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5
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1842379671
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P. R. Caron, S. R. Kushner, L. Grossman, Proc. Natl. Acad. Sci. U.S.A. 82, 4925 (1985); I. Husain, B. van Houten, D. C. Thomas, M. Abdel-Monem, A. Sancar, ibid., p. 6774.
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Caron, P.R.1
Kushner, S.R.2
Grossman, L.3
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6
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1842379671
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P. R. Caron, S. R. Kushner, L. Grossman, Proc. Natl. Acad. Sci. U.S.A. 82, 4925 (1985); I. Husain, B. van Houten, D. C. Thomas, M. Abdel-Monem, A. Sancar, ibid., p. 6774.
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Proc. Natl. Acad. Sci. U.S.A.
, pp. 6774
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Husain, I.1
Van Houten, B.2
Thomas, D.C.3
Abdel-Monem, M.4
Sancar, A.5
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7
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0028606403
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A. Sancar, Science 266, 1954 (1994); P. Modrich, ibid., p. 1959.
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Science
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Sancar, A.1
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8
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0028606403
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A. Sancar, Science 266, 1954 (1994); P. Modrich, ibid., p. 1959.
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Science
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Modrich, P.1
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13
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0027518667
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T. M. Lohman, Mol. Microbiol. 6, 5 (1992); J. Biol. Chem. 268, 2269 (1993).
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16
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0024407628
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G. T. Runyon and T. M. Lohman, ibid. 264, 17502 (1989); G. T. Runyon, D. G. Bear, T. M. Lohman, Proc. Natl. Acad. Sci. U.S.A. 87, 6383 (1990).
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Runyon, G.T.1
Lohman, T.M.2
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17
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0025127419
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G. T. Runyon and T. M. Lohman, ibid. 264, 17502 (1989); G. T. Runyon, D. G. Bear, T. M. Lohman, Proc. Natl. Acad. Sci. U.S.A. 87, 6383 (1990).
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Runyon, G.T.1
Bear, D.G.2
Lohman, T.M.3
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22
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1842340015
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note
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40 ssDNA attached to the 3′ end of the bottom strand. Oligodeoxythymidylates were used to avoid intramolecular base pairing within the ssDNA. A 40-nucleotide 3′ ssDN A is optimal for the initiation of DNA unwinding by UvrD in vitro, and a 5′ ssDNA tail does not facilitate initiation of DNA unwinding (9).
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-
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23
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1842277708
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note
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2,5 mM 2-mercaptoethanol, 10% (v/v) glycerol, and 0.1 mg/ml bovine serum albumin (BSA). Buffer A is 25 mM tris, pH 7.5, at 25°C, 6 mM NaCl, 5 mM 2-mercaptoethanol, and 10% (v/v) glycerol.
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-
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24
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1842343892
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note
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15 concentration (0 to 25 μM).
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25
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0028138413
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K. P. Bjornson, M. Amaratunga, K. J. M. Moore, T. M. Lohman, Biochemistry 33, 14306 (1994).
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(1994)
Biochemistry
, vol.33
, pp. 14306
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Bjornson, K.P.1
Amaratunga, M.2
Moore, K.J.M.3
Lohman, T.M.4
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26
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1842349664
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note
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Single-turnover unwinding rates (measured with DNA substrates I and II) were independent of the UvrD concentration [3 nM to 150 nM (monomer)]; hence, unwinding initiates from prebound complexes. The apparent equilibrium dissociation constant for UvrD binding to the substrate is 1 to 2 nM; hence, at 80 nM UvrD, all the DNA is bound to UvrD.
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28
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1842264989
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note
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obs was affected.
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29
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1842378736
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note
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NP to form a productive complex.
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-
-
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30
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1842347744
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note
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L, reflects slower unwinding by nonproductive complexes (25).
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31
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1742417327
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note
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Nonlinear least squares analyses were performed with Scientist (MicroMath Scientific Software, Salt Lake City, UT) and plotted with KaleidaGraph (Synergy Software, Reading, PA). Uncertainties are reported as 95% confidence limits.
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32
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1842384469
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note
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NP provides additional constraints on the upper limit of n for each duplex, assuming the step size, m = L/n, is independent of L. Global fits with m = 2 or 3 gave poorer fits.
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-
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33
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1842387434
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note
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1 may decrease in a step-wise manner with L, and this may contribute to our non-integer (4.4) estimate of the step size.
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35
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0026646192
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I. Wong, K. L. Chao, W. Bujalowski, T. M. Lohman, J. Biol. Chem. 267, 7596 (1992).
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(1992)
J. Biol. Chem.
, vol.267
, pp. 7596
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Wong, I.1
Chao, K.L.2
Bujalowski, W.3
Lohman, T.M.4
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37
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1842310362
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note
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We thank I. Wong, K. Bjornson, and K. Moore for critical discussions; M. Amaratunga for preliminary experiments; W. van Zante and T. Ho for DNA synthesis; and P. Burgers, R. Gregorian, and J. Hsieh for comments on the manuscript. Supported in part by NIH grant GM45948.
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