-
1
-
-
0036880196
-
Helicase mechanisms and the coupling of helicases within macromolecular machines. Part I: Structures and properties of isolated helicases
-
Delagoutte, E. & von Hippel, P.H. Helicase mechanisms and the coupling of helicases within macromolecular machines. Part I: structures and properties of isolated helicases. Q. Rev. Biophys. 35, 431-478 (2002).
-
(2002)
Q. Rev. Biophys.
, vol.35
, pp. 431-478
-
-
Delagoutte, E.1
Von Hippel, P.H.2
-
2
-
-
0037294467
-
Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: Integration of helicases into cellular processes
-
Delagoutte, E. & von Hippel, P.H. Helicase mechanisms and the coupling of helicases within macromolecular machines. Part II: integration of helicases into cellular processes. Q. Rev. Biophys. 36, 1-69 (2003).
-
(2003)
Q. Rev. Biophys.
, vol.36
, pp. 1-69
-
-
Delagoutte, E.1
Von Hippel, P.H.2
-
3
-
-
2542505377
-
Helicases become mechanistically simpler and functionally more complex
-
von Hippel, P.H. Helicases become mechanistically simpler and functionally more complex. Nat. Struct. Mol. Biol. 11, 494-496 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 494-496
-
-
Von Hippel, P.H.1
-
4
-
-
0034635172
-
Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: Measurement of step size and translocation speed
-
Dillingham, M.S., Wigley, D.B. & Webb, M.R. Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed. Biochemistry 39, 205-212 (2000).
-
(2000)
Biochemistry
, vol.39
, pp. 205-212
-
-
Dillingham, M.S.1
Wigley, D.B.2
Webb, M.R.3
-
5
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
-
Velankar, S.S., Soultanas, P., Dillingham, M.S., Subramanya, H.S. & Wigley, D.B. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 97, 75-84 (1999).
-
(1999)
Cell
, vol.97
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
6
-
-
0034682407
-
Translocation step size and mechanism of the RecBC DNA helicase
-
Bianco, P.R. & Kowalczykowski, S.C. Translocation step size and mechanism of the RecBC DNA helicase. Nature 405, 368-372 (2000).
-
(2000)
Nature
, vol.405
, pp. 368-372
-
-
Bianco, P.R.1
Kowalczykowski, S.C.2
-
7
-
-
0026713735
-
Overexpression, purification, sequence analysis, and characterization of the T4 bacteriophage dda DNA helicase
-
Hacker, K.J. & Alberts, B.M. Overexpression, purification, sequence analysis, and characterization of the T4 bacteriophage dda DNA helicase. J. Biol. Chem. 267, 20674-20681 (1992).
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 20674-20681
-
-
Hacker, K.J.1
Alberts, B.M.2
-
8
-
-
0021750329
-
Purification and characterization of the bacteriophage T4 dda protein. A DNA helicase that associates with the viral helix-destabilizing protein
-
Jongeneel, C.V., Formosa, T. & Alberts, B.M. Purification and characterization of the bacteriophage T4 dda protein. A DNA helicase that associates with the viral helix-destabilizing protein. J. Biol. Chem. 259, 12925-12932 (1984).
-
(1984)
J. Biol. Chem.
, vol.259
, pp. 12925-12932
-
-
Jongeneel, C.V.1
Formosa, T.2
Alberts, B.M.3
-
9
-
-
4143084041
-
UvsX recombinase and Dda helicase rescue stalled bacteriophage T4 DNA replication forks in vitro
-
Kadyrov, F.A. & Drake, J.W. UvsX recombinase and Dda helicase rescue stalled bacteriophage T4 DNA replication forks in vitro. J. Biol. Chem. 279, 35735-35740 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 35735-35740
-
-
Kadyrov, F.A.1
Drake, J.W.2
-
10
-
-
2442450532
-
Dual functions of single-stranded DNA-binding protein in helicase loading at the bacteriophage T4 DNA replication fork
-
Ma, Y., Wang, T., Villemain, J.L., Giedroc, D.P. & Morrical, S.W. Dual functions of single-stranded DNA-binding protein in helicase loading at the bacteriophage T4 DNA replication fork. J. Biol. Chem. 279, 19035-19045 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 19035-19045
-
-
Ma, Y.1
Wang, T.2
Villemain, J.L.3
Giedroc, D.P.4
Morrical, S.W.5
-
11
-
-
12144258604
-
Chemically modified DNA substrates implicate the importance of electrostatic interactions for DNA unwinding by Dda helicase
-
Eoff, R.L., Spurling, T.L. & Raney, K.D. Chemically modified DNA substrates implicate the importance of electrostatic interactions for DNA unwinding by Dda helicase. Biochemistry 44, 666-674 (2005).
-
(2005)
Biochemistry
, vol.44
, pp. 666-674
-
-
Eoff, R.L.1
Spurling, T.L.2
Raney, K.D.3
-
12
-
-
0029118974
-
Bacteriophage T4 Dda helicase translocates in a unidirectional fashion on single-stranded DNA
-
Raney, K.D. & Benkovic, S.J. Bacteriophage T4 Dda helicase translocates in a unidirectional fashion on single-stranded DNA. J. Biol. Chem. 270, 22236-22242 (1995).
-
(1995)
J. Biol. Chem.
, vol.270
, pp. 22236-22242
-
-
Raney, K.D.1
Benkovic, S.J.2
-
13
-
-
0035827578
-
Evidence for a functional monomeric form of the bacteriophage T4 DdA helicase. Dda does not form stable oligomeric structures
-
Morris, P.D. et al. Evidence for a functional monomeric form of the bacteriophage T4 DdA helicase. Dda does not form stable oligomeric structures. J. Biol. Chem. 276, 19691-19698 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 19691-19698
-
-
Morris, P.D.1
-
14
-
-
0037069390
-
Pre-steady-state DNA unwinding by bacteriophage T4 Dda helicase reveals a monomeric molecular motor
-
Nanduri, B., Byrd, A.K., Eoff, R.L., Tackett, A.J. & Raney, K.D. Pre-steady-state DNA unwinding by bacteriophage T4 Dda helicase reveals a monomeric molecular motor. Proc. Natl. Acad. Sci. USA 99, 14722-14727 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 14722-14727
-
-
Nanduri, B.1
Byrd, A.K.2
Eoff, R.L.3
Tackett, A.J.4
Raney, K.D.5
-
15
-
-
25444456899
-
Increasing the length of the single-stranded overhang enhances unwinding of duplex DNA by bacteriophage T4 Dda helicase
-
Byrd, A.K. & Raney, K.D. Increasing the length of the single-stranded overhang enhances unwinding of duplex DNA by bacteriophage T4 Dda helicase. Biochemistry 44, 12990-12997 (2005).
-
(2005)
Biochemistry
, vol.44
, pp. 12990-12997
-
-
Byrd, A.K.1
Raney, K.D.2
-
16
-
-
2542468381
-
The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity
-
Levin, M.K., Wang, Y.H. & Patel, S.S. The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity. J. Biol. Chem. 279, 26005-26012 (2004).
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26005-26012
-
-
Levin, M.K.1
Wang, Y.H.2
Patel, S.S.3
-
17
-
-
15444371665
-
Multiple full-length NS3 molecules are required for optimal unwinding of oligonucleotide DNA in vitro
-
Tackett, A.J., Chen, Y., Cameron, C.E. & Raney, K.D. Multiple full-length NS3 molecules are required for optimal unwinding of oligonucleotide DNA in vitro. J. Biol. Chem. 280, 10797-10806 (2005).
-
(2005)
J. Biol. Chem.
, vol.280
, pp. 10797-10806
-
-
Tackett, A.J.1
Chen, Y.2
Cameron, C.E.3
Raney, K.D.4
-
18
-
-
2542432027
-
Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA
-
Byrd, A.K. & Raney, K.D. Protein displacement by an assembly of helicase molecules aligned along single-stranded DNA. Nat. Struct. Mol. Biol. 11, 531-538 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 531-538
-
-
Byrd, A.K.1
Raney, K.D.2
-
19
-
-
0031031958
-
Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase
-
Ali, J.A. & Lohman, T.M. Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase. Science 275, 377-380 (1997).
-
(1997)
Science
, vol.275
, pp. 377-380
-
-
Ali, J.A.1
Lohman, T.M.2
-
20
-
-
0141865611
-
General methods for analysis of sequential "n-step" kinetic mechanisms: Application to single turnover kinetics of helicase-catalyzed DNA unwinding
-
Lucius, A.L., Maluf, N.K., Fischer, C.J. & Lohman, T.M. General methods for analysis of sequential "n-step" kinetic mechanisms: application to single turnover kinetics of helicase-catalyzed DNA unwinding. Biophys. J. 85, 2224-2239 (2003).
-
(2003)
Biophys. J.
, vol.85
, pp. 2224-2239
-
-
Lucius, A.L.1
Maluf, N.K.2
Fischer, C.J.3
Lohman, T.M.4
-
21
-
-
4644261530
-
Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: Quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method
-
Galletto, R., Jezewska, M.J. & Bujalowski, W. Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: quantitative analysis of the rate of the dsDNA unwinding, processivity and kinetic step-size of the Escherichia coli DnaB helicase using rapid quench-flow method. J. Mol. Biol. 343, 83-99 (2004).
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 83-99
-
-
Galletto, R.1
Jezewska, M.J.2
Bujalowski, W.3
-
22
-
-
2442513338
-
The DNA-unwinding mechanism of the ring helicase of bacteriophage T7
-
Jeong, Y.J., Levin, M.K. & Patel, S.S. The DNA-unwinding mechanism of the ring helicase of bacteriophage T7. Proc. Natl. Acad. Sci. USA 101, 7264-7269 (2004).
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7264-7269
-
-
Jeong, Y.J.1
Levin, M.K.2
Patel, S.S.3
-
23
-
-
0036447339
-
DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies
-
Lucius, A.L. et al. DNA unwinding step-size of E. coli RecBCD helicase determined from single turnover chemical quenched-flow kinetic studies. J. Mol. Biol. 324, 409-428 (2002).
-
(2002)
J. Mol. Biol.
, vol.324
, pp. 409-428
-
-
Lucius, A.L.1
-
24
-
-
0037007088
-
Phosphate backbone neutralization increases duplex DNA flexibility: A model for protein binding
-
Okonogi, T.M., Alley, S.C., Harwood, E.A., Hopkins, P.B. & Robinson, B.H. Phosphate backbone neutralization increases duplex DNA flexibility: a model for protein binding. Proc. Natl. Acad. Sci. USA 99, 4156-4160 (2002).
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 4156-4160
-
-
Okonogi, T.M.1
Alley, S.C.2
Harwood, E.A.3
Hopkins, P.B.4
Robinson, B.H.5
-
25
-
-
2542475076
-
Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E. coli RecBCD helicase-catalyzed DNA unwinding
-
Lucius, A.L. & Lohman, T.M. Effects of temperature and ATP on the kinetic mechanism and kinetic step-size for E. coli RecBCD helicase-catalyzed DNA unwinding. J. Mol. Biol. 339, 751-771 (2004).
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 751-771
-
-
Lucius, A.L.1
Lohman, T.M.2
-
26
-
-
2542430217
-
Fluorescence stopped-flow studies of single turnover kinetics of E. coli RecBCD helicase-catalyzed DNA unwinding
-
Lucius, A.L., Jason, W.C. & Lohman, T.M. Fluorescence stopped-flow studies of single turnover kinetics of E. coli RecBCD helicase-catalyzed DNA unwinding. J. Mol. Biol. 339, 731-750 (2004).
-
(2004)
J. Mol. Biol.
, vol.339
, pp. 731-750
-
-
Lucius, A.L.1
Jason, W.C.2
Lohman, T.M.3
-
27
-
-
1542375262
-
Forward and reverse motion of single RecBCD molecules on DNA
-
Perkins, T.T., Li, H.W., Dalal, R.V., Gelles, J. & Block, S.M. Forward and reverse motion of single RecBCD molecules on DNA. Biophys. J. 86, 1640-1648 (2004).
-
(2004)
Biophys. J.
, vol.86
, pp. 1640-1648
-
-
Perkins, T.T.1
Li, H.W.2
Dalal, R.V.3
Gelles, J.4
Block, S.M.5
-
28
-
-
20444440763
-
A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase
-
Levin, M.K., Gurjar, M. & Patel, S.S. A Brownian motor mechanism of translocation and strand separation by hepatitis C virus helicase. Nat. Struct. Mol. Biol. 12, 429-435 (2005).
-
(2005)
Nat. Struct. Mol. Biol.
, vol.12
, pp. 429-435
-
-
Levin, M.K.1
Gurjar, M.2
Patel, S.S.3
-
29
-
-
0035895346
-
Unwinding of unnatural substrates by a DNA helicase
-
Tackett, A.J., Morris, P.D., Dennis, R., Goodwin, T.E. & Raney, K.D. Unwinding of unnatural substrates by a DNA helicase. Biochemistry 40, 543-548 (2001).
-
(2001)
Biochemistry
, vol.40
, pp. 543-548
-
-
Tackett, A.J.1
Morris, P.D.2
Dennis, R.3
Goodwin, T.E.4
Raney, K.D.5
-
30
-
-
4644358568
-
Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: The effect of the 3′ arm and the stability of the dsDNA on the unwinding activity of the Escherichia coli DnaB helicase
-
Galletto, R., Jezewska, M.J. & Bujalowski, W. Unzipping mechanism of the double-stranded DNA unwinding by a hexameric helicase: the effect of the 3′ arm and the stability of the dsDNA on the unwinding activity of the Escherichia coli DnaB helicase. J. Mol. Biol. 343, 101-114 (2004).
-
(2004)
J. Mol. Biol.
, vol.343
, pp. 101-114
-
-
Galletto, R.1
Jezewska, M.J.2
Bujalowski, W.3
-
31
-
-
0035794164
-
Modulation of the herpes simplex virus type-1 UL9 DNA helicase by its cognate single-strand DNA-binding protein, ICP8
-
Arana, M.E., Haq, B., Tanguy Le, G.N. & Boehmer, P.E. Modulation of the herpes simplex virus type-1 UL9 DNA helicase by its cognate single-strand DNA-binding protein, ICP8. J. Biol. Chem. 276, 6840-6845 (2001).
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 6840-6845
-
-
Arana, M.E.1
Haq, B.2
Tanguy Le, G.N.3
Boehmer, P.E.4
-
32
-
-
0034034279
-
Unwinding of a herpes simplex virus type 1 origin of replication (Ori(S)) by a complex of the viral origin binding protein and the single-stranded DNA binding protein
-
He, X. & Lehman, I.R. Unwinding of a herpes simplex virus type 1 origin of replication (Ori(S)) by a complex of the viral origin binding protein and the single-stranded DNA binding protein. J. Virol. 74, 5726-5728 (2000).
-
(2000)
J. Virol.
, vol.74
, pp. 5726-5728
-
-
He, X.1
Lehman, I.R.2
-
33
-
-
0030967646
-
Unwinding of the box I element of a herpes simplex virus type 1 origin by a complex of the viral origin binding protein, single-strand DNA binding protein, and single-stranded DNA
-
Lee, S.S. & Lehman, I. R. Unwinding of the box I element of a herpes simplex virus type 1 origin by a complex of the viral origin binding protein, single-strand DNA binding protein, and single-stranded DNA. Proc. Natl. Acad. Sci. USA 94, 2838-2842 (1997).
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 2838-2842
-
-
Lee, S.S.1
Lehman, I.R.2
-
34
-
-
3342896727
-
Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase
-
Serebrov, V. & Pyle, A.M. Periodic cycles of RNA unwinding and pausing by hepatitis C virus NS3 helicase. Nature 430, 476-480 (2004).
-
(2004)
Nature
, vol.430
, pp. 476-480
-
-
Serebrov, V.1
Pyle, A.M.2
-
35
-
-
2542474124
-
Backbone tracking by the SF2 helicase NPH-II
-
Kawaoka, J., Jankowsky, E. & Pyle, A.M. Backbone tracking by the SF2 helicase NPH-II. Nat. Struct. Mol. Biol. 11, 526-530 (2004).
-
(2004)
Nat. Struct. Mol. Biol.
, vol.11
, pp. 526-530
-
-
Kawaoka, J.1
Jankowsky, E.2
Pyle, A.M.3
|