-
1
-
-
0027182114
-
Helicases: amino acid sequence comparisons and structure-function relationships
-
Gorbalenya A.E., and Koonin E.V. Helicases: amino acid sequence comparisons and structure-function relationships. Curr. Opin. Struct. Biol. 3 (1993) 419-429
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 419-429
-
-
Gorbalenya, A.E.1
Koonin, E.V.2
-
2
-
-
0034737294
-
Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression
-
McGlynn P., and Lloyd R.G. Modulation of RNA polymerase by (p)ppGpp reveals a RecG-dependent mechanism for replication fork progression. Cell 101 (2000) 35-45
-
(2000)
Cell
, vol.101
, pp. 35-45
-
-
McGlynn, P.1
Lloyd, R.G.2
-
3
-
-
34548638261
-
Structure and mechanism of helicases and nucleic acid translocases
-
Singleton M.R., Dillingham M.S., and Wigley D.B. Structure and mechanism of helicases and nucleic acid translocases. Annu. Rev. Biochem. 76 (2007) 23-50
-
(2007)
Annu. Rev. Biochem.
, vol.76
, pp. 23-50
-
-
Singleton, M.R.1
Dillingham, M.S.2
Wigley, D.B.3
-
4
-
-
0024720526
-
Staphylococcus aureus chromosomal mutations that decrease efficiency of Rep utilization in replication of pT181 and related plasmids
-
Iordanescu S., and Bargonetti J. Staphylococcus aureus chromosomal mutations that decrease efficiency of Rep utilization in replication of pT181 and related plasmids. J. Bacteriol. 171 (1989) 4501-4503
-
(1989)
J. Bacteriol.
, vol.171
, pp. 4501-4503
-
-
Iordanescu, S.1
Bargonetti, J.2
-
5
-
-
0033559112
-
Plasmid replication initiator protein RepD increases the processivity of PcrA DNA helicase
-
Soultanas P., Dillingham M.S., Papadopoulos F., Phillips S.E., Thomas C.D., and Wigley D.B. Plasmid replication initiator protein RepD increases the processivity of PcrA DNA helicase. Nucleic Acids Res. 27 (1999) 1421-1428
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 1421-1428
-
-
Soultanas, P.1
Dillingham, M.S.2
Papadopoulos, F.3
Phillips, S.E.4
Thomas, C.D.5
Wigley, D.B.6
-
6
-
-
34848840105
-
Bacillus stearothermophilus PcrA monomer is a single-stranded DNA translocase but not a processive helicase in vitro
-
Niedziela-Majka A., Chesnik M.A., Tomko E.J., and Lohman T.M. Bacillus stearothermophilus PcrA monomer is a single-stranded DNA translocase but not a processive helicase in vitro. J. Biol. Chem. 282 (2007) 27076-27085
-
(2007)
J. Biol. Chem.
, vol.282
, pp. 27076-27085
-
-
Niedziela-Majka, A.1
Chesnik, M.A.2
Tomko, E.J.3
Lohman, T.M.4
-
7
-
-
41849106909
-
Evidence for a functional dimeric form of the PcrA helicase in DNA unwinding
-
Yang Y., Dou S.-X., Ren H., Wang P.-Y., Zhang X.-D., Qian M., et al. Evidence for a functional dimeric form of the PcrA helicase in DNA unwinding. Nucleic Acids Res. 36 (2008) 1976-1989
-
(2008)
Nucleic Acids Res.
, vol.36
, pp. 1976-1989
-
-
Yang, Y.1
Dou, S.-X.2
Ren, H.3
Wang, P.-Y.4
Zhang, X.-D.5
Qian, M.6
-
8
-
-
2542468381
-
The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity
-
Levin M.K., Wang Y.H., and Patel S.S. The functional interaction of the hepatitis C virus helicase molecules is responsible for unwinding processivity. J. Biol. Chem. 279 (2004) 26005-26012
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 26005-26012
-
-
Levin, M.K.1
Wang, Y.H.2
Patel, S.S.3
-
9
-
-
25444456899
-
Increasing the length of the single-stranded overhang enhances unwinding of duplex DNA by bacteriophage T4 Dda helicase
-
Byrd A.K., and Raney K.D. Increasing the length of the single-stranded overhang enhances unwinding of duplex DNA by bacteriophage T4 Dda helicase. Biochemistry 44 (2005) 12990-12997
-
(2005)
Biochemistry
, vol.44
, pp. 12990-12997
-
-
Byrd, A.K.1
Raney, K.D.2
-
10
-
-
0033515425
-
Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism
-
Velankar S.S., Soultanas P., Dillingham M.S., Subramanya H.S., and Wigley D.B. Crystal structures of complexes of PcrA DNA helicase with a DNA substrate indicate an inchworm mechanism. Cell 97 (1999) 75-84
-
(1999)
Cell
, vol.97
, pp. 75-84
-
-
Velankar, S.S.1
Soultanas, P.2
Dillingham, M.S.3
Subramanya, H.S.4
Wigley, D.B.5
-
11
-
-
0033566657
-
Site-directed mutagenesis of motif III in PcrA helicase reveals a role in coupling ATP hydrolysis to strand separation
-
Dillingham M.S., Soultanas P., and Wigley D.B. Site-directed mutagenesis of motif III in PcrA helicase reveals a role in coupling ATP hydrolysis to strand separation. Nucleic Acids Res. 27 (1999) 3310-3317
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 3310-3317
-
-
Dillingham, M.S.1
Soultanas, P.2
Wigley, D.B.3
-
14
-
-
0034679815
-
Uncoupling DNA translocation and helicase activity in pcrA: direct evidence for an active mechanism
-
Soultanas P., Dillingham M., Wiley P., Webb M.R., and Wigley D.B. Uncoupling DNA translocation and helicase activity in pcrA: direct evidence for an active mechanism. EMBO J. 19 (2000) 3799-3810
-
(2000)
EMBO J.
, vol.19
, pp. 3799-3810
-
-
Soultanas, P.1
Dillingham, M.2
Wiley, P.3
Webb, M.R.4
Wigley, D.B.5
-
15
-
-
33845657428
-
UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke
-
Lee J.Y., and Yang W. UvrD helicase unwinds DNA one base pair at a time by a two-part power stroke. Cell 127 (2006) 1349-1360
-
(2006)
Cell
, vol.127
, pp. 1349-1360
-
-
Lee, J.Y.1
Yang, W.2
-
16
-
-
67650066482
-
PcrA helicase tightly couples ATP hydrolysis to unwinding double-stranded DNA, modulated by the replication initiator protein, RepD
-
Slatter A.F., Thomas C.D., and Webb M.R. PcrA helicase tightly couples ATP hydrolysis to unwinding double-stranded DNA, modulated by the replication initiator protein, RepD. Biochemistry 48 (2009) 6326-6334
-
(2009)
Biochemistry
, vol.48
, pp. 6326-6334
-
-
Slatter, A.F.1
Thomas, C.D.2
Webb, M.R.3
-
17
-
-
0034635172
-
Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed
-
Dillingham M.S., Wigley D.B., and Webb M.R. Demonstration of unidirectional single-stranded DNA translocation by PcrA helicase: measurement of step size and translocation speed. Biochemistry 39 (2000) 205-212
-
(2000)
Biochemistry
, vol.39
, pp. 205-212
-
-
Dillingham, M.S.1
Wigley, D.B.2
Webb, M.R.3
-
18
-
-
0037080166
-
Direct measurement of single stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine
-
Dillingham M.S., Wigley D.B., and Webb M.R. Direct measurement of single stranded DNA translocation by PcrA helicase using the fluorescent base analogue 2-aminopurine. Biochemistry 41 (2002) 643-651
-
(2002)
Biochemistry
, vol.41
, pp. 643-651
-
-
Dillingham, M.S.1
Wigley, D.B.2
Webb, M.R.3
-
19
-
-
0032555184
-
Mechanism of inorganic phosphate interaction with phosphate binding protein from Escherichia coli
-
Brune M., Hunter J.L., Howell S.A., Martin S.R., Hazlett T.L., Corrie J.E.T., and Webb M.R. Mechanism of inorganic phosphate interaction with phosphate binding protein from Escherichia coli. Biochemistry 37 (1998) 10370-10380
-
(1998)
Biochemistry
, vol.37
, pp. 10370-10380
-
-
Brune, M.1
Hunter, J.L.2
Howell, S.A.3
Martin, S.R.4
Hazlett, T.L.5
Corrie, J.E.T.6
Webb, M.R.7
-
20
-
-
0025332536
-
Interaction of myosin subfragment 1 with fluorescent ribose-modified nucleotides. A comparison of vanadate trapping and SH1-SH2 cross-linking
-
Cremo C.R., Neuron J.M., and Yount R.G. Interaction of myosin subfragment 1 with fluorescent ribose-modified nucleotides. A comparison of vanadate trapping and SH1-SH2 cross-linking. Biochemistry 29 (1990) 3309-3319
-
(1990)
Biochemistry
, vol.29
, pp. 3309-3319
-
-
Cremo, C.R.1
Neuron, J.M.2
Yount, R.G.3
-
21
-
-
0025214478
-
In vitro studies of the initiation of Staphylococcal plasmid replication. Specificity of RepD for its origin (oriD) and characterization of the RepD-ori tyrosyl ester intermediate
-
Thomas C.D., Balson D.F., and Shaw W.V. In vitro studies of the initiation of Staphylococcal plasmid replication. Specificity of RepD for its origin (oriD) and characterization of the RepD-ori tyrosyl ester intermediate. J. Biol. Chem. 265 (1990) 5519-5530
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 5519-5530
-
-
Thomas, C.D.1
Balson, D.F.2
Shaw, W.V.3
-
22
-
-
29344449133
-
Mechanism of translocation and kinetics of DNA unwinding by the helicase RecG
-
Martinez-Senac M.M., and Webb M.R. Mechanism of translocation and kinetics of DNA unwinding by the helicase RecG. Biochemistry 44 (2005) 16967-16976
-
(2005)
Biochemistry
, vol.44
, pp. 16967-16976
-
-
Martinez-Senac, M.M.1
Webb, M.R.2
-
23
-
-
0021964341
-
Oxygen exchange between phosphate and water accompanies calcium-regulated ATPase activity of skinned fibers from rabbit skeletal muscle
-
Hibberd M.G., Webb M.R., Goldman Y.E., and Trentham D.R. Oxygen exchange between phosphate and water accompanies calcium-regulated ATPase activity of skinned fibers from rabbit skeletal muscle. J. Biol. Chem. 260 (1985) 3496-3501
-
(1985)
J. Biol. Chem.
, vol.260
, pp. 3496-3501
-
-
Hibberd, M.G.1
Webb, M.R.2
Goldman, Y.E.3
Trentham, D.R.4
-
25
-
-
0002674352
-
Stopped-flow techniques
-
Harding S.E., and Chowdry B.Z. (Eds), Oxford University Press, Oxford, UK
-
Eccleston J.F., Hutchinson J.P., and White H.D. Stopped-flow techniques. In: Harding S.E., and Chowdry B.Z. (Eds). Protein-Ligand Interactions: Structure and Spectroscopy. A Practical Approach Series (2001), Oxford University Press, Oxford, UK 201-237
-
(2001)
Protein-Ligand Interactions: Structure and Spectroscopy. A Practical Approach Series
, pp. 201-237
-
-
Eccleston, J.F.1
Hutchinson, J.P.2
White, H.D.3
-
26
-
-
12344279980
-
Equilibrium and kinetic analysis of nucleotide binding to the DEAD-box RNA helicase DbpA
-
Talavera M.A., and De La Cruz E.M. Equilibrium and kinetic analysis of nucleotide binding to the DEAD-box RNA helicase DbpA. Biochemistry 44 (2005) 959-970
-
(2005)
Biochemistry
, vol.44
, pp. 959-970
-
-
Talavera, M.A.1
De La Cruz, E.M.2
-
27
-
-
0032546576
-
Loop I can modulate ADP affinity, ATPase activity, and motility of different scallop myosins. Transient kinetic analysis of S1 isoforms
-
Kurzawa-Goertz S.E., Perreault-Micale C.L., Trybus K.M., Szent-Györgyi A.G., and Geeves M.A. Loop I can modulate ADP affinity, ATPase activity, and motility of different scallop myosins. Transient kinetic analysis of S1 isoforms. Biochemistry 37 (1998) 7517-7525
-
(1998)
Biochemistry
, vol.37
, pp. 7517-7525
-
-
Kurzawa-Goertz, S.E.1
Perreault-Micale, C.L.2
Trybus, K.M.3
Szent-Györgyi, A.G.4
Geeves, M.A.5
-
28
-
-
33751108780
-
Kinetic mechanism of a single-headed myosinV construct using a novel fluorescent ATP analogue
-
Forgacs E., Cartwright S., Kovacs M., Sakamoto T., Sellers J., Corrie J.E.T., et al. Kinetic mechanism of a single-headed myosinV construct using a novel fluorescent ATP analogue. Biochemistry 45 (2006) 13035-13045
-
(2006)
Biochemistry
, vol.45
, pp. 13035-13045
-
-
Forgacs, E.1
Cartwright, S.2
Kovacs, M.3
Sakamoto, T.4
Sellers, J.5
Corrie, J.E.T.6
-
29
-
-
34447266733
-
Directional loading and stimulation of PcrA helicase by the replication initiator protein RepD
-
Zhang W., Dillingham M.S., Thomas C.D., Allen S., Roberts C.J., and Soultanas P. Directional loading and stimulation of PcrA helicase by the replication initiator protein RepD. J. Mol. Biol. 371 (2007) 336-348
-
(2007)
J. Mol. Biol.
, vol.371
, pp. 336-348
-
-
Zhang, W.1
Dillingham, M.S.2
Thomas, C.D.3
Allen, S.4
Roberts, C.J.5
Soultanas, P.6
-
30
-
-
0028566711
-
Kinetic mechanism of adenine nucleotide binding to and hydrolysis by the Escherichia coli Rep monomer. 1. Use of fluorescent nucleotide analogues
-
Moore K.J., and Lohman T.M. Kinetic mechanism of adenine nucleotide binding to and hydrolysis by the Escherichia coli Rep monomer. 1. Use of fluorescent nucleotide analogues. Biochemistry 33 (1994) 14550-14564
-
(1994)
Biochemistry
, vol.33
, pp. 14550-14564
-
-
Moore, K.J.1
Lohman, T.M.2
-
31
-
-
0028598302
-
Kinetic mechanism of adenine nucleotide binding to and hydrolysis by the Escherichia coli Rep monomer. 2. Application of a kinetic competition approach
-
Moore K.J., and Lohman T.M. Kinetic mechanism of adenine nucleotide binding to and hydrolysis by the Escherichia coli Rep monomer. 2. Application of a kinetic competition approach. Biochemistry 33 (1994) 14565-14578
-
(1994)
Biochemistry
, vol.33
, pp. 14565-14578
-
-
Moore, K.J.1
Lohman, T.M.2
-
32
-
-
0033617117
-
A two-site kinetic mechanism for ATP binding and hydrolysis by E. coli Rep helicase dimer bound to a single-stranded oligodeoxynucleotide
-
Hsieh J., Moore K.J.M., and Lohman T.M. A two-site kinetic mechanism for ATP binding and hydrolysis by E. coli Rep helicase dimer bound to a single-stranded oligodeoxynucleotide. J. Mol. Biol. 288 (1999) 255-274
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 255-274
-
-
Hsieh, J.1
Moore, K.J.M.2
Lohman, T.M.3
-
33
-
-
39649096274
-
The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA
-
Henn A., Cao W., Hackney D.D., and De La Cruz E.M. The ATPase cycle mechanism of the DEAD-box rRNA helicase, DbpA. J. Mol. Biol. 377 (2008) 193-205
-
(2008)
J. Mol. Biol.
, vol.377
, pp. 193-205
-
-
Henn, A.1
Cao, W.2
Hackney, D.D.3
De La Cruz, E.M.4
-
34
-
-
0035902592
-
Defining the roles of individual residues in the single-stranded DNA binding site of PcrA helicase
-
Dillingham M.S., Soultanas P., Wiley P., Webb M.R., and Wigley D.B. Defining the roles of individual residues in the single-stranded DNA binding site of PcrA helicase. Proc. Natl Acad. Sci. USA 98 (2001) 8381-8387
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 8381-8387
-
-
Dillingham, M.S.1
Soultanas, P.2
Wiley, P.3
Webb, M.R.4
Wigley, D.B.5
-
35
-
-
0022463569
-
Relationship between chemical and mechanical events during muscular contraction
-
Hibberd M.G., and Trentham D.R. Relationship between chemical and mechanical events during muscular contraction. Annu. Rev. Biophys. Biophys. Chem. 15 (1986) 119-161
-
(1986)
Annu. Rev. Biophys. Biophys. Chem.
, vol.15
, pp. 119-161
-
-
Hibberd, M.G.1
Trentham, D.R.2
-
36
-
-
0029873077
-
The kinetic cycles of myosin, kinesin, and dynein
-
Hackney D.D. The kinetic cycles of myosin, kinesin, and dynein. Annu. Rev. Physiol. 58 (1996) 731
-
(1996)
Annu. Rev. Physiol.
, vol.58
, pp. 731
-
-
Hackney, D.D.1
-
37
-
-
1642333310
-
Relating biochemistry and function in the myosin superfamily
-
De La Cruz E.M., and Ostap E.M. Relating biochemistry and function in the myosin superfamily. Curr. Opin. Cell Biol. 16 (2004) 61-67
-
(2004)
Curr. Opin. Cell Biol.
, vol.16
, pp. 61-67
-
-
De La Cruz, E.M.1
Ostap, E.M.2
-
38
-
-
0032102956
-
Characterisation of Bacillus stearothermophilus PcrA helicase: evidence against an active rolling mechanism
-
Bird L.E., Brannigan J.A., Subramanya H.S., and Wigley D.B. Characterisation of Bacillus stearothermophilus PcrA helicase: evidence against an active rolling mechanism. Nucleic Acids Res. 26 (1998) 2686-2693
-
(1998)
Nucleic Acids Res.
, vol.26
, pp. 2686-2693
-
-
Bird, L.E.1
Brannigan, J.A.2
Subramanya, H.S.3
Wigley, D.B.4
-
39
-
-
0019877623
-
The mechanism of ATP hydrolysis catalyzed by myosin and actomyosin, using rapid reaction techniques to study oxygen exchange
-
Webb M.R., and Trentham D.R. The mechanism of ATP hydrolysis catalyzed by myosin and actomyosin, using rapid reaction techniques to study oxygen exchange. J. Biol. Chem. 256 (1981) 10910-10916
-
(1981)
J. Biol. Chem.
, vol.256
, pp. 10910-10916
-
-
Webb, M.R.1
Trentham, D.R.2
-
40
-
-
0020674810
-
New ribose-modified fluorescent analogs of adenine and guanine nucleotides available as substrates for various enzymes
-
Hiratsuka T. New ribose-modified fluorescent analogs of adenine and guanine nucleotides available as substrates for various enzymes. Biochim. Biophys. Acta 742 (1983) 496-508
-
(1983)
Biochim. Biophys. Acta
, vol.742
, pp. 496-508
-
-
Hiratsuka, T.1
-
41
-
-
0030971247
-
Fluorescent nucleotide analogs: synthesis and applications
-
Jameson D.M., and Eccleston J.F. Fluorescent nucleotide analogs: synthesis and applications. Methods Enzymol. 278 (1997) 363-390
-
(1997)
Methods Enzymol.
, vol.278
, pp. 363-390
-
-
Jameson, D.M.1
Eccleston, J.F.2
-
43
-
-
0027180850
-
Interaction of GTPase activating proteins (GAPs) with p21ras measured by a novel fluorescence anisotropy method. Essential role of Arg-903 of GAP in activation of GTP hydrolysis on p21ras
-
Brownbridge G.G., Lowe P.N., Moore K.J.M., Skinner R.H., and Webb M.R. Interaction of GTPase activating proteins (GAPs) with p21ras measured by a novel fluorescence anisotropy method. Essential role of Arg-903 of GAP in activation of GTP hydrolysis on p21ras. J. Biol. Chem. 268 (1993) 10914-10919
-
(1993)
J. Biol. Chem.
, vol.268
, pp. 10914-10919
-
-
Brownbridge, G.G.1
Lowe, P.N.2
Moore, K.J.M.3
Skinner, R.H.4
Webb, M.R.5
|