genomic profiling reveals an extensive p53-regulated autophagy program contributing to key p53 responses. Genes Dev 27(9):1016-31.
    • (2013) Genes Dev , vol.27 , Issue.9 , pp. 1016-1031
    • Kenzelmann Broz, D.1    Spano Mello, S.2    Bieging, K.T.3    Jiang, D.4    Dusek, R.L.5
  • 39
    • 57449100870 scopus 로고    scopus 로고
    • Design and analysis of ChIP-seq experiments for DNA-binding proteins
    • Kharchenko PV, Tolstorukov MY, Park PJ (2008) Design and analysis of ChIP-seq experiments for DNA-binding proteins. Nat Biotechnol 26:1351-1359.
    • (2008) Nat Biotechnol , vol.26 , pp. 1351-1359
    • Kharchenko, P.V.1    Tolstorukov, M.Y.2    Park, P.J.3
  • 40
    • 0242266463 scopus 로고    scopus 로고
    • The dynamic localization of the glucocorticoid receptor in rat C6 glioma cell mitochondria
    • DOI 10.1016/j.mce.2003.07.003
    • Koufali MM, Moutsatsou P, Sekeris CE, Breen KC (2003) The dynamic localization of the glucocorticoid receptor in rat C6 glioma cell mitochondria. Mol Cell Endocrinol 209(1-2):51-60. (Pubitemid 37353082)
    • (2003) Molecular and Cellular Endocrinology , vol.209 , Issue.1-2 , pp. 51-60
    • Koufali, M.-M.1    Moutsatsou, P.2    Sekeris, C.E.3    Breen, K.C.4
  • 41
    • 69649109364 scopus 로고    scopus 로고
    • Circos: An information aesthetic for comparative genomics
    • Krzywinski M, Schein J, Birol I, Connors J, Gascoyne R, et al. (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19(9):1639-45.
    • (2009) Genome Res , vol.19 , Issue.9 , pp. 1639-1645
    • Krzywinski, M.1    Schein, J.2    Birol, I.3    Connors, J.4    Gascoyne, R.5
  • 42
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL (2009) Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10(3):R25.
    • (2009) Genome Biol , vol.10 , Issue.3
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 44
    • 77958194568 scopus 로고    scopus 로고
    • Nuclear transcription factors in mammalian mitochondria
    • Leigh-Brown S, Enriquez JA, Odom DT (2010) Nuclear transcription factors in mammalian mitochondria. Genome Biol 11(7):215.
    • (2010) Genome Biol , vol.11 , Issue.7 , pp. 215
    • Leigh-Brown, S.1    Enriquez, J.A.2    Odom, D.T.3
  • 45
    • 84862777719 scopus 로고    scopus 로고
    • Distinct regulatory mechanisms and functions for p53-activated and p53-repressed DNA damage response genes in embryonic stem cells
    • Li M, He Y, Dubois W, Wu X, Shi J, et al. (2012) Distinct regulatory mechanisms and functions for p53-activated and p53-repressed DNA damage response genes in embryonic stem cells. Mol Cell 46(1):30-42.
    • (2012) Mol Cell , vol.46 , Issue.1 , pp. 30-42
    • Li, M.1    He, Y.2    Dubois, W.3    Wu, X.4    Shi, J.5
  • 46
    • 77956304154 scopus 로고    scopus 로고
    • Tom70 mediates activation of interferon regulatory factor 3 on mitochondria
    • Liu XY, Wei B, Shi HX, Shan YF, Wang C (2010) Tom70 mediates activation of interferon regulatory factor 3 on mitochondria. Cell Res 20(9):994-1011.
    • (2010) Cell Res , vol.20 , Issue.9 , pp. 994-1011
    • Liu, X.Y.1    Wei, B.2    Shi, H.X.3    Shan, Y.F.4    Wang, C.5
  • 47
    • 33847276654 scopus 로고    scopus 로고
    • Monoubiquitylation promotes mitochondrial p53 translocation
    • Marchenko ND, Wolff S, Erster S, Becker K, Moll UM (2007) Monoubiquitylation promotes mitochondrial p53 translocation. EMBO J 26(4):923-934.
    • (2007) EMBO J , vol.26 , Issue.4 , pp. 923-934
    • Marchenko, N.D.1    Wolff, S.2    Erster, S.3    Becker, K.4    Moll, U.M.5
  • 48
    • 0034717014 scopus 로고    scopus 로고
    • Death signal-induced localization of p53 protein to mitochondria: A potential role in apoptotic signaling
    • DOI 10.1074/jbc.275.21.16202
    • Marchenko ND, Zaika A, Moll UM (2000) Death signal-induced localization of p53 protein to mitochondria. A potential role in apoptotic signaling. J Biol Chem 275(21):16202-12. (Pubitemid 30366932)
    • (2000) Journal of Biological Chemistry , vol.275 , Issue.21 , pp. 16202-16212
    • Marchenko, N.D.1    Zaika, A.2    Moll, U.M.3
  • 49
    • 63449105579 scopus 로고    scopus 로고
    • Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome
    • Metodiev MD, Lesko N, Park CB, Cámara Y, Shi Y, et al. (2009) Methylation of 12S rRNA is necessary for in vivo stability of the small subunit of the mammalian mitochondrial ribosome. Cell Metab 9(4):386-397.
    • (2009) Cell Metab , vol.9 , Issue.4 , pp. 386-397
    • Metodiev, M.D.1    Lesko, N.2    Park, C.B.3    Cámara, Y.4    Shi, Y.5
  • 50
    • 78650331647 scopus 로고    scopus 로고
    • Identification of functional elements and regulatory circuits by Drosophila modENCODE
    • modENCODE Consortium
    • modENCODE Consortium, Roy S, Ernst J, Kharchenko PV, Kheradpour P, et al. (2010) Identification of functional elements and regulatory circuits by Drosophila modENCODE. Science 330(6012):1787-1797.
    • (2010) Science , vol.330 , Issue.6012 , pp. 1787-1797
    • Roy, S.1    Ernst, J.2    Kharchenko, P.V.3    Kheradpour, P.4
  • 51
    • 0034902861 scopus 로고    scopus 로고
    • Subcellular distribution of native estrogen receptor α and α isoforms in rabbit uterus and ovary
    • DOI 10.1002/jcb.1182
    • Monje P, Boland R (2001) Subcellular distribution of native estrogen receptor α and α isoforms in rabbit uterus and ovary. J Cell Biochem 82(3):467-79. (Pubitemid 32729410)
    • (2001) Journal of Cellular Biochemistry , vol.82 , Issue.3 , pp. 467-479
    • Monje, P.1    Boland, R.2
  • 53
    • 33749389932 scopus 로고    scopus 로고
    • Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire
    • DOI 10.1101/gr.4997306
    • Mortazavi A, Leeper Thompson EC, Garcia ST, Myers RM, Wold B (2006) Comparative genomics modeling of the NRSF/REST repressor network: from single conserved sites to genome-wide repertoire. Genome Res 16(10):1208-1221. (Pubitemid 44506954)
    • (2006) Genome Research , vol.16 , Issue.10 , pp. 1208-1221
    • Mortazavi, A.1    Thompson, E.C.L.2    Garcia, S.T.3    Myers, R.M.4    Wold, B.5
  • 54
    • 84865121188 scopus 로고    scopus 로고
    • An encyclopedia of mouse DNA elements (Mouse ENCODE)
    • Mouse ENCODE Consortium
    • Mouse ENCODE Consortium, Stamatoyannopoulos JA, Snyder M, Hardison R, Ren B, et al. (2012) An encyclopedia of mouse DNA elements (Mouse ENCODE). Genome Biol 13(8):418.
    • (2012) Genome Biol , vol.13 , Issue.8 , pp. 418
    • Stamatoyannopoulos, J.A.1    Snyder, M.2    Hardison, R.3    Ren, B.4
  • 55
    • 50549218360 scopus 로고
    • Deoxyribonucleic acid in isolated rat-liver mitochondria
    • Nass S, Nass MM, Hennix U (1965) Deoxyribonucleic acid in isolated rat-liver mitochondria. Biochim Biophys Acta 95:426435.
    • (1965) Biochim Biophys Acta , vol.95 , pp. 426435
    • Nass, S.1    Nass, M.M.2    Hennix, U.3
  • 56
    • 84865708757 scopus 로고    scopus 로고
    • An expansive human regulatory lexicon encoded in transcription factor footprints
    • Neph S, Vierstra J, Stergachis AB, Reynolds AP, Haugen E, et al. (2012) An expansive human regulatory lexicon encoded in transcription factor footprints. Nature 489(7414):83-90.
    • (2012) Nature , vol.489 , Issue.7414 , pp. 83-90
    • Neph, S.1    Vierstra, J.2    Stergachis, A.B.3    Reynolds, A.P.4    Haugen, E.5
  • 57
    • 0042839645 scopus 로고    scopus 로고
    • Transcription factor activator protein-1 expressed by kainate treatment can bind to the non-coding region of mitochondrial genome in murine hippocampus
    • DOI 10.1002/jnr.10720
    • Ogita K, Fujinami Y, Kitano M, Yoneda Y (2003) Transcription factor activator protein-1 expressed by kainate treatment can bind to the non-coding region of mitochondrial genome in murine hippocampus. J Neurosci Res 73(6):794-802. (Pubitemid 37071733)
    • (2003) Journal of Neuroscience Research , vol.73 , Issue.6 , pp. 794-802
    • Ogita, K.1    Fujinami, Y.2    Kitano, M.3    Yoneda, Y.4
  • 58
    • 0036550280 scopus 로고    scopus 로고
    • Localization of Activator Protein-1 Complex with DNA Binding Activity in Mitochondria of Murine Brain after in Vivo Treatment with Kainate
    • Ogita K, Okuda H, Kitano M, Fujinami Y, Ozaki K, et al. (2002) Localization of activator protein-1 complex with DNA binding activity in mitochondria of murine brain after in vivo treatment with kainate. J Neurosci 22(7):2561-70. (Pubitemid 37465805)
    • (2002) Journal of Neuroscience , vol.22 , Issue.7 , pp. 2561-2570
    • Ogita, K.1    Okuda, H.2    Kitano, M.3    Fujinami, Y.4    Ozaki, K.5    Yoneda, Y.6
  • 59
    • 32544445370 scopus 로고    scopus 로고
    • The mitochondrion as a primary site of action of steroid and thyroid hormones: Presence and action of steroid and thyroid hormone receptors in mitochondria of animal cells
    • DOI 10.1016/j.mce.2005.11.025, PII S0303720705004314
    • Psarra AM, Solakidi S, Sekeris CE (2006) The mitochondrion as a primary site of action of steroid and thyroid hormones: presence and action of steroid and thyroid hormone receptors in mitochondria of animal cells. Mol Cell Endocrinol 246(1-2):21-33. (Pubitemid 43238393)
    • (2006) Molecular and Cellular Endocrinology , vol.246 , Issue.1-2 , pp. 21-33
    • Psarra, A.-M.G.1    Solakidi, S.2    Sekeris, C.E.3
  • 60
    • 84866409544 scopus 로고    scopus 로고
    • The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genes
    • Reddy TE, Gertz J, Crawford GE, Garabedian MJ, Myers RM (2012) The hypersensitive glucocorticoid response specifically regulates period 1 and expression of circadian genes. Mol Cell Biol 32(18):3756-67.
    • (2012) Mol Cell Biol , vol.32 , Issue.18 , pp. 3756-3767
    • Reddy, T.E.1    Gertz, J.2    Crawford, G.E.3    Garabedian, M.J.4    Myers, R.M.5
  • 61
    • 73249130316 scopus 로고    scopus 로고
    • Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation
    • Reddy TE, Pauli F, Sprouse RO, Neff NF, Newberry KM, et al. (2009) Genomic determination of the glucocorticoid response reveals unexpected mechanisms of gene regulation. Genome Res 19(12):2163-71.
    • (2009) Genome Res , vol.19 , Issue.12 , pp. 2163-2171
    • Reddy, T.E.1    Pauli, F.2    Sprouse, R.O.3    Neff, N.F.4    Newberry, K.M.5
  • 63
    • 0014070709 scopus 로고
    • On the origin of mitosing cells
    • Sagan L (1967) On the origin of mitosing cells. J Theor Biol 14(3):255-274.
    • (1967) J Theor Biol , vol.14 , Issue.3 , pp. 255-274
    • Sagan, L.1
  • 64
    • 0026054963 scopus 로고
    • Organization of multiple nucleoids and DNA molecules in mitochondria of a human cell
    • Satoh M, Kuroiwa T (1991) Organization of multiple nucleoids and DNA molecules in mitochondria of a human cell. Exp Cell Res 196:137140
    • (1991) Exp Cell Res , vol.196 , pp. 137140
    • Satoh, M.1    Kuroiwa, T.2
  • 65
    • 84878849371 scopus 로고    scopus 로고
    • Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation
    • Sebastian S, Faralli H, Yao Z, Rakopoulos P, Palii C, et al. (2013) Tissue-specific splicing of a ubiquitously expressed transcription factor is essential for muscle differentiation. Genes Dev 27(11):1247-1259.
    • (2013) Genes Dev , vol.27 , Issue.11 , pp. 1247-1259
    • Sebastian, S.1    Faralli, H.2    Yao, Z.3    Rakopoulos, P.4    Palii, C.5
  • 66
    • 0030920779 scopus 로고    scopus 로고
    • Mitochondrial DNA maintenance in vertebrates
    • Shadel GS, Clayton DA (1997) Mitochondrial DNA maintenance in vertebrates. Annu Rev Biochem 66:409-435.
    • (1997) Annu Rev Biochem , vol.66 , pp. 409-435
    • Shadel, G.S.1    Clayton, D.A.2
  • 67
    • 79952205241 scopus 로고    scopus 로고
    • Direct regulation of complex I by mitochondrial MEF2D is disrupted in a mouse model of Parkinson disease and in human patients
    • She H, Yang Q, Shepherd K, Smith Y, Miller G, et al. (2011) Direct regulation of complex I by mitochondrial MEF2D is disrupted in a mouse model of Parkinson disease and in human patients. J Clin Invest 121(3):930-940.
    • (2011) J Clin Invest , vol.121 , Issue.3 , pp. 930-940
    • She, H.1    Yang, Q.2    Shepherd, K.3    Smith, Y.4    Miller, G.5
  • 68
    • 84864324029 scopus 로고    scopus 로고
    • GRIM-19-mediated translocation of STAT3 to mitochondria is necessary for TNF-induced necroptosis
    • Shulga N, Pastorino JG (2012) GRIM-19-mediated translocation of STAT3 to mitochondria is necessary for TNF-induced necroptosis. J Cell Sci 125(Pt 12):2995-3003.
    • (2012) J Cell Sci , vol.125 , Issue.PART 12 , pp. 2995-3003
    • Shulga, N.1    Pastorino, J.G.2
  • 69
    • 79952461851 scopus 로고    scopus 로고
    • The core human mitochondrial transcription initiation complex: It only takes two to tango
    • Shutt TE, Bestwick M, Shadel GS (2011) The core human mitochondrial transcription initiation complex: It only takes two to tango. Transcription 2(2):55-59.
    • (2011) Transcription , vol.2 , Issue.2 , pp. 55-59
    • Shutt, T.E.1    Bestwick, M.2    Shadel, G.S.3
  • 70
    • 80053539409 scopus 로고    scopus 로고
    • Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity
    • Song L, Zhang Z, Grasfeder LL, Boyle AP, Giresi PG, et al. (2011) Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity. Genome Res 21(10):1757-1767.
    • (2011) Genome Res , vol.21 , Issue.10 , pp. 1757-1767
    • Song, L.1    Zhang, Z.2    Grasfeder, L.L.3    Boyle, A.P.4    Giresi, P.G.5
  • 71
    • 80051943914 scopus 로고    scopus 로고
    • Mitochondrial-targeted Signal transducer and activator of transcription 3 (STAT3) protects against ischemia-induced changes in the electron transport chain and the generation of reactive oxygen species
    • Szczepanek K, Chen Q, Derecka M, Salloum FN, Zhang Q, et al. (2011) Mitochondrial-targeted Signal transducer and activator of transcription 3 (STAT3) protects against ischemia-induced changes in the electron transport chain and the generation of reactive oxygen species. J Biol Chem 286(34):29610-29620.
    • (2011) J Biol Chem , vol.286 , Issue.34 , pp. 29610-29620
    • Szczepanek, K.1    Chen, Q.2    Derecka, M.3    Salloum, F.N.4    Zhang, Q.5
  • 72
    • 84858007745 scopus 로고    scopus 로고
    • Cytoprotection by the modulation of mitochondrial electron transport chain: The emerging role of mitochondrial STAT3
    • Szczepanek K, Chen Q, Larner AC, Lesnefsky EJ (2012) Cytoprotection by the modulation of mitochondrial electron transport chain: the emerging role of mitochondrial STAT3. Mitochondrion 12(2):180-189.
    • (2012) Mitochondrion , vol.12 , Issue.2 , pp. 180-189
    • Szczepanek, K.1    Chen, Q.2    Larner, A.C.3    Lesnefsky, E.J.4
  • 73
    • 84864315728 scopus 로고    scopus 로고
    • Multi-tasking: Nuclear transcription factors with novel roles in the mitochondria
    • Szczepanek K, Lesnefsky EJ, Larner AC (2012). Multi-tasking: nuclear transcription factors with novel roles in the mitochondria. Trends Cell Biol 22(8):429-437.
    • (2012) Trends Cell Biol , vol.22 , Issue.8 , pp. 429-437
    • Szczepanek, K.1    Lesnefsky, E.J.2    Larner, A.C.3
  • 74
    • 78449299224 scopus 로고    scopus 로고
    • Mosaic origin of the mitochondrial proteome
    • Szklarczyk R, Huynen MA (2010) Mosaic origin of the mitochondrial proteome. Proteomics 10(22):4012-4024.
    • (2010) Proteomics , vol.10 , Issue.22 , pp. 4012-4024
    • Szklarczyk, R.1    Huynen, M.A.2
  • 75
    • 84865755978 scopus 로고    scopus 로고
    • The accessible chromatin landscape of the human genome
    • Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, et al. (2012) The accessible chromatin landscape of the human genome. Nature 489(7414):75-82.
    • (2012) Nature , vol.489 , Issue.7414 , pp. 75-82
    • Thurman, R.E.1    Rynes, E.2    Humbert, R.3    Vierstra, J.4    Maurano, M.T.5
  • 76
    • 67349086630 scopus 로고    scopus 로고
    • The mitochondrial p53 pathway
    • Vaseva AV, Moll UM (2009) The mitochondrial p53 pathway. Biochim Biophys Acta 1787(5):414-420.
    • (2009) Biochim Biophys Acta , vol.1787 , Issue.5 , pp. 414-420
    • Vaseva, A.V.1    Moll, U.M.2
  • 77
    • 84865852567 scopus 로고    scopus 로고
    • Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
    • Wang J, Zhuang J, Iyer S, Lin X, Whitfield TW, et al. (2012) Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors. Genome Res 22(9):1798-1812.
    • (2012) Genome Res , vol.22 , Issue.9 , pp. 1798-1812
    • Wang, J.1    Zhuang, J.2    Iyer, S.3    Lin, X.4    Whitfield, T.W.5
  • 78
    • 84883188664 scopus 로고    scopus 로고
    • Genome-wide analysis reveals coating of the mitochondrial genome by TFAM
    • doi: 10.1371/journal.pone.0074513
    • Wang YE, Marinov GK, Wold BJ, Chan DC (2013) Genome-wide analysis reveals coating of the mitochondrial genome by TFAM. PLoS ONE 8(8):e74513. doi: 10.1371/journal.pone.0074513
    • (2013) PLoS ONE , vol.8 , Issue.8
    • Wang, Y.E.1    Marinov, G.K.2    Wold, B.J.3    Chan, D.C.4
  • 79
    • 59849101586 scopus 로고    scopus 로고
    • Function of mitochondrial Stat3 in cellular respiration
    • Wegrzyn J, Potla R, Chwae YJ, Sepuri NB, Zhang Q, et al. (2009) Function of mitochondrial Stat3 in cellular respiration. Science 323(5915):793-797.
    • (2009) Science , vol.323 , Issue.5915 , pp. 793-797
    • Wegrzyn, J.1    Potla, R.2    Chwae, Y.J.3    Sepuri, N.B.4    Zhang, Q.5
  • 80
    • 0022974362 scopus 로고
    • Mitochondrial gene expression in mammalian striated muscle. Evidence that variation in gene dosage is the major regulatory event
    • Williams RS (1986) Mitochondrial gene expression in mammalian striated muscle. Evidence that variation in gene dosage is the major regulatory event. J Biol Chem 261(26):12390-4.
    • (1986) J Biol Chem , vol.261 , Issue.26 , pp. 12390-12394
    • Williams, R.S.1
  • 81
    • 0028999361 scopus 로고
    • A 43-kDa protein related to c-Erb A α1 is located in the mitochondrial matrix of rat liver
    • Wrutniak C, Cassar-Malek I, Marchal S, Rascle A, Heusser S, et al. (1995) A 43-kDa protein related to c-Erb A α1 is located in the mitochondrial matrix of rat liver. J Biol Chem 270(27):16347-54.
    • (1995) J Biol Chem , vol.270 , Issue.27 , pp. 16347-16354
    • Wrutniak, C.1    Cassar-Malek, I.2    Marchal, S.3    Rascle, A.4    Heusser, S.5
  • 83
    • 0038418297 scopus 로고    scopus 로고
    • p53 physically interacts with mitochondrial transcription factor A and differentially regulates binding to damaged DNA
    • Yoshida Y, Izumi H, Torigoe T, Ishiguchi H, Itoh H, et al. (2003) P53 physically interacts with mitochondrial transcription factor A and differentially regulates binding to damaged DNA. Cancer Res 63(13):3729-34. (Pubitemid 36793059)
    • (2003) Cancer Research , vol.63 , Issue.13 , pp. 3729-3734
    • Yoshida, Y.1    Izumi, H.2    Torigoe, T.3    Ishiguchi, H.4    Itoh, H.5    Kang, D.6    Kohno, K.7


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