메뉴 건너뛰기




Volumn 9, Issue 7, 2014, Pages

Development of a native Escherichia coli induction system for ionic liquid tolerance

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL PROTEIN; IONIC LIQUID; PROTEIN EILA; UNCLASSIFIED DRUG; BACTERIAL RNA; EILA PROTEIN, E COLI; ESCHERICHIA COLI PROTEIN; TRANSCRIPTOME;

EID: 84903714435     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0101115     Document Type: Article
Times cited : (30)

References (46)
  • 1
    • 23844451085 scopus 로고    scopus 로고
    • Comparative sugar recovery data from laboratory scale application of leading pretreatment technologies to corn stover
    • DOI 10.1016/j.biortech.2005.01.018, PII S0960852405000714
    • Wyman CE, Dale BE, Elander RT, Holtzapple M, Ladisch MR, et al. (2005) Comparative sugar recovery data from laboratory scale application of leading pretreatment technologies to corn stover. Bioresour Technol 96: 2026-2032. (Pubitemid 41174572)
    • (2005) Bioresource Technology , vol.96 , Issue.18 SPEC. ISS. , pp. 2026-2032
    • Wyman, C.E.1    Dale, B.E.2    Elander, R.T.3    Holtzapple, M.4    Ladisch, M.R.5    Lee, Y.Y.6
  • 3
    • 74049138742 scopus 로고    scopus 로고
    • The impacts of pretreatment on the fermentability of pretreated lignocellulosic biomass: A comparative evaluation between ammonia fiber expansion and dilute acid pretreatment
    • Lau MW, Gunawan C, Dale BE (2009) The impacts of pretreatment on the fermentability of pretreated lignocellulosic biomass: a comparative evaluation between ammonia fiber expansion and dilute acid pretreatment. Biotechnology for Biofuels 2.
    • (2009) Biotechnology for Biofuels , vol.2
    • Lau, M.W.1    Gunawan, C.2    Dale, B.E.3
  • 4
    • 64049092446 scopus 로고    scopus 로고
    • Effect of hydrothermolysis process conditions on pretreated switchgrass composition and ethanol yield by SSF with Kluyveromyces marxianus IMB4
    • Suryawati L, Wilkins MR, Bellmer DD, Huhnke RL, Maness NO, et al. (2009) Effect of hydrothermolysis process conditions on pretreated switchgrass composition and ethanol yield by SSF with Kluyveromyces marxianus IMB4. Process Biochemistry 44: 540-545.
    • (2009) Process Biochemistry , vol.44 , pp. 540-545
    • Suryawati, L.1    Wilkins, M.R.2    Bellmer, D.D.3    Huhnke, R.L.4    Maness, N.O.5
  • 5
    • 77952889993 scopus 로고    scopus 로고
    • Evaluation of the biocompatibile ionic liquid 1-methyl-3- methylimidazolium dimethylphosphite pretreatment of corn cob for improved saccharification
    • Li Q, Jiang XL, He YC, Li LZ, Xian M, et al. (2010) Evaluation of the biocompatibile ionic liquid 1-methyl-3-methylimidazolium dimethylphosphite pretreatment of corn cob for improved saccharification. Applied Microbiology and Biotechnology 87: 117-126.
    • (2010) Applied Microbiology and Biotechnology , vol.87 , pp. 117-126
    • Li, Q.1    Jiang, X.L.2    He, Y.C.3    Li, L.Z.4    Xian, M.5
  • 7
    • 69249127947 scopus 로고    scopus 로고
    • Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass
    • Singh S, Simmons BA, Vogel KP (2009) Visualization of biomass solubilization and cellulose regeneration during ionic liquid pretreatment of switchgrass. Biotechnology and Bioengineering 104: 68-75.
    • (2009) Biotechnology and Bioengineering , vol.104 , pp. 68-75
    • Singh, S.1    Simmons, B.A.2    Vogel, K.P.3
  • 8
    • 80052964615 scopus 로고    scopus 로고
    • Comparison of ionic liquid, acid and alkali pretreatments for sugarcane bagasse enzymatic saccharification
    • Yoon LW, Ngoh GC, Chua ASM, Hashim MA (2011) Comparison of ionic liquid, acid and alkali pretreatments for sugarcane bagasse enzymatic saccharification. Journal of Chemical Technology and Biotechnology 86: 1342-1348.
    • (2011) Journal of Chemical Technology and Biotechnology , vol.86 , pp. 1342-1348
    • Yoon, L.W.1    Ngoh, G.C.2    Chua, A.S.M.3    Hashim, M.A.4
  • 9
    • 80052835619 scopus 로고    scopus 로고
    • Techno-economic analysis of a lignocellulosic ethanol biorefinery with ionic liquid pre-treatment
    • Klein-Markuschamer D, Simmons B, Blanch HW (2011) Techno-economic analysis of a lignocellulosic ethanol biorefinery with ionic liquid pre-treatment. Biofuel Bioprod Bior 5: 562-569.
    • (2011) Biofuel Bioprod Bior , vol.5 , pp. 562-569
    • Klein-Markuschamer, D.1    Simmons, B.2    Blanch, H.W.3
  • 10
    • 75849149895 scopus 로고    scopus 로고
    • Environmental fate and toxicity of ionic liquids: A review
    • Pham TP, Cho CW, Yun YS (2010) Environmental fate and toxicity of ionic liquids: a review. Water Research 44: 352-372.
    • (2010) Water Research , vol.44 , pp. 352-372
    • Pham, T.P.1    Cho, C.W.2    Yun, Y.S.3
  • 11
    • 80053485091 scopus 로고    scopus 로고
    • Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production
    • Ouellet M, Datta S, Dibble DC, Tamrakar PR, Benke PI, et al. (2011) Impact of ionic liquid pretreated plant biomass on Saccharomyces cerevisiae growth and biofuel production. Green Chem: 2743-2749.
    • (2011) Green Chem , pp. 2743-2749
    • Ouellet, M.1    Datta, S.2    Dibble, D.C.3    Tamrakar, P.R.4    Benke, P.I.5
  • 12
    • 77955657002 scopus 로고    scopus 로고
    • Ionic liquids: Applications and future trends in bioreactor technology
    • Quijano G, Couvert A, Amrane A (2010) Ionic liquids: Applications and future trends in bioreactor technology. Bioresource Technology 101: 8923-8930.
    • (2010) Bioresource Technology , vol.101 , pp. 8923-8930
    • Quijano, G.1    Couvert, A.2    Amrane, A.3
  • 14
  • 15
  • 17
    • 77955852574 scopus 로고    scopus 로고
    • A model for improving microbial biofuel production using a synthetic feedback loop
    • Dunlop MJ, Keasling JD, Mukhopadhyay A (2010) A model for improving microbial biofuel production using a synthetic feedback loop. Syst Synth Biol 4: 95-104.
    • (2010) Syst Synth Biol , vol.4 , pp. 95-104
    • Dunlop, M.J.1    Keasling, J.D.2    Mukhopadhyay, A.3
  • 18
    • 73149088132 scopus 로고    scopus 로고
    • Engineering static and dynamic control of synthetic pathways
    • Holtz WJ, Keasling JD (2010) Engineering static and dynamic control of synthetic pathways. Cell 140: 19-23.
    • (2010) Cell , vol.140 , pp. 19-23
    • Holtz, W.J.1    Keasling, J.D.2
  • 19
    • 0035783036 scopus 로고    scopus 로고
    • Transcriptional regulation of multidrug efflux pumps in bacteria
    • Grkovic S, Brown MH, Skurray RA (2001) Transcriptional regulation of multidrug efflux pumps in bacteria. Semin Cell Dev Biol 12: 225-237.
    • (2001) Semin Cell Dev Biol , vol.12 , pp. 225-237
    • Grkovic, S.1    Brown, M.H.2    Skurray, R.A.3
  • 20
    • 84875857527 scopus 로고    scopus 로고
    • Synthetic feedback loop model for increasing microbial biofuel production using a biosensor
    • Harrison ME, Dunlop MJ (2012) Synthetic feedback loop model for increasing microbial biofuel production using a biosensor. Front Microbiol 3: 360.
    • (2012) Front Microbiol , vol.3 , pp. 360
    • Harrison, M.E.1    Dunlop, M.J.2
  • 21
    • 0029041226 scopus 로고
    • Lethal oxidative damage and mutagenesis are generated by iron in delta fur mutants of Escherichia coli: Protective role of superoxide dismutase
    • Touati D, Jacques M, Tardat B, Bouchard L, Despied S (1995) Lethal oxidative damage and mutagenesis are generated by iron in delta fur mutants of Escherichia coli: protective role of superoxide dismutase. J Bacteriol 177: 2305-2314.
    • (1995) J Bacteriol , vol.177 , pp. 2305-2314
    • Touati, D.1    Jacques, M.2    Tardat, B.3    Bouchard, L.4    Despied, S.5
  • 22
    • 0026443939 scopus 로고
    • Functional differences between manganese and iron superoxide dismutases in Escherichia coli K-12
    • Hopkin KA, Papazian MA, Steinman HM (1992) Functional differences between manganese and iron superoxide dismutases in Escherichia coli K-12. J Biol Chem 267: 24253-24258.
    • (1992) J Biol Chem , vol.267 , pp. 24253-24258
    • Hopkin, K.A.1    Papazian, M.A.2    Steinman, H.M.3
  • 23
    • 77956528494 scopus 로고    scopus 로고
    • Aromatic acid metabolites of Escherichia coli K-12 can induce the marRAB operon
    • Chubiz LM, Rao CV (2010) Aromatic acid metabolites of Escherichia coli K-12 can induce the marRAB operon. J Bacteriol 192: 4786-4789.
    • (2010) J Bacteriol , vol.192 , pp. 4786-4789
    • Chubiz, L.M.1    Rao, C.V.2
  • 24
    • 0025830893 scopus 로고
    • Characterization and sequence of the Escherichia coli stress-induced psp operon
    • Brissette JL, Weiner L, Ripmaster TL, Model P (1991) Characterization and sequence of the Escherichia coli stress-induced psp operon. J Mol Biol 220: 35-48. (Pubitemid 121004541)
    • (1991) Journal of Molecular Biology , vol.220 , Issue.1 , pp. 35-48
    • Brissette, J.L.1    Weiner, L.2    Ripmaster, T.L.3    Model, P.4
  • 25
    • 79952363991 scopus 로고    scopus 로고
    • Genetic selection designed to stabilize proteins uncovers a chaperone called Spy
    • Quan S, Koldewey P, Tapley T, Kirsch N, Ruane KM, et al. (2011) Genetic selection designed to stabilize proteins uncovers a chaperone called Spy. Nat Struct Mol Biol 18: 262-269.
    • (2011) Nat Struct Mol Biol , vol.18 , pp. 262-269
    • Quan, S.1    Koldewey, P.2    Tapley, T.3    Kirsch, N.4    Ruane, K.M.5
  • 27
    • 40649118187 scopus 로고    scopus 로고
    • Structural insight on the mechanism of regulation of the MarR family of proteins: High-resolution crystal structure of a transcriptional repressor from Methanobacterium thermoautotrophicum
    • Saridakis V, Shahinas D, Xu X, Christendat D (2008) Structural insight on the mechanism of regulation of the MarR family of proteins: high-resolution crystal structure of a transcriptional repressor from Methanobacterium thermoautotrophicum. J Mol Biol 377: 655-667.
    • (2008) J Mol Biol , vol.377 , pp. 655-667
    • Saridakis, V.1    Shahinas, D.2    Xu, X.3    Christendat, D.4
  • 28
    • 31344443334 scopus 로고    scopus 로고
    • Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins
    • Wilkinson SP, Grove A (2006) Ligand-responsive transcriptional regulation by members of the MarR family of winged helix proteins. Curr Issues Mol Biol 8: 51-62. (Pubitemid 43141390)
    • (2006) Current Issues in Molecular Biology , vol.8 , Issue.1 , pp. 51-62
    • Wilkinson, S.P.1    Grove, A.2
  • 29
    • 0030983818 scopus 로고    scopus 로고
    • Role of the acrAB locus in organic solvent tolerance mediated by expression of marA, soxS, or robA in Escherichia coli
    • White DG, Goldman JD, Demple B, Levy SB (1997) Role of the acrAB locus in organic solvent tolerance mediated by expression of marA, soxS, or robA in Escherichia coli. J Bacteriol 179: 6122-6126. (Pubitemid 27419038)
    • (1997) Journal of Bacteriology , vol.179 , Issue.19 , pp. 6122-6126
    • White, D.G.1    Goldman, J.D.2    Demple, B.3    Levy, S.B.4
  • 30
    • 0034119459 scopus 로고    scopus 로고
    • Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA
    • DOI 10.1128/JB.182.12.3467-3474.2000
    • Barbosa TM, Levy SB (2000) Differential expression of over 60 chromosomal genes in Escherichia coli by constitutive expression of MarA. J Bacteriol 182: 3467-3474. (Pubitemid 30341610)
    • (2000) Journal of Bacteriology , vol.182 , Issue.12 , pp. 3467-3474
    • Barbosa, T.M.1    Levy, S.B.2
  • 31
    • 0036016825 scopus 로고    scopus 로고
    • Genomics of the marA/soxS/rob regulon of Escherichia coli: Identification of directly activated promoters by application of molecular genetics and informatics to microarray data
    • DOI 10.1046/j.1365-2958.2002.02985.x
    • Martin RG, Rosner JL (2002) Genomics of the marA/soxS/rob regulon of Escherichia coli: identification of directly activated promoters by application of molecular genetics and informatics to microarray data. Mol Microbiol 44: 1611-1624. (Pubitemid 34639437)
    • (2002) Molecular Microbiology , vol.44 , Issue.6 , pp. 1611-1624
    • Martin, R.G.1    Rosner, J.L.2
  • 32
    • 79251573217 scopus 로고    scopus 로고
    • Cryptic prophages help bacteria cope with adverse environments
    • Wang X, Kim Y, Ma Q, Hong SH, Pokusaeva K, et al. (2010) Cryptic prophages help bacteria cope with adverse environments. Nat Commun 1: 147.
    • (2010) Nat Commun , vol.1 , pp. 147
    • Wang, X.1    Kim, Y.2    Ma, Q.3    Hong, S.H.4    Pokusaeva, K.5
  • 34
    • 79952108014 scopus 로고    scopus 로고
    • Targeted proteomics for metabolic pathway optimization: Application to terpene production
    • Redding-Johanson AM, Batth TS, Chan R, Krupa R, Szmidt HL, et al. (2011) Targeted proteomics for metabolic pathway optimization: application to terpene production. Metab Eng 13: 194-203.
    • (2011) Metab Eng , vol.13 , pp. 194-203
    • Redding-Johanson, A.M.1    Batth, T.S.2    Chan, R.3    Krupa, R.4    Szmidt, H.L.5
  • 36
    • 0343183325 scopus 로고    scopus 로고
    • Fermentation of lignocellulosic hydrolysates. I: Inhibition and detoxification
    • DOI 10.1016/S0960-8524(99)00160-1, PII S0960852499001601
    • Palmqvist E, Hahn-Hagerdal B (2000) Fermentation of lignocellulosic hydrolysates. I: inhibition and detoxification. Bioresource Technology 74: 17-24. (Pubitemid 30190274)
    • (2000) Bioresource Technology , vol.74 , Issue.1 , pp. 17-24
    • Palmqvist, E.1    Hahn-Hagerdal, B.2
  • 37
    • 0343618697 scopus 로고    scopus 로고
    • Fermentation of lignocellulosic hydrolysates. II: Inhibitors and mechanisms of inhibition
    • DOI 10.1016/S0960-8524(99)00161-3, PII S0960852499001613
    • Palmqvist E, Hahn-Hagerdal B (2000) Fermentation of lignocellulosic hydrolysates. II: inhibitors and mechanisms of inhibition. Bioresource Technology 74: 25-33. (Pubitemid 30190275)
    • (2000) Bioresource Technology , vol.74 , Issue.1 , pp. 25-33
    • Palmqvist, E.1    Hahn-Hagerdal, B.2
  • 38
    • 68149124672 scopus 로고    scopus 로고
    • Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates
    • Pienkos PT, Zhang M (2009) Role of pretreatment and conditioning processes on toxicity of lignocellulosic biomass hydrolysates. Cellulose 16: 743-762.
    • (2009) Cellulose , vol.16 , pp. 743-762
    • Pienkos, P.T.1    Zhang, M.2
  • 41
    • 68149136937 scopus 로고    scopus 로고
    • Circular polymerase extension cloning of complex gene libraries and pathways
    • Quan J, Tian J (2009) Circular polymerase extension cloning of complex gene libraries and pathways. Plos One 4: e6441.
    • (2009) Plos One , vol.4
    • Quan, J.1    Tian, J.2
  • 43
    • 79955009094 scopus 로고    scopus 로고
    • Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR
    • Zhou K, Zhou L, Lim Q, Zou R, Stephanopoulos G, et al. (2011) Novel reference genes for quantifying transcriptional responses of Escherichia coli to protein overexpression by quantitative PCR. BMC Mol Biol 12: 18.
    • (2011) BMC Mol Biol , vol.12 , pp. 18
    • Zhou, K.1    Zhou, L.2    Lim, Q.3    Zou, R.4    Stephanopoulos, G.5
  • 44
    • 0035710746 scopus 로고    scopus 로고
    • -DeltaDeltaCT method
    • DOI 10.1006/meth.2001.1262
    • Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative PCR and the 2(T)(-Delta Delta C) method. Methods 25: 402-408. (Pubitemid 34164012)
    • (2001) Methods , vol.25 , Issue.4 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 45
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
    • MacLean B, Tomazela DM, Shulman N, Chambers M, Finney GL, et al. (2010) Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics 26: 966-968.
    • (2010) Bioinformatics , vol.26 , pp. 966-968
    • MacLean, B.1    Tomazela, D.M.2    Shulman, N.3    Chambers, M.4    Finney, G.L.5
  • 46
    • 0001639179 scopus 로고
    • The Growth of Bacterial Cultures
    • Monod J (1949) The Growth of Bacterial Cultures. Annual Review of Microbiology 3: 371-394.
    • (1949) Annual Review of Microbiology , vol.3 , pp. 371-394
    • Monod, J.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.