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Volumn 275, Issue 5298, 1997, Pages 377-380

Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL ENZYME; DOUBLE STRANDED DNA; HELICASE;

EID: 0031031958     PISSN: 00368075     EISSN: None     Source Type: Journal    
DOI: 10.1126/science.275.5298.377     Document Type: Article
Times cited : (236)

References (37)
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    • A. Sancar, Science 266, 1954 (1994); P. Modrich, ibid., p. 1959.
    • Science , pp. 1959
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    • T. M. Lohman, Mol. Microbiol. 6, 5 (1992); J. Biol. Chem. 268, 2269 (1993).
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    • G. T. Runyon and T. M. Lohman, ibid. 264, 17502 (1989); G. T. Runyon, D. G. Bear, T. M. Lohman, Proc. Natl. Acad. Sci. U.S.A. 87, 6383 (1990).
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    • Runyon, G.T.1    Lohman, T.M.2
  • 22
    • 1842340015 scopus 로고    scopus 로고
    • note
    • 40 ssDNA attached to the 3′ end of the bottom strand. Oligodeoxythymidylates were used to avoid intramolecular base pairing within the ssDNA. A 40-nucleotide 3′ ssDN A is optimal for the initiation of DNA unwinding by UvrD in vitro, and a 5′ ssDNA tail does not facilitate initiation of DNA unwinding (9).
  • 23
    • 1842277708 scopus 로고    scopus 로고
    • note
    • 2,5 mM 2-mercaptoethanol, 10% (v/v) glycerol, and 0.1 mg/ml bovine serum albumin (BSA). Buffer A is 25 mM tris, pH 7.5, at 25°C, 6 mM NaCl, 5 mM 2-mercaptoethanol, and 10% (v/v) glycerol.
  • 24
    • 1842343892 scopus 로고    scopus 로고
    • note
    • 15 concentration (0 to 25 μM).
  • 26
    • 1842349664 scopus 로고    scopus 로고
    • note
    • Single-turnover unwinding rates (measured with DNA substrates I and II) were independent of the UvrD concentration [3 nM to 150 nM (monomer)]; hence, unwinding initiates from prebound complexes. The apparent equilibrium dissociation constant for UvrD binding to the substrate is 1 to 2 nM; hence, at 80 nM UvrD, all the DNA is bound to UvrD.
  • 28
    • 1842264989 scopus 로고    scopus 로고
    • note
    • obs was affected.
  • 29
    • 1842378736 scopus 로고    scopus 로고
    • note
    • NP to form a productive complex.
  • 30
    • 1842347744 scopus 로고    scopus 로고
    • note
    • L, reflects slower unwinding by nonproductive complexes (25).
  • 31
    • 1742417327 scopus 로고    scopus 로고
    • note
    • Nonlinear least squares analyses were performed with Scientist (MicroMath Scientific Software, Salt Lake City, UT) and plotted with KaleidaGraph (Synergy Software, Reading, PA). Uncertainties are reported as 95% confidence limits.
  • 32
    • 1842384469 scopus 로고    scopus 로고
    • note
    • NP provides additional constraints on the upper limit of n for each duplex, assuming the step size, m = L/n, is independent of L. Global fits with m = 2 or 3 gave poorer fits.
  • 33
    • 1842387434 scopus 로고    scopus 로고
    • note
    • 1 may decrease in a step-wise manner with L, and this may contribute to our non-integer (4.4) estimate of the step size.
  • 37
    • 1842310362 scopus 로고    scopus 로고
    • note
    • We thank I. Wong, K. Bjornson, and K. Moore for critical discussions; M. Amaratunga for preliminary experiments; W. van Zante and T. Ho for DNA synthesis; and P. Burgers, R. Gregorian, and J. Hsieh for comments on the manuscript. Supported in part by NIH grant GM45948.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.