-
1
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, Baba M, Datsenko KA, Tomita M, Wanner BL, Mori H. 2006. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: The Keio collection Mol Syst Biol 2:0008.
-
(2006)
Mol Syst Biol
, vol.2
, pp. 0008
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
2
-
-
57349135305
-
Site-directed mutagenesis reveals putative substrate binding residues in the Escherichia coli RND efflux pump AcrB
-
Bohnert JA, Schuster S, Seeger MA, Fahnrich E, Pos KM, Kern WV. 2008. Site-directed mutagenesis reveals putative substrate binding residues in the Escherichia coli RND efflux pump AcrB. J Bacteriol 190(24):8225-8229.
-
(2008)
J Bacteriol
, vol.190
, Issue.24
, pp. 8225-8229
-
-
Bohnert, J.A.1
Schuster, S.2
Seeger, M.A.3
Fahnrich, E.4
Pos, K.M.5
Kern, W.V.6
-
3
-
-
84874818199
-
Transporter engineering for improved tolerance against alkane biofuels in Saccharomyces cerevisiae
-
Chen B, Ling H, Chang MW. 2013. Transporter engineering for improved tolerance against alkane biofuels in Saccharomyces cerevisiae. Biotechnol Biofuels 6(1):21.
-
(2013)
Biotechnol Biofuels
, vol.6
, Issue.1
, pp. 21
-
-
Chen, B.1
Ling, H.2
Chang, M.W.3
-
4
-
-
84877319992
-
Transporter-mediated biofuel secretion
-
Doshi R, Nguyen T, Chang G. 2013. Transporter-mediated biofuel secretion. Proc Natl Acad Sci USA 110(19):7642-7647.
-
(2013)
Proc Natl Acad Sci USA
, vol.110
, Issue.19
, pp. 7642-7647
-
-
Doshi, R.1
Nguyen, T.2
Chang, G.3
-
5
-
-
84901254487
-
Structure of the AcrAB-TolC multidrug efflux pump
-
Du D, Wang Z, James NR, Voss JE, Klimont E, Ohene-Agyei T, Venter H, Chiu W, Luisi BF. 2014. Structure of the AcrAB-TolC multidrug efflux pump. Nature 509(7501):512-515.
-
(2014)
Nature
, vol.509
, Issue.7501
, pp. 512-515
-
-
Du, D.1
Wang, Z.2
James, N.R.3
Voss, J.E.4
Klimont, E.5
Ohene-Agyei, T.6
Venter, H.7
Chiu, W.8
Luisi, B.F.9
-
6
-
-
79955806186
-
Engineering microbial biofuel tolerance and export using efflux pumps
-
Dunlop MJ, Dossani ZY, Szmidt HL, Chu HC, Lee TS, Keasling JD, Hadi MZ, Mukhopadhyay A. 2011. Engineering microbial biofuel tolerance and export using efflux pumps. Mol Syst Biol 7:487.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 487
-
-
Dunlop, M.J.1
Dossani, Z.Y.2
Szmidt, H.L.3
Chu, H.C.4
Lee, T.S.5
Keasling, J.D.6
Hadi, M.Z.7
Mukhopadhyay, A.8
-
7
-
-
84859567740
-
Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop
-
others.
-
Eicher T, Cha HJ, Seeger MA, Brandstatter L, El-Delik J, Bohnert JA, Kern WV, Verrey F, Grutter MG, Diederichs K, and others. 2012. Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop. Proc Natl Acad Sci USA 109(15):5687-5692.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.15
, pp. 5687-5692
-
-
Eicher, T.1
Cha, H.J.2
Seeger, M.A.3
Brandstatter, L.4
El-Delik, J.5
Bohnert, J.A.6
Kern, W.V.7
Verrey, F.8
Grutter, M.G.9
Diederichs, K.10
-
8
-
-
84896129574
-
Enhancing tolerance to short-chain alcohols by engineering the Escherichia coli AcrB efflux pump to secrete the non-native substrate n-butanol
-
Fisher MA, Boyarskiy S, Yamada MR, Kong N, Bauer S, Tullman-Ercek D. 2013. Enhancing tolerance to short-chain alcohols by engineering the Escherichia coli AcrB efflux pump to secrete the non-native substrate n-butanol. ACS Synth Biol 3(1):30-40.
-
(2013)
ACS Synth Biol
, vol.3
, Issue.1
, pp. 30-40
-
-
Fisher, M.A.1
Boyarskiy, S.2
Yamada, M.R.3
Kong, N.4
Bauer, S.5
Tullman-Ercek, D.6
-
9
-
-
84877878130
-
Directed evolution of an E. coli inner membrane transporter for improved efflux of biofuel molecules
-
Foo JL, Leong SS. 2013. Directed evolution of an E. coli inner membrane transporter for improved efflux of biofuel molecules. Biotechnol Biofuels 6(1):81.
-
(2013)
Biotechnol Biofuels
, vol.6
, Issue.1
, pp. 81
-
-
Foo, J.L.1
Leong, S.S.2
-
10
-
-
84903714435
-
Development of a native Escherichia coli induction system for ionic liquid tolerance
-
others.
-
Frederix M, Hutter K, Leu J, Batth TS, Turner WJ, Ruegg TL, Blanch HW, Simmons BA, Adams PD, Keasling JD, and others. 2014. Development of a native Escherichia coli induction system for ionic liquid tolerance. PLoS ONE 9(7):e101115.
-
(2014)
PLoS ONE
, vol.9
, Issue.7
, pp. e101115
-
-
Frederix, M.1
Hutter, K.2
Leu, J.3
Batth, T.S.4
Turner, W.J.5
Ruegg, T.L.6
Blanch, H.W.7
Simmons, B.A.8
Adams, P.D.9
Keasling, J.D.10
-
11
-
-
67349270900
-
Enzymatic assembly of DNA molecules up to several hundred kilobases
-
Gibson DG, Young L, Chuang RY, Venter JC, Hutchison CA 3rd, Smith HO. 2009. Enzymatic assembly of DNA molecules up to several hundred kilobases. Nat Methods 6(5):343-345.
-
(2009)
Nat Methods
, vol.6
, Issue.5
, pp. 343-345
-
-
Gibson, D.G.1
Young, L.2
Chuang, R.Y.3
Venter, J.C.4
Hutchison, C.3.5
Smith, H.O.6
-
12
-
-
84867488931
-
Design, implementation and practice of JBEI-ICE: An open source biological part registry platform and tools
-
Ham TS, Dmytriv Z, Plahar H, Chen J, Hillson NJ, Keasling JD. 2012. Design, implementation and practice of JBEI-ICE: An open source biological part registry platform and tools. Nucleic Acids Res 40:e141.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. e141
-
-
Ham, T.S.1
Dmytriv, Z.2
Plahar, H.3
Chen, J.4
Hillson, N.J.5
Keasling, J.D.6
-
13
-
-
84867374260
-
Conserved small protein associates with the multidrug efflux pump AcrB and differentially affects antibiotic resistance
-
Hobbs EC, Yin X, Paul BJ, Astarita JL, Storz G. 2012. Conserved small protein associates with the multidrug efflux pump AcrB and differentially affects antibiotic resistance. Proc Natl Acad Sci USA 109(41):16696-16701.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.41
, pp. 16696-16701
-
-
Hobbs, E.C.1
Yin, X.2
Paul, B.J.3
Astarita, J.L.4
Storz, G.5
-
14
-
-
80053598150
-
Vestibules are part of the substrate path in the multidrug efflux transporter AcrB of Escherichia coli
-
Husain F, Bikhchandani M, Nikaido H. 2011. Vestibules are part of the substrate path in the multidrug efflux transporter AcrB of Escherichia coli. J Bacteriol 193(20):5847-5849.
-
(2011)
J Bacteriol
, vol.193
, Issue.20
, pp. 5847-5849
-
-
Husain, F.1
Bikhchandani, M.2
Nikaido, H.3
-
15
-
-
78649344142
-
Substrate path in the AcrB multidrug efflux pump of Escherichia coli
-
Husain F, Nikaido H. 2010. Substrate path in the AcrB multidrug efflux pump of Escherichia coli. Mol Microbiol 78(2):320-330.
-
(2010)
Mol Microbiol
, vol.78
, Issue.2
, pp. 320-330
-
-
Husain, F.1
Nikaido, H.2
-
16
-
-
77952491139
-
Metabolic engineering for production of biorenewable fuels and chemicals: Contributions of synthetic biology
-
Jarboe LR, Zhang X, Wang X, Moore JC, Shanmugam KT, Ingram LO. 2010. Metabolic engineering for production of biorenewable fuels and chemicals: Contributions of synthetic biology. J Biomed Biotechnol 2010:761042.
-
(2010)
J Biomed Biotechnol
, vol.2010
, pp. 761042
-
-
Jarboe, L.R.1
Zhang, X.2
Wang, X.3
Moore, J.C.4
Shanmugam, K.T.5
Ingram, L.O.6
-
17
-
-
80053175916
-
BglBrick vectors and datasheets: A synthetic biology platform for gene expression
-
Lee TS, Krupa RA, Zhang F, Hajimorad M, Holtz WJ, Prasad N, Lee SK, Keasling JD. 2011. BglBrick vectors and datasheets: A synthetic biology platform for gene expression. J Biol Eng 5:12.
-
(2011)
J Biol Eng
, vol.5
, pp. 12
-
-
Lee, T.S.1
Krupa, R.A.2
Zhang, F.3
Hajimorad, M.4
Holtz, W.J.5
Prasad, N.6
Lee, S.K.7
Keasling, J.D.8
-
18
-
-
80052027792
-
Styrene biosynthesis from glucose by engineered E. coli
-
McKenna R, Nielsen DR. 2011. Styrene biosynthesis from glucose by engineered E. coli. Metab Eng 13(5):544-554.
-
(2011)
Metab Eng
, vol.13
, Issue.5
, pp. 544-554
-
-
McKenna, R.1
Nielsen, D.R.2
-
19
-
-
0037057652
-
Crystal structure of bacterial multidrug efflux transporter AcrB
-
Murakami S, Nakashima R, Yamashita E, Yamaguchi A. 2002. Crystal structure of bacterial multidrug efflux transporter AcrB. Nature 419(6907):587-593.
-
(2002)
Nature
, vol.419
, Issue.6907
, pp. 587-593
-
-
Murakami, S.1
Nakashima, R.2
Yamashita, E.3
Yamaguchi, A.4
-
20
-
-
65249146929
-
Multidrug resistance in bacteria
-
Nikaido H. 2009. Multidrug resistance in bacteria. Annu Rev Biochem 78:119-146.
-
(2009)
Annu Rev Biochem
, vol.78
, pp. 119-146
-
-
Nikaido, H.1
-
22
-
-
0036405482
-
Mechanisms of solvent tolerance in gram-negative bacteria
-
Ramos JL, Duque E, Gallegos MT, Godoy P, Ramos-Gonzalez MI, Rojas A, Teran W, Segura A. 2002. Mechanisms of solvent tolerance in gram-negative bacteria. Annu Rev Microbiol 56:743-768.
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 743-768
-
-
Ramos, J.L.1
Duque, E.2
Gallegos, M.T.3
Godoy, P.4
Ramos-Gonzalez, M.I.5
Rojas, A.6
Teran, W.7
Segura, A.8
-
23
-
-
0024248526
-
Cloning of the Alcaligenes eutrophus genes for synthesis of poly-beta-hydroxybutyric acid (PHB) and synthesis of PHB in Escherichia coli
-
Schubert P, Steinbuchel A, Schlegel HG. 1988. Cloning of the Alcaligenes eutrophus genes for synthesis of poly-beta-hydroxybutyric acid (PHB) and synthesis of PHB in Escherichia coli. J Bacteriol 170(12):5837-5847.
-
(1988)
J Bacteriol
, vol.170
, Issue.12
, pp. 5837-5847
-
-
Schubert, P.1
Steinbuchel, A.2
Schlegel, H.G.3
-
24
-
-
33748310520
-
Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism
-
Seeger MA, Schiefner A, Eicher T, Verrey F, Diederichs K, Pos KM. 2006. Structural asymmetry of AcrB trimer suggests a peristaltic pump mechanism. Science 313(5791):1295-1298.
-
(2006)
Science
, vol.313
, Issue.5791
, pp. 1295-1298
-
-
Seeger, M.A.1
Schiefner, A.2
Eicher, T.3
Verrey, F.4
Diederichs, K.5
Pos, K.M.6
-
25
-
-
38849185972
-
Engineered disulfide bonds support the functional rotation mechanism of multidrug efflux pump AcrB
-
Seeger MA, von Ballmoos C, Eicher T, Brandstatter L, Verrey F, Diederichs K, Pos KM. 2008. Engineered disulfide bonds support the functional rotation mechanism of multidrug efflux pump AcrB. Nat Struc Mol Biol 15(2):199-205.
-
(2008)
Nat Struc Mol Biol
, vol.15
, Issue.2
, pp. 199-205
-
-
Seeger, M.A.1
von Ballmoos, C.2
Eicher, T.3
Brandstatter, L.4
Verrey, F.5
Diederichs, K.6
Pos, K.M.7
-
26
-
-
33846363597
-
Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors
-
Sennhauser G, Amstutz P, Briand C, Storchenegger O, Grutter MG. 2007. Drug export pathway of multidrug exporter AcrB revealed by DARPin inhibitors. PLoS Biol 5(1):e7.
-
(2007)
PLoS Biol
, vol.5
, Issue.1
, pp. e7
-
-
Sennhauser, G.1
Amstutz, P.2
Briand, C.3
Storchenegger, O.4
Grutter, M.G.5
-
27
-
-
0029048826
-
Mechanisms of membrane toxicity of hydrocarbons
-
Sikkema J, de Bont JA, Poolman B. 1995. Mechanisms of membrane toxicity of hydrocarbons. Microbiol Rev 59(2):201-222.
-
(1995)
Microbiol Rev
, vol.59
, Issue.2
, pp. 201-222
-
-
Sikkema, J.1
de Bont, J.A.2
Poolman, B.3
-
28
-
-
33749632749
-
Conformation of the AcrB multidrug efflux pump in mutants of the putative proton relay pathway
-
Su CC, Li M, Gu R, Takatsuka Y, McDermott G, Nikaido H, Yu EW. 2006. Conformation of the AcrB multidrug efflux pump in mutants of the putative proton relay pathway. J Bacteriol 188(20):7290-7296.
-
(2006)
J Bacteriol
, vol.188
, Issue.20
, pp. 7290-7296
-
-
Su, C.C.1
Li, M.2
Gu, R.3
Takatsuka, Y.4
McDermott, G.5
Nikaido, H.6
Yu, E.W.7
-
29
-
-
77951074736
-
Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli
-
Takatsuka Y, Chen C, Nikaido H. 2010. Mechanism of recognition of compounds of diverse structures by the multidrug efflux pump AcrB of Escherichia coli. Proc Natl Acad Sci USA 107(15):6559-6565.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, Issue.15
, pp. 6559-6565
-
-
Takatsuka, Y.1
Chen, C.2
Nikaido, H.3
-
30
-
-
63049131979
-
Covalently linked trimer of the AcrB multidrug efflux pump provides support for the functional rotating mechanism
-
Takatsuka Y, Nikaido H. 2009. Covalently linked trimer of the AcrB multidrug efflux pump provides support for the functional rotating mechanism. J Bacteriol 191(6):1729-1737.
-
(2009)
J Bacteriol
, vol.191
, Issue.6
, pp. 1729-1737
-
-
Takatsuka, Y.1
Nikaido, H.2
-
31
-
-
84855448083
-
Site-directed disulfide cross-linking to probe conformational changes of a transporter during its functional cycle: Escherichia coli AcrB multidrug exporter as an example
-
Takatsuka Y, Nikaido H. 2010. Site-directed disulfide cross-linking to probe conformational changes of a transporter during its functional cycle: Escherichia coli AcrB multidrug exporter as an example. Method Mol Biol 634:343-354.
-
(2010)
Method Mol Biol
, vol.634
, pp. 343-354
-
-
Takatsuka, Y.1
Nikaido, H.2
-
32
-
-
79955388745
-
Sequential mechanism of assembly of multidrug efflux pump AcrAB-TolC
-
Tikhonova EB, Yamada Y, Zgurskaya HI. 2011. Sequential mechanism of assembly of multidrug efflux pump AcrAB-TolC. Chem Biol 18(4):454-463.
-
(2011)
Chem Biol
, vol.18
, Issue.4
, pp. 454-463
-
-
Tikhonova, E.B.1
Yamada, Y.2
Zgurskaya, H.I.3
-
33
-
-
0033170990
-
The RND permease superfamily: An ancient, ubiquitous and diverse family that includes human disease and development proteins
-
Tseng TT, Gratwick KS, Kollman J, Park D, Nies DH, Goffeau A, Saier MH, Jr. 1999. The RND permease superfamily: An ancient, ubiquitous and diverse family that includes human disease and development proteins. J Mol Microbiol Biotechnol 1(1):107-125.
-
(1999)
J Mol Microbiol Biotechnol
, vol.1
, Issue.1
, pp. 107-125
-
-
Tseng, T.T.1
Gratwick, K.S.2
Kollman, J.3
Park, D.4
Nies, D.H.5
Goffeau, A.6
Saier Jr, M.H.7
-
34
-
-
79960204167
-
Effect of the F610A mutation on substrate extrusion in the AcrB transporter: Explanation and rationale by molecular dynamics simulations
-
Vargiu AV, Collu F, Schulz R, Pos KM, Zacharias M, Kleinekathofer U, Ruggerone P. 2011. Effect of the F610A mutation on substrate extrusion in the AcrB transporter: Explanation and rationale by molecular dynamics simulations. J Am Chem Soc 133(28):10704-10707.
-
(2011)
J Am Chem Soc
, vol.133
, Issue.28
, pp. 10704-10707
-
-
Vargiu, A.V.1
Collu, F.2
Schulz, R.3
Pos, K.M.4
Zacharias, M.5
Kleinekathofer, U.6
Ruggerone, P.7
-
35
-
-
84874431455
-
Multidrug binding properties of the AcrB efflux pump characterized by molecular dynamics simulations
-
Vargiu AV, Nikaido H. 2012. Multidrug binding properties of the AcrB efflux pump characterized by molecular dynamics simulations. Proc Natl Acad Sci USA 109(50):20637-20642.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
, Issue.50
, pp. 20637-20642
-
-
Vargiu, A.V.1
Nikaido, H.2
-
36
-
-
34848823739
-
Consequences of membrane protein overexpression in Escherichia coli
-
Wagner S, Baars L, Ytterberg AJ, Klussmeier A, Wagner CS, Nord O, Nygren PA, van Wijk KJ, de Gier JW. 2007. Consequences of membrane protein overexpression in Escherichia coli. Mol Cell Proteom 6(9):1527-1550.
-
(2007)
Mol Cell Proteom
, vol.6
, Issue.9
, pp. 1527-1550
-
-
Wagner, S.1
Baars, L.2
Ytterberg, A.J.3
Klussmeier, A.4
Wagner, C.S.5
Nord, O.6
Nygren, P.A.7
van Wijk, K.J.8
de Gier, J.W.9
-
37
-
-
82655183574
-
AcrB trimer stability and efflux activity, insight from mutagenesis studies
-
Yu L, Lu W, Wei Y. 2011. AcrB trimer stability and efflux activity, insight from mutagenesis studies. PloS ONE 6(12):e28390.
-
(2011)
PloS ONE
, vol.6
, Issue.12
, pp. e28390
-
-
Yu, L.1
Lu, W.2
Wei, Y.3
|