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Volumn 41, Issue 4, 2013, Pages 2746-2755

Mechanical unfolding of human telomere G-quadruplex DNA probed by integrated fluorescence and magnetic tweezers spectroscopy

Author keywords

[No Author keywords available]

Indexed keywords

GUANINE QUADRUPLEX;

EID: 84876397592     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks1341     Document Type: Article
Times cited : (100)

References (41)
  • 1
    • 0035957720 scopus 로고    scopus 로고
    • Reversible unfolding of single RNA molecules by mechanical force
    • Liphardt, J., Onoa, B., Smith, S.B., Tinoco, I. Jr and Bustamante, C. (2001) Reversible unfolding of single RNA molecules by mechanical force. Science, 292, 733-737.
    • (2001) Science , vol.292 , pp. 733-737
    • Liphardt, J.1    Onoa, B.2    Smith, S.B.3    Tinoco Jr., I.4    Bustamante, C.5
  • 4
    • 33646131832 scopus 로고    scopus 로고
    • Probing the mechanical folding kinetics of TAR RNA by hopping force-jump, and force-ramp methods
    • Li, P.T., Collin, D., Smith, S.B., Bustamante, C. and Tinoco, I. Jr (2006) Probing the mechanical folding kinetics of TAR RNA by hopping, force-jump, and force-ramp methods. Biophys. J., 90, 250-260.
    • (2006) Biophys. J. , vol.90 , pp. 250-260
    • Li, P.T.1    Collin, D.2    Smith, S.B.3    Bustamante, C.4    Tinoco Jr., I.5
  • 5
    • 0242417558 scopus 로고    scopus 로고
    • Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme
    • Onoa, B., Dumont, S., Liphardt, J., Smith, S.B., Tinoco, I. Jr and Bustamante, C. (2003) Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme. Science, 299, 1892-1895.
    • (2003) Science , vol.299 , pp. 1892-1895
    • Onoa, B.1    Dumont, S.2    Liphardt, J.3    Smith, S.B.4    Tinoco Jr., I.5    Bustamante, C.6
  • 6
    • 35348897239 scopus 로고    scopus 로고
    • Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction
    • Hohng, S., Zhou, R., Nahas, M.K., Yu, J., Schulten, K., Lilley, D.M. and Ha, T. (2007) Fluorescence-force spectroscopy maps two-dimensional reaction landscape of the holliday junction. Science, 318, 279-283.
    • (2007) Science , vol.318 , pp. 279-283
    • Hohng, S.1    Zhou, R.2    Nahas, M.K.3    Yu, J.4    Schulten, K.5    Lilley, D.M.6    Ha, T.7
  • 7
    • 77950444848 scopus 로고    scopus 로고
    • Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension
    • Lee, M., Kim, S.H. and Hong, S.C. (2010) Minute negative superhelicity is sufficient to induce the B-Z transition in the presence of low tension. Proc. Natl Acad. Sci. USA, 107, 4985-4990.
    • (2010) Proc. Natl Acad. Sci. USA , vol.107 , pp. 4985-4990
    • Lee, M.1    Kim, S.H.2    Hong, S.C.3
  • 8
  • 9
    • 33746702015 scopus 로고    scopus 로고
    • Interlaced optical force-fluorescence measurements for single molecule biophysics
    • Brau, R.R., Tarsa, P.B., Ferrer, J.M., Lee, P. and Lang, M.J. (2006) Interlaced optical force-fluorescence measurements for single molecule biophysics. Biophys. J., 91, 1069-1077.
    • (2006) Biophys. J. , vol.91 , pp. 1069-1077
    • Brau, R.R.1    Tarsa, P.B.2    Ferrer, J.M.3    Lee, P.4    Lang, M.J.5
  • 10
    • 34247635655 scopus 로고    scopus 로고
    • Detecting force-induced molecular transitions with fluorescence resonant energy transfer
    • Tarsa, P.B., Brau, R.R., Barch, M., Ferrer, J.M., Freyzon, Y., Matsudaira, P. and Lang, M.J. (2007) Detecting force-induced molecular transitions with fluorescence resonant energy transfer. Angew. Chem., 46, 1999-2001.
    • (2007) Angew. Chem. , vol.46 , pp. 1999-2001
    • Tarsa, P.B.1    Brau, R.R.2    Barch, M.3    Ferrer, J.M.4    Freyzon, Y.5    Matsudaira, P.6    Lang, M.J.7
  • 11
    • 46249125488 scopus 로고    scopus 로고
    • How shelterin protects mammalian telomeres
    • Palm, W. and de Lange, T. (2008) How shelterin protects mammalian telomeres. Annu. Rev. Genet., 42, 301-334.
    • (2008) Annu. Rev. Genet. , vol.42 , pp. 301-334
    • Palm, W.1    De Lange, T.2
  • 12
    • 33847372902 scopus 로고    scopus 로고
    • Physiological relevance of telomeric G-quadruplex formation: A potential drug target
    • Oganesian, L. and Bryan, T.M. (2007) Physiological relevance of telomeric G-quadruplex formation: a potential drug target. Bioessays, 29, 155-165.
    • (2007) Bioessays , vol.29 , pp. 155-165
    • Oganesian, L.1    Bryan, T.M.2
  • 14
    • 0027918585 scopus 로고
    • Solution structure of the human telomeric repeat d[AG3(T2AG3) 3] G-tetraplex
    • Wang, Y. and Patel, D.J. (1993) Solution structure of the human telomeric repeat d[AG3(T2AG3)3] G-tetraplex. Structure, 1, 263-282.
    • (1993) Structure , vol.1 , pp. 263-282
    • Wang, Y.1    Patel, D.J.2
  • 15
    • 0037142071 scopus 로고    scopus 로고
    • Crystal structure of parallel quadruplexes from human telomeric DNA
    • Parkinson, G.N., Lee, M.P. and Neidle, S. (2002) Crystal structure of parallel quadruplexes from human telomeric DNA. Nature, 417, 876-880.
    • (2002) Nature , vol.417 , pp. 876-880
    • Parkinson, G.N.1    Lee, M.P.2    Neidle, S.3
  • 16
    • 33646943863 scopus 로고    scopus 로고
    • Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/ antiparallel strands in potassium solution
    • Ambrus, A., Chen, D., Dai, J., Bialis, T., Jones, R.A. and Yang, D. (2006) Human telomeric sequence forms a hybrid-type intramolecular G-quadruplex structure with mixed parallel/ antiparallel strands in potassium solution. Nucleic Acids Res., 34, 2723-2735.
    • (2006) Nucleic Acids Res. , vol.34 , pp. 2723-2735
    • Ambrus, A.1    Chen, D.2    Dai, J.3    Bialis, T.4    Jones, R.A.5    Yang, D.6
  • 17
    • 47249089630 scopus 로고    scopus 로고
    • Polymorphism of human telomeric quadruplex structures
    • Dai, J., Carver, M. and Yang, D. (2008) Polymorphism of human telomeric quadruplex structures. Biochimie, 90, 1172-1183.
    • (2008) Biochimie , vol.90 , pp. 1172-1183
    • Dai, J.1    Carver, M.2    Yang, D.3
  • 18
    • 23844438712 scopus 로고    scopus 로고
    • Not so crystal clear: The structure of the human telomere G-quadruplex in solution differs from that present in a crystal
    • Li, J., Correia, J.J., Wang, L., Trent, J.O. and Chaires, J.B. (2005) Not so crystal clear: the structure of the human telomere G-quadruplex in solution differs from that present in a crystal. Nucleic Acids Res., 33, 4649-4659.
    • (2005) Nucleic Acids Res. , vol.33 , pp. 4649-4659
    • Li, J.1    Correia, J.J.2    Wang, L.3    Trent, J.O.4    Chaires, J.B.5
  • 19
    • 33746600695 scopus 로고    scopus 로고
    • Structure of the human telomere in K+solution: An intramolecular (3+1) G-quadruplex scaffold
    • Luu, K.N., Phan, A.T., Kuryavyi, V., Lacroix, L. and Patel, D.J. (2006) Structure of the human telomere in K+solution: an intramolecular (3+1) G-quadruplex scaffold. J. Am. Chem. Soc., 128, 9963-9970.
    • (2006) J. Am. Chem. Soc. , vol.128 , pp. 9963-9970
    • Luu, K.N.1    Phan, A.T.2    Kuryavyi, V.3    Lacroix, L.4    Patel, D.J.5
  • 21
    • 30044448463 scopus 로고    scopus 로고
    • Extreme conformational diversity in human telomeric DNA
    • Lee, J.Y., Okumus, B., Kim, D.S. and Ha, T. (2005) Extreme conformational diversity in human telomeric DNA. Proc. Natl Acad. Sci. USA, 102, 18938-18943.
    • (2005) Proc. Natl Acad. Sci. USA , vol.102 , pp. 18938-18943
    • Lee, J.Y.1    Okumus, B.2    Kim, D.S.3    Ha, T.4
  • 22
    • 0344304471 scopus 로고    scopus 로고
    • Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer
    • Ying, L., Green, J.J., Li, H., Klenerman, D. and Balasubramanian, S. (2003) Studies on the structure and dynamics of the human telomeric G quadruplex by single-molecule fluorescence resonance energy transfer. Proc. Natl Acad. Sci. USA, 100, 14629-14634.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 14629-14634
    • Ying, L.1    Green, J.J.2    Li, H.3    Klenerman, D.4    Balasubramanian, S.5
  • 23
    • 68949105457 scopus 로고    scopus 로고
    • Single molecule force spectroscopy on G-quadruplex DNA
    • Lynch, S., Baker, H., Byker, S.G., Zhou, D. and Sinniah, K. (2009) Single molecule force spectroscopy on G-quadruplex DNA. Chemistry, 15, 8113-8116.
    • (2009) Chemistry , vol.15 , pp. 8113-8116
    • Lynch, S.1    Baker, H.2    Byker, S.G.3    Zhou, D.4    Sinniah, K.5
  • 25
    • 84864453805 scopus 로고    scopus 로고
    • Click chemistry assisted single-molecule fingerprinting reveals a 3D biomolecular folding funnel
    • Yu, Z., Koirala, D., Cui, Y., Easterling, L.F., Zhao, Y. and Mao, H. (2012) Click chemistry assisted single-molecule fingerprinting reveals a 3D biomolecular folding funnel. J. Am. Chem. Soc., 134, 12338-12341.
    • (2012) J. Am. Chem. Soc. , vol.134 , pp. 12338-12341
    • Yu, Z.1    Koirala, D.2    Cui, Y.3    Easterling, L.F.4    Zhao, Y.5    Mao, H.6
  • 26
    • 84864493844 scopus 로고    scopus 로고
    • Single-molecule study of g-quadruplex disruption using dynamic force spectroscopy
    • de Messieres, M., Chang, J.C., Brawn-Cinani, B. and La Porta, A. (2012) Single-molecule study of g-quadruplex disruption using dynamic force spectroscopy. Phys. Rev. Lett., 109, 058101.
    • (2012) Phys. Rev. Lett. , vol.109 , pp. 058101
    • De Messieres, M.1    Chang, J.C.2    Brawn-Cinani, B.3    La Porta, A.4
  • 27
    • 33746747438 scopus 로고    scopus 로고
    • Analysis of single-molecule FRET trajectories using hidden Markov modeling
    • McKinney, S.A., Joo, C. and Ha, T. (2006) Analysis of single-molecule FRET trajectories using hidden Markov modeling. Biophys. J., 91, 1941-1951.
    • (2006) Biophys. J. , vol.91 , pp. 1941-1951
    • McKinney, S.A.1    Joo, C.2    Ha, T.3
  • 28
    • 68949105584 scopus 로고    scopus 로고
    • Quantitative modeling and optimization of magnetic tweezers
    • Lipfert, J., Hao, X. and Dekker, N.H. (2009) Quantitative modeling and optimization of magnetic tweezers. Biophys. J., 96, 5040-5049.
    • (2009) Biophys. J. , vol.96 , pp. 5040-5049
    • Lipfert, J.1    Hao, X.2    Dekker, N.H.3
  • 29
    • 44449134820 scopus 로고    scopus 로고
    • A practical guide to single-molecule FRET
    • Roy, R., Hohng, S. and Ha, T. (2008) A practical guide to single-molecule FRET. Nat. Methods, 5, 507-516.
    • (2008) Nat. Methods , vol.5 , pp. 507-516
    • Roy, R.1    Hohng, S.2    Ha, T.3
  • 31
    • 21644460419 scopus 로고    scopus 로고
    • Telomestatin and diseleno sapphyrin bind selectively to two different forms of the human telomeric G-quadruplex structure
    • Rezler, E.M., Seenisamy, J., Bashyam, S., Kim, M.Y., White, E., Wilson, W.D. and Hurley, L.H. (2005) Telomestatin and diseleno sapphyrin bind selectively to two different forms of the human telomeric G-quadruplex structure. J. Am. Chem. Soc., 127, 9439-9447.
    • (2005) J. Am. Chem. Soc. , vol.127 , pp. 9439-9447
    • Rezler, E.M.1    Seenisamy, J.2    Bashyam, S.3    Kim, M.Y.4    White, E.5    Wilson, W.D.6    Hurley, L.H.7
  • 34
    • 1942423138 scopus 로고    scopus 로고
    • Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy
    • Murphy, M.C., Rasnik, I., Cheng, W., Lohman, T.M. and Ha, T. (2004) Probing single-stranded DNA conformational flexibility using fluorescence spectroscopy. Biophys. J., 86, 2530-2537.
    • (2004) Biophys. J. , vol.86 , pp. 2530-2537
    • Murphy, M.C.1    Rasnik, I.2    Cheng, W.3    Lohman, T.M.4    Ha, T.5
  • 35
    • 65249175153 scopus 로고    scopus 로고
    • Energetics and kinetics of a conformational switch in G-quadruplex DNA
    • Gray, R.D., Li, J. and Chaires, J.B. (2009) Energetics and kinetics of a conformational switch in G-quadruplex DNA. J. Phys. Chem. B, 113, 2676-2683.
    • (2009) J. Phys. Chem. B , vol.113 , pp. 2676-2683
    • Gray, R.D.1    Li, J.2    Chaires, J.B.3
  • 36
    • 78649236626 scopus 로고    scopus 로고
    • Folding pathways of human telomeric type-1 and type-2 G-quadruplex structures
    • Mashimo, T., Yagi, H., Sannohe, Y., Rajendran, A. and Sugiyama, H. (2010) Folding pathways of human telomeric type-1 and type-2 G-quadruplex structures. J. Am. Chem. Soc., 132, 14910-14918.
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 14910-14918
    • Mashimo, T.1    Yagi, H.2    Sannohe, Y.3    Rajendran, A.4    Sugiyama, H.5
  • 37
    • 77950344651 scopus 로고    scopus 로고
    • Structure of a two-G-tetrad intramolecular G-quadruplex formed by a variant human telomeric sequence in K+solution: Insights into the interconversion of human telomeric G-quadruplex structures
    • Zhang, Z., Dai, J., Veliath, E., Jones, R.A. and Yang, D. (2010) Structure of a two-G-tetrad intramolecular G-quadruplex formed by a variant human telomeric sequence in K+solution: insights into the interconversion of human telomeric G-quadruplex structures. Nucleic Acids Res., 38, 1009-1021.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 1009-1021
    • Zhang, Z.1    Dai, J.2    Veliath, E.3    Jones, R.A.4    Yang, D.5
  • 40
    • 33750447980 scopus 로고    scopus 로고
    • Unusual mechanical stability of a minimal RNA kissing complex
    • Li, P.T., Bustamante, C. and Tinoco, I. Jr (2006) Unusual mechanical stability of a minimal RNA kissing complex. Proc. Natl. Acad. Sci. USA, 103, 15847-15852.
    • (2006) Proc. Natl. Acad. Sci. USA , vol.103 , pp. 15847-15852
    • Li, P.T.1    Bustamante, C.2    Tinoco Jr., I.3


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