-
1
-
-
84860370125
-
Superfamily 2 helicases
-
Byrd, A. K., and Raney, K. D. (2012) Superfamily 2 helicases. Front. Biosci. 17, 2070-2088
-
(2012)
Front. Biosci.
, vol.17
, pp. 2070-2088
-
-
Byrd, A.K.1
Raney, K.D.2
-
2
-
-
84873632859
-
Structure and Mechanisms of SF1 DNA Helicases
-
Raney, K. D., Byrd, A. K., and Aarattuthodiyil, S. (2013) Structure and Mechanisms of SF1 DNA Helicases. Adv. Exp. Med. Biol. 767, 17-46
-
(2013)
Adv. Exp. Med. Biol.
, vol.767
, pp. 17-46
-
-
Raney, K.D.1
Byrd, A.K.2
Aarattuthodiyil, S.3
-
3
-
-
84883226891
-
Superfamily 1 helicases
-
Gilhooly, N. S., Gwynn, E. J., and Dillingham, M. S. (2013) Superfamily 1 helicases. Front. Biosci. 5, 206-216
-
(2013)
Front. Biosci.
, vol.5
, pp. 206-216
-
-
Gilhooly, N.S.1
Gwynn, E.J.2
Dillingham, M.S.3
-
4
-
-
84881145018
-
DNA helicases involved in DNA repair and their roles in cancer
-
Brosh, R. M., Jr. (2013) DNA helicases involved in DNA repair and their roles in cancer. Nat. Rev. Cancer 13, 542-558
-
(2013)
Nat. Rev. Cancer
, vol.13
, pp. 542-558
-
-
Brosh, R.M.1
-
5
-
-
84867744921
-
DNA secondary structures: Stability and function of G-quadruplex structures
-
Bochman, M. L., Paeschke, K., and Zakian, V. A. (2012) DNA secondary structures: stability and function of G-quadruplex structures. Nat. Rev. Genet. 13, 770-780
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 770-780
-
-
Bochman, M.L.1
Paeschke, K.2
Zakian, V.A.3
-
6
-
-
36148968944
-
A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription
-
Belotserkovskii, B. P., De Silva, E., Tornaletti, S., Wang, G., Vasquez, K. M., and Hanawalt, P. C. (2007) A triplex-forming sequence from the human c-MYC promoter interferes with DNA transcription. J. Biol. Chem. 282, 32433-32441
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 32433-32441
-
-
Belotserkovskii, B.P.1
De Silva, E.2
Tornaletti, S.3
Wang, G.4
Vasquez, K.M.5
Hanawalt, P.C.6
-
7
-
-
33644543741
-
Z-DNA-forming sequences generate large-scale deletions in mammalian cells
-
Wang, G., Christensen, L. A., and Vasquez, K. M. (2006) Z-DNA-forming sequences generate large-scale deletions in mammalian cells. Proc. Natl. Acad. Sci. U.S.A. 103, 2677-2682
-
(2006)
Proc. Natl. Acad. Sci. U.S.A.
, vol.103
, pp. 2677-2682
-
-
Wang, G.1
Christensen, L.A.2
Vasquez, K.M.3
-
8
-
-
59949101230
-
Chromosomal instability mediated by non-B DNA: Cruciform conformation and not DNA sequence is responsible for recurrent translocation in humans
-
Inagaki, H., Ohye, T., Kogo, H., Kato, T., Bolor, H., Taniguchi, M., Shaikh, T. H., Emanuel, B. S., and Kurahashi, H. (2009) Chromosomal instability mediated by non-B DNA: cruciform conformation and not DNA sequence is responsible for recurrent translocation in humans. Genome Res. 19, 191-198
-
(2009)
Genome Res.
, vol.19
, pp. 191-198
-
-
Inagaki, H.1
Ohye, T.2
Kogo, H.3
Kato, T.4
Bolor, H.5
Taniguchi, M.6
Shaikh, T.H.7
Emanuel, B.S.8
Kurahashi, H.9
-
9
-
-
84914691906
-
Grip it and rip it: Structural mechanisms of DNA helicase substrate binding and unwinding
-
Bhattacharyya, B., and Keck, J. L. (2014) Grip it and rip it: structural mechanisms of DNA helicase substrate binding and unwinding. Protein Sci. 23, 1498-1507
-
(2014)
Protein Sci.
, vol.23
, pp. 1498-1507
-
-
Bhattacharyya, B.1
Keck, J.L.2
-
10
-
-
73749085274
-
Non-B DNA structure-induced genetic instability and evolution
-
Zhao, J., Bacolla, A., Wang, G., and Vasquez, K. M. (2010) Non-B DNA structure-induced genetic instability and evolution. Cell. Mol. Life Sci. 67, 43-62
-
(2010)
Cell. Mol. Life Sci.
, vol.67
, pp. 43-62
-
-
Zhao, J.1
Bacolla, A.2
Wang, G.3
Vasquez, K.M.4
-
11
-
-
84891400223
-
Existence and consequences of G-quadruplex structures in DNA
-
Murat, P., and Balasubramanian, S. (2014) Existence and consequences of G-quadruplex structures in DNA. Curr. Opin. Genet. Dev. 25, 22-29
-
(2014)
Curr. Opin. Genet. Dev.
, vol.25
, pp. 22-29
-
-
Murat, P.1
Balasubramanian, S.2
-
12
-
-
0035902465
-
In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei
-
Schaffitzel, C., Berger, I., Postberg, J., Hanes, J., Lipps, H. J., and Plückthun, A. (2001) In vitro generated antibodies specific for telomeric guanine-quadruplex DNA react with Stylonychia lemnae macronuclei. Proc. Natl. Acad. Sci. U.S.A. 98, 8572-8577
-
(2001)
Proc. Natl. Acad. Sci. U.S.A.
, vol.98
, pp. 8572-8577
-
-
Schaffitzel, C.1
Berger, I.2
Postberg, J.3
Hanes, J.4
Lipps, H.J.5
Plückthun, A.6
-
13
-
-
84875464903
-
Quantitative visualization of DNA G-quadruplex structures in human cells
-
Biffi, G., Tannahill, D., McCafferty, J., and Balasubramanian, S. (2013) Quantitative visualization of DNA G-quadruplex structures in human cells. Nat. Chem. 5, 182-186
-
(2013)
Nat. Chem.
, vol.5
, pp. 182-186
-
-
Biffi, G.1
Tannahill, D.2
McCafferty, J.3
Balasubramanian, S.4
-
14
-
-
84893303932
-
Detection of G-quadruplex DNA in mammalian cells
-
Henderson, A., Wu, Y., Huang, Y. C., Chavez, E. A., Platt, J., Johnson, F. B., Brosh, R. M., Jr., Sen, D., and Lansdorp, P. M. (2014) Detection of G-quadruplex DNA in mammalian cells. Nucleic Acids Res. 42, 860-869
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 860-869
-
-
Henderson, A.1
Wu, Y.2
Huang, Y.C.3
Chavez, E.A.4
Platt, J.5
Johnson, F.B.6
Brosh, R.M.7
Sen, D.8
Lansdorp, P.M.9
-
15
-
-
78649511027
-
Small-molecule-mediated G-quadruplex isolation from human cells
-
Müller, S., Kumari, S., Rodriguez, R., and Balasubramanian, S. (2010) Small-molecule-mediated G-quadruplex isolation from human cells. Nat. Chem. 2, 1095-1098
-
(2010)
Nat. Chem.
, vol.2
, pp. 1095-1098
-
-
Müller, S.1
Kumari, S.2
Rodriguez, R.3
Balasubramanian, S.4
-
16
-
-
79957556530
-
DNA replication through G-quadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicase
-
Paeschke, K., Capra, J. A., and Zakian, V. A. (2011) DNA replication through G-quadruplex motifs is promoted by the Saccharomyces cerevisiae Pif1 DNA helicase. Cell 145, 678-691
-
(2011)
Cell
, vol.145
, pp. 678-691
-
-
Paeschke, K.1
Capra, J.A.2
Zakian, V.A.3
-
17
-
-
67149126812
-
The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo
-
Ribeyre, C., Lopes, J., Boulé, J. B., Piazza, A., Guédin, A., Zakian, V. A., Mergny, J. L., and Nicolas, A. (2009) The yeast Pif1 helicase prevents genomic instability caused by G-quadruplex-forming CEB1 sequences in vivo. PLoS Genet. 5, e1000475
-
(2009)
PLoS Genet.
, vol.5
, pp. e1000475
-
-
Ribeyre, C.1
Lopes, J.2
Boulé, J.B.3
Piazza, A.4
Guédin, A.5
Zakian, V.A.6
Mergny, J.L.7
Nicolas, A.8
-
18
-
-
84878122437
-
Pif1 family helicases suppress genome instability at G-quadruplex motifs
-
Paeschke, K., Bochman, M. L., Garcia, P. D., Cejka, P., Friedman, K. L., Kowalczykowski, S. C., and Zakian, V. A. (2013) Pif1 family helicases suppress genome instability at G-quadruplex motifs. Nature 497, 458-462
-
(2013)
Nature
, vol.497
, pp. 458-462
-
-
Paeschke, K.1
Bochman, M.L.2
Garcia, P.D.3
Cejka, P.4
Friedman, K.L.5
Kowalczykowski, S.C.6
Zakian, V.A.7
-
19
-
-
84899887504
-
Periodic DNA patrolling underlies diverse functions of Pif1 on R-loops and G-rich DNA
-
Zhou, R., Zhang, J., Bochman, M. L., Zakian, V. A., and Ha, T. (2014) Periodic DNA patrolling underlies diverse functions of Pif1 on R-loops and G-rich DNA. Elife 3, e02190
-
(2014)
Elife
, vol.3
, pp. e02190
-
-
Zhou, R.1
Zhang, J.2
Bochman, M.L.3
Zakian, V.A.4
Ha, T.5
-
20
-
-
84897029094
-
G quadruplexes are genomewide targets of transcriptional helicases XPB and XPD
-
Gray, L. T., Vallur, A. C., Eddy, J., and Maizels, N. (2014) G quadruplexes are genomewide targets of transcriptional helicases XPB and XPD. Nat. Chem. Biol. 10, 313-318
-
(2014)
Nat. Chem. Biol.
, vol.10
, pp. 313-318
-
-
Gray, L.T.1
Vallur, A.C.2
Eddy, J.3
Maizels, N.4
-
21
-
-
78649980436
-
Epigenetic instability due to defective replication of structured DNA
-
Sarkies, P., Reams, C., Simpson, L. J., and Sale, J. E. (2010) Epigenetic instability due to defective replication of structured DNA. Mol. Cell 40, 703-713
-
(2010)
Mol. Cell
, vol.40
, pp. 703-713
-
-
Sarkies, P.1
Reams, C.2
Simpson, L.J.3
Sale, J.E.4
-
22
-
-
33846928449
-
G-quadruplexes in promoters throughout the human genome
-
Huppert, J. L., and Balasubramanian, S. (2007) G-quadruplexes in promoters throughout the human genome. Nucleic Acids Res. 35, 406-413
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 406-413
-
-
Huppert, J.L.1
Balasubramanian, S.2
-
23
-
-
20144369806
-
Highly prevalent putative quadruplex sequence motifs in human DNA
-
Todd, A. K., Johnston, M., and Neidle, S. (2005) Highly prevalent putative quadruplex sequence motifs in human DNA. Nucleic Acids Res. 33, 2901-2907
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 2901-2907
-
-
Todd, A.K.1
Johnston, M.2
Neidle, S.3
-
24
-
-
78049298053
-
G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae
-
Capra, J. A., Paeschke, K., Singh, M., and Zakian, V. A. (2010) G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae. PLoS Comput. Biol. 6, e1000861
-
(2010)
PLoS Comput. Biol.
, vol.6
, pp. e1000861
-
-
Capra, J.A.1
Paeschke, K.2
Singh, M.3
Zakian, V.A.4
-
25
-
-
84890411617
-
Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals
-
Xiao, S., Zhang, J. Y., Zheng, K. W., Hao, Y. H., and Tan, Z. (2013) Bioinformatic analysis reveals an evolutional selection for DNA:RNA hybrid G-quadruplex structures as putative transcription regulatory elements in warm-blooded animals. Nucleic Acids Res. 41, 10379-10390
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 10379-10390
-
-
Xiao, S.1
Zhang, J.Y.2
Zheng, K.W.3
Hao, Y.H.4
Tan, Z.5
-
26
-
-
0023788886
-
Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis
-
Sen, D., and Gilbert, W. (1988) Formation of parallel four-stranded complexes by guanine-rich motifs in DNA and its implications for meiosis. Nature 334, 364-366
-
(1988)
Nature
, vol.334
, pp. 364-366
-
-
Sen, D.1
Gilbert, W.2
-
27
-
-
44949114282
-
FANCJ helicase defective in Fanconia anemia and breast cancer unwinds G-quadruplex DNA to defend genomic stability
-
Wu, Y., Shin-ya, K., and Brosh, R. M., Jr. (2008) FANCJ helicase defective in Fanconia anemia and breast cancer unwinds G-quadruplex DNA to defend genomic stability. Mol. Cell. Biol. 28, 4116-4128
-
(2008)
Mol. Cell. Biol.
, vol.28
, pp. 4116-4128
-
-
Wu, Y.1
Shin-ya, K.2
Brosh, R.M.3
-
28
-
-
61349135721
-
FANCJ is a structure-specific DNA helicase associated with the maintenance of genomic G/C tracts
-
London, T. B., Barber, L. J., Mosedale, G., Kelly, G. P., Balasubramanian, S., Hickson, I. D., Boulton, S. J., and Hiom, K. (2008) FANCJ is a structure-specific DNA helicase associated with the maintenance of genomic G/C tracts. J. Biol. Chem. 283, 36132-36139
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 36132-36139
-
-
London, T.B.1
Barber, L.J.2
Mosedale, G.3
Kelly, G.P.4
Balasubramanian, S.5
Hickson, I.D.6
Boulton, S.J.7
Hiom, K.8
-
29
-
-
80053611613
-
G-quadruplex-induced instability during leading-strand replication
-
Lopes, J., Piazza, A., Bermejo, R., Kriegsman, B., Colosio, A., Teulade-Fichou, M. P., Foiani, M., and Nicolas, A. (2011) G-quadruplex-induced instability during leading-strand replication. EMBO J. 30, 4033-4046
-
(2011)
EMBO J.
, vol.30
, pp. 4033-4046
-
-
Lopes, J.1
Piazza, A.2
Bermejo, R.3
Kriegsman, B.4
Colosio, A.5
Teulade-Fichou, M.P.6
Foiani, M.7
Nicolas, A.8
-
30
-
-
0035393720
-
The Bloom's and Werner's syndrome proteins are DNA structure-specific helicases
-
Mohaghegh, P., Karow, J. K., Brosh, R. M., Jr., Bohr, V. A., and Hickson, I. D. (2001) The Bloom's and Werner's syndrome proteins are DNA structure-specific helicases. Nucleic Acids Res. 29, 2843-2849
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 2843-2849
-
-
Mohaghegh, P.1
Karow, J.K.2
Brosh, R.M.3
Bohr, V.A.4
Hickson, I.D.5
-
31
-
-
84884771159
-
Specialization among iron-sulfur cluster helicases to resolve G-quadruplex DNA structures that threaten genomic stability
-
Bharti, S. K., Sommers, J. A., George, F., Kuper, J., Hamon, F., Shin-ya, K., Teulade-Fichou, M. P., Kisker, C., and Brosh, R. M., Jr. (2013) Specialization among iron-sulfur cluster helicases to resolve G-quadruplex DNA structures that threaten genomic stability. J. Biol. Chem. 288, 28217-28229
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 28217-28229
-
-
Bharti, S.K.1
Sommers, J.A.2
George, F.3
Kuper, J.4
Hamon, F.5
Shin-ya, K.6
Teulade-Fichou, M.P.7
Kisker, C.8
Brosh, R.M.9
-
32
-
-
58049200140
-
G4 resolvase 1 binds both DNA and RNA tetramolecular quadruplex with high affinity and is the major source of tetramolecular quadruplex G4-DNA and G4-RNA resolving activity in HeLa cell lysates
-
Creacy, S. D., Routh, E. D., Iwamoto, F., Nagamine, Y., Akman, S. A., and Vaughn, J. P. (2008) G4 resolvase 1 binds both DNA and RNA tetramolecular quadruplex with high affinity and is the major source of tetramolecular quadruplex G4-DNA and G4-RNA resolving activity in HeLa cell lysates. J. Biol. Chem. 283, 34626-34634
-
(2008)
J. Biol. Chem.
, vol.283
, pp. 34626-34634
-
-
Creacy, S.D.1
Routh, E.D.2
Iwamoto, F.3
Nagamine, Y.4
Akman, S.A.5
Vaughn, J.P.6
-
33
-
-
80052445273
-
G4 resolvase 1 tightly binds and unwinds unimolecular G4-DNA
-
Giri, B., Smaldino, P. J., Thys, R. G., Creacy, S. D., Routh, E. D., Hantgan, R. R., Lattmann, S., Nagamine, Y., Akman, S. A., and Vaughn, J. P. (2011) G4 resolvase 1 tightly binds and unwinds unimolecular G4-DNA. Nucleic Acids Res. 39, 7161-7178
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 7161-7178
-
-
Giri, B.1
Smaldino, P.J.2
Thys, R.G.3
Creacy, S.D.4
Routh, E.D.5
Hantgan, R.R.6
Lattmann, S.7
Nagamine, Y.8
Akman, S.A.9
Vaughn, J.P.10
-
34
-
-
84890288582
-
Binding of G-quadruplexes to the N-terminal recognition domain of the RNA helicase associated with AU-rich element (RHAU)
-
Meier, M., Patel, T. R., Booy, E. P., Marushchak, O., Okun, N., Deo, S., Howard, R., McEleney, K., Harding, S. E., Stetefeld, J., and McKenna, S. A. (2013) Binding of G-quadruplexes to the N-terminal recognition domain of the RNA helicase associated with AU-rich element (RHAU). J. Biol. Chem. 288, 35014-35027
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 35014-35027
-
-
Meier, M.1
Patel, T.R.2
Booy, E.P.3
Marushchak, O.4
Okun, N.5
Deo, S.6
Howard, R.7
McEleney, K.8
Harding, S.E.9
Stetefeld, J.10
McKenna, S.A.11
-
35
-
-
13644267721
-
Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization
-
Ambrus, A., Chen, D., Dai, J., Jones, R. A., and Yang, D. (2005) Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization. Biochemistry 44, 2048-2058
-
(2005)
Biochemistry
, vol.44
, pp. 2048-2058
-
-
Ambrus, A.1
Chen, D.2
Dai, J.3
Jones, R.A.4
Yang, D.5
-
36
-
-
47849105417
-
Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions
-
Qin, Y., and Hurley, L. H. (2008) Structures, folding patterns, and functions of intramolecular DNA G-quadruplexes found in eukaryotic promoter regions. Biochimie 90, 1149-1171
-
(2008)
Biochimie
, vol.90
, pp. 1149-1171
-
-
Qin, Y.1
Hurley, L.H.2
-
37
-
-
0035827578
-
Evidence for a functional monomeric form of the bacteriophage T4 Dda helicase. Dda does not form stable oligomeric structures
-
Morris, P. D., Tackett, A. J., Babb, K., Nanduri, B., Chick, C., Scott, J., and Raney, K. D. (2001) Evidence for a functional monomeric form of the bacteriophage T4 Dda helicase. Dda does not form stable oligomeric structures. J. Biol. Chem. 276, 19691-19698
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19691-19698
-
-
Morris, P.D.1
Tackett, A.J.2
Babb, K.3
Nanduri, B.4
Chick, C.5
Scott, J.6
Raney, K.D.7
-
38
-
-
0029791842
-
Preparation and use of synthetic oligoribonucleotides as tools for study of viral polymerases
-
Carroll, S. S., Benseler, F., and Olsen, D. B. (1996) Preparation and use of synthetic oligoribonucleotides as tools for study of viral polymerases. Methods Enzymol. 275, 365-382
-
(1996)
Methods Enzymol.
, vol.275
, pp. 365-382
-
-
Carroll, S.S.1
Benseler, F.2
Olsen, D.B.3
-
39
-
-
2542432027
-
Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA
-
Byrd, A. K., and Raney, K. D. (2004) Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA. Nat. Struct. Mol. Biol. 11, 531-538
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 531-538
-
-
Byrd, A.K.1
Raney, K.D.2
-
40
-
-
33745216451
-
Analysis of the DNA unwinding activity of RecQ family helicases
-
Bachrati, C. Z., and Hickson, I. D. (2006) Analysis of the DNA unwinding activity of RecQ family helicases. Methods Enzymol. 409, 86-100
-
(2006)
Methods Enzymol.
, vol.409
, pp. 86-100
-
-
Bachrati, C.Z.1
Hickson, I.D.2
-
41
-
-
84875465738
-
Physical and functional interaction between yeast Pif1 helicase and Rim1 single-stranded DNA binding protein
-
Ramanagoudr-Bhojappa, R., Blair, L. P., Tackett, A. J., and Raney, K. D. (2013) Physical and functional interaction between yeast Pif1 helicase and Rim1 single-stranded DNA binding protein. Nucleic Acids Res. 41, 1029-1046
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 1029-1046
-
-
Ramanagoudr-Bhojappa, R.1
Blair, L.P.2
Tackett, A.J.3
Raney, K.D.4
-
42
-
-
0031031958
-
Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase
-
Ali, J. A., and Lohman, T. M. (1997) Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase. Science 275, 377-380
-
(1997)
Science
, vol.275
, pp. 377-380
-
-
Ali, J.A.1
Lohman, T.M.2
-
43
-
-
0033527761
-
An oligomeric form of E. coli UvrD is required for optimal helicase activity
-
Ali, J. A., Maluf, N. K., and Lohman, T. M. (1999) An oligomeric form of E. coli UvrD is required for optimal helicase activity. J. Mol. Biol. 293, 815-834
-
(1999)
J. Mol. Biol.
, vol.293
, pp. 815-834
-
-
Ali, J.A.1
Maluf, N.K.2
Lohman, T.M.3
-
44
-
-
84878408758
-
Yeast Pif1 helicase exhibits a one-base-pair stepping mechanism for unwinding duplex DNA
-
Ramanagoudr-Bhojappa, R., Chib, S., Byrd, A. K., Aarattuthodiyil, S., Pandey, M., Patel, S. S., and Raney, K. D. (2013) Yeast Pif1 helicase exhibits a one-base-pair stepping mechanism for unwinding duplex DNA. J. Biol. Chem. 288, 16185-16195
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 16185-16195
-
-
Ramanagoudr-Bhojappa, R.1
Chib, S.2
Byrd, A.K.3
Aarattuthodiyil, S.4
Pandey, M.5
Patel, S.S.6
Raney, K.D.7
-
45
-
-
33644793170
-
Intermediates revealed in the kinetic mechanism for DNA unwinding by a monomeric helicase
-
Eoff, R. L., and Raney, K. D. (2006) Intermediates revealed in the kinetic mechanism for DNA unwinding by a monomeric helicase. Nat. Struct. Mol. Biol. 13, 242-249
-
(2006)
Nat. Struct. Mol. Biol.
, vol.13
, pp. 242-249
-
-
Eoff, R.L.1
Raney, K.D.2
-
46
-
-
0027520190
-
PIF1 DNA helicase from Saccharomyces cerevisiae. Biochemical characterization of the enzyme
-
Lahaye, A., Leterme, S., and Foury, F. (1993) PIF1 DNA helicase from Saccharomyces cerevisiae. Biochemical characterization of the enzyme. J. Biol. Chem. 268, 26155-26161
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 26155-26161
-
-
Lahaye, A.1
Leterme, S.2
Foury, F.3
-
47
-
-
34848908787
-
The yeast Pif1p DNA helicase preferentially unwinds RNA DNA substrates
-
Boulé, J. B., and Zakian, V. A. (2007) The yeast Pif1p DNA helicase preferentially unwinds RNA DNA substrates. Nucleic Acids Res. 35, 5809-5818
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. 5809-5818
-
-
Boulé, J.B.1
Zakian, V.A.2
-
48
-
-
84877307215
-
Translocation of Saccharomyces cerevisiae Pif1 helicase monomers on single-stranded DNA
-
Galletto, R., and Tomko, E. J. (2013) Translocation of Saccharomyces cerevisiae Pif1 helicase monomers on single-stranded DNA. Nucleic Acids Res. 41, 4613-4627
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 4613-4627
-
-
Galletto, R.1
Tomko, E.J.2
-
49
-
-
0027918585
-
Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex
-
Wang, Y., and Patel, D. J. (1993) Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. Structure 1, 263-282
-
(1993)
Structure
, vol.1
, pp. 263-282
-
-
Wang, Y.1
Patel, D.J.2
-
50
-
-
0037142071
-
Crystal structure of parallel quadruplexes from human telomeric DNA
-
Parkinson, G. N., Lee, M. P., and Neidle, S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA. Nature 417, 876-880
-
(2002)
Nature
, vol.417
, pp. 876-880
-
-
Parkinson, G.N.1
Lee, M.P.2
Neidle, S.3
-
51
-
-
33646943863
-
Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution
-
Ambrus, A., Chen, D., Dai, J., Bialis, T., Jones, R. A., and Yang, D. (2006) Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/antiparallel strands in potassium solution. Nucleic Acids Res. 34, 2723-2735
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 2723-2735
-
-
Ambrus, A.1
Chen, D.2
Dai, J.3
Bialis, T.4
Jones, R.A.5
Yang, D.6
-
52
-
-
23344442222
-
Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: Application to G-quadruplex/duplex competition in human c-myc promoter
-
Halder, K., and Chowdhury, S. (2005) Kinetic resolution of bimolecular hybridization versus intramolecular folding in nucleic acids by surface plasmon resonance: application to G-quadruplex/duplex competition in human c-myc promoter. Nucleic Acids Res. 33, 4466-4474
-
(2005)
Nucleic Acids Res.
, vol.33
, pp. 4466-4474
-
-
Halder, K.1
Chowdhury, S.2
-
53
-
-
84898932147
-
Human Rev1 polymerase disrupts G-quadruplex DNA
-
Eddy, S., Ketkar, A., Zafar, M. K., Maddukuri, L., Choi, J. Y., and Eoff, R. L. (2014) Human Rev1 polymerase disrupts G-quadruplex DNA. Nucleic Acids Res. 42, 3272-3285
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 3272-3285
-
-
Eddy, S.1
Ketkar, A.2
Zafar, M.K.3
Maddukuri, L.4
Choi, J.Y.5
Eoff, R.L.6
-
54
-
-
84869478580
-
The kinetics and folding pathways of intramolecular G-quadruplex nucleic acids
-
Zhang, A. Y., and Balasubramanian, S. (2012) The kinetics and folding pathways of intramolecular G-quadruplex nucleic acids. J Am. Chem. Soc. 134, 19297-19308
-
(2012)
J Am. Chem. Soc.
, vol.134
, pp. 19297-19308
-
-
Zhang, A.Y.1
Balasubramanian, S.2
-
55
-
-
84897112570
-
Folding and unfolding pathways of the human telomeric G-quadruplex
-
Gray, R. D., Trent, J. O., and Chaires, J. B. (2014) Folding and unfolding pathways of the human telomeric G-quadruplex. J. Mol. Biol. 426, 1629-1650
-
(2014)
J. Mol. Biol.
, vol.426
, pp. 1629-1650
-
-
Gray, R.D.1
Trent, J.O.2
Chaires, J.B.3
-
56
-
-
84916206261
-
Yeast Pif1 accelerates annealing of complementary DNA strands
-
Ramanagoudr-Bhojappa, R., Byrd, A. K., Dahl, C., and Raney, K. D. (2014) Yeast Pif1 accelerates annealing of complementary DNA strands. Biochemistry 53, 7659-7669
-
(2014)
Biochemistry
, vol.53
, pp. 7659-7669
-
-
Ramanagoudr-Bhojappa, R.1
Byrd, A.K.2
Dahl, C.3
Raney, K.D.4
-
57
-
-
0344304471
-
Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer
-
Ying, L., Green, J. J., Li, H., Klenerman, D., and Balasubramanian, S. (2003) Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer. Proc. Natl. Acad. Sci. U.S.A. 100, 14629-14634
-
(2003)
Proc. Natl. Acad. Sci. U.S.A.
, vol.100
, pp. 14629-14634
-
-
Ying, L.1
Green, J.J.2
Li, H.3
Klenerman, D.4
Balasubramanian, S.5
-
58
-
-
9144271294
-
Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks
-
Singleton, M. R., Dillingham, M. S., Gaudier, M., Kowalczykowski, S. C., and Wigley, D. B. (2004) Crystal structure of RecBCD enzyme reveals a machine for processing DNA breaks. Nature 432, 187-193
-
(2004)
Nature
, vol.432
, pp. 187-193
-
-
Singleton, M.R.1
Dillingham, M.S.2
Gaudier, M.3
Kowalczykowski, S.C.4
Wigley, D.B.5
-
59
-
-
69749114267
-
The ATPase cycle of PcrA helicase and its coupling to translocation on DNA
-
Toseland, C. P., Martinez-Senac, M. M., Slatter, A. F., and Webb, M. R. (2009) The ATPase cycle of PcrA helicase and its coupling to translocation on DNA. J. Mol. Biol. 392, 1020-1032
-
(2009)
J. Mol. Biol.
, vol.392
, pp. 1020-1032
-
-
Toseland, C.P.1
Martinez-Senac, M.M.2
Slatter, A.F.3
Webb, M.R.4
-
60
-
-
3342896727
-
Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase
-
Serebrov, V., and Pyle, A. M. (2004) Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase. Nature 430, 476-480
-
(2004)
Nature
, vol.430
, pp. 476-480
-
-
Serebrov, V.1
Pyle, A.M.2
-
61
-
-
84876397592
-
Mechanical unfolding of human telomere G-quadruplex DNA probed by integrated fluorescence and magnetic tweezers spectroscopy
-
Long, X., Parks, J. W., Bagshaw, C. R., and Stone, M. D. (2013) Mechanical unfolding of human telomere G-quadruplex DNA probed by integrated fluorescence and magnetic tweezers spectroscopy. Nucleic Acids Res. 41, 2746-2755
-
(2013)
Nucleic Acids Res.
, vol.41
, pp. 2746-2755
-
-
Long, X.1
Parks, J.W.2
Bagshaw, C.R.3
Stone, M.D.4
-
62
-
-
0025269255
-
A sodium-potassium switch in the formation of four-stranded G4-DNA
-
Sen, D., and Gilbert, W. (1990) A sodium-potassium switch in the formation of four-stranded G4-DNA. Nature 344, 410-414
-
(1990)
Nature
, vol.344
, pp. 410-414
-
-
Sen, D.1
Gilbert, W.2
-
63
-
-
84870660365
-
Stimulation of gross chromosomal rearrangements by the human CEB1 and CEB25 minisatellites in Saccharomyces cerevisiae depends on G-quadruplexes or Cdc13
-
Piazza, A., Serero, A., Boulé, J. B., Legoix-Né, P., Lopes, J., and Nicolas, A. (2012) Stimulation of gross chromosomal rearrangements by the human CEB1 and CEB25 minisatellites in Saccharomyces cerevisiae depends on G-quadruplexes or Cdc13. PLoS Genet. 8, e1003033
-
(2012)
PLoS Genet.
, vol.8
, pp. e1003033
-
-
Piazza, A.1
Serero, A.2
Boulé, J.B.3
Legoix-Né, P.4
Lopes, J.5
Nicolas, A.6
-
64
-
-
84899748861
-
Structure and conformational dynamics of a stacked dimeric G-quadruplex formed by the human CEB1 minisatellite
-
Adrian, M., Ang, D. J., Lech, C. J., Heddi, B., Nicolas, A., and Phan, A. T. (2014) Structure and conformational dynamics of a stacked dimeric G-quadruplex formed by the human CEB1 minisatellite. J. Am. Chem. Soc. 136, 6297-6305
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 6297-6305
-
-
Adrian, M.1
Ang, D.J.2
Lech, C.J.3
Heddi, B.4
Nicolas, A.5
Phan, A.T.6
-
65
-
-
77957259274
-
DNA binding induces dimerization of Saccharomyces cerevisiae Pif1
-
Barranco-Medina, S., and Galletto, R. (2010) DNA binding induces dimerization of Saccharomyces cerevisiae Pif1. Biochemistry 49, 8445-8454
-
(2010)
Biochemistry
, vol.49
, pp. 8445-8454
-
-
Barranco-Medina, S.1
Galletto, R.2
-
66
-
-
84878150837
-
RPA-mediated unfolding of systematically varying G-quadruplex structures
-
Ray, S., Qureshi, M. H., Malcolm, D. W., Budhathoki, J. B., Celik, U., and Balci, H. (2013) RPA-mediated unfolding of systematically varying G-quadruplex structures. Biophys. J. 104, 2235-2245
-
(2013)
Biophys. J.
, vol.104
, pp. 2235-2245
-
-
Ray, S.1
Qureshi, M.H.2
Malcolm, D.W.3
Budhathoki, J.B.4
Celik, U.5
Balci, H.6
-
67
-
-
58149089147
-
Crystallographic analysis of a sex-specific enhancer element: Sequence-dependent DNA structure, hydration, and dynamics
-
Narayana, N., and Weiss, M. A. (2009) Crystallographic analysis of a sex-specific enhancer element: sequence-dependent DNA structure, hydration, and dynamics. J. Mol. Biol. 385, 469-490
-
(2009)
J. Mol. Biol.
, vol.385
, pp. 469-490
-
-
Narayana, N.1
Weiss, M.A.2
-
68
-
-
0141905867
-
Structure of the parallel-stranded DNA quadruplex d(TTAGGGT)4 containing the human telomeric repeat: Evidence for A-tetrad formation from NMR and molecular dynamics simulations
-
Gavathiotis, E., and Searle, M. S. (2003) Structure of the parallel-stranded DNA quadruplex d(TTAGGGT)4 containing the human telomeric repeat: evidence for A-tetrad formation from NMR and molecular dynamics simulations. Org. Biomol. Chem. 1, 1650-1656
-
(2003)
Org. Biomol. Chem.
, vol.1
, pp. 1650-1656
-
-
Gavathiotis, E.1
Searle, M.S.2
-
69
-
-
34547567980
-
OligoCalc: An online oligonucleotide properties calculator
-
Kibbe, W. A. (2007) OligoCalc: an online oligonucleotide properties calculator. Nucleic Acids Res. 35, W43-W46
-
(2007)
Nucleic Acids Res.
, vol.35
, pp. W43-W46
-
-
Kibbe, W.A.1
-
70
-
-
78049296602
-
Thermodynamic stability and folding kinetics of the major G-quadruplex and its loop isomers formed in the nuclease hypersensitive element in the human c-Myc promoter: Effect of loops and flanking segments on the stability of parallelstranded intramolecular G-quadruplexes
-
Hatzakis, E., Okamoto, K., and Yang, D. (2010) Thermodynamic stability and folding kinetics of the major G-quadruplex and its loop isomers formed in the nuclease hypersensitive element in the human c-Myc promoter: effect of loops and flanking segments on the stability of parallelstranded intramolecular G-quadruplexes. Biochemistry 49, 9152-9160
-
(2010)
Biochemistry
, vol.49
, pp. 9152-9160
-
-
Hatzakis, E.1
Okamoto, K.2
Yang, D.3
|