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Volumn 23, Issue 3, 2015, Pages 570-577

Efficient and allele-specific genome editing of disease loci in human iPSCs

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA 1 ANTITRYPSIN; CRISPR ASSOCIATED PROTEIN; JANUS KINASE 2; NUCLEOTIDE; PHENYLALANINE; TRANSCRIPTION ACTIVATOR LIKE EFFECTOR NUCLEASE; VALINE; BACTERIAL PROTEIN; CAS9 PROTEIN, FRANCISELLA NOVICIDA; ENDONUCLEASE; GUIDE RNA;

EID: 84924033062     PISSN: 15250016     EISSN: 15250024     Source Type: Journal    
DOI: 10.1038/mt.2014.226     Document Type: Article
Times cited : (144)

References (45)
  • 1
    • 67649170378 scopus 로고    scopus 로고
    • Gene targeting of a disease-related gene in human induced pluripotent stem and embryonic stem cells
    • Zou, J, Maeder, ML, Mali, P, Pruett-Miller, SM, Thibodeau-Beganny, S, Chou, BK et al. (2009). Gene targeting of a disease-related gene in human induced pluripotent stem and embryonic stem cells. Cell Stem Cell 5: 97-110.
    • (2009) Cell Stem Cell , vol.5 , pp. 97-110
    • Zou, J.1    Maeder, M.L.2    Mali, P.3    Pruett-Miller, S.M.4    Thibodeau-Beganny, S.5    Chou, B.K.6
  • 2
    • 70249114821 scopus 로고    scopus 로고
    • Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases
    • Hockemeyer, D, Soldner, F, Beard, C, Gao, Q, Mitalipova, M, DeKelver, RC et al. (2009). Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases. Nat Biotechnol 27: 851-857.
    • (2009) Nat Biotechnol , vol.27 , pp. 851-857
    • Hockemeyer, D.1    Soldner, F.2    Beard, C.3    Gao, Q.4    Mitalipova, M.5    DeKelver, R.C.6
  • 5
    • 84873729095 scopus 로고    scopus 로고
    • Multiplex genome engineering using CRISPR/Cas systems
    • Cong, L, Ran, FA, Cox, D, Lin, S, Barretto, R, Habib, N et al. (2013). Multiplex genome engineering using CRISPR/Cas systems. Science 339: 819-823.
    • (2013) Science , vol.339 , pp. 819-823
    • Cong, L.1    Ran, F.A.2    Cox, D.3    Lin, S.4    Barretto, R.5    Habib, N.6
  • 6
    • 84878594015 scopus 로고    scopus 로고
    • A crisper look at genome editing: RNA-guided genome modification
    • Damian, M and Porteus, MH (2013). A crisper look at genome editing: RNA-guided genome modification. Mol Ther 21: 720-722.
    • (2013) Mol Ther , vol.21 , pp. 720-722
    • Damian, M.1    Porteus, M.H.2
  • 7
    • 84865070369 scopus 로고    scopus 로고
    • A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity
    • Jinek, M, Chylinski, K, Fonfara, I, Hauer, M, Doudna, JA and Charpentier, E (2012). A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity. Science 337: 816-821.
    • (2012) Science , vol.337 , pp. 816-821
    • Jinek, M.1    Chylinski, K.2    Fonfara, I.3    Hauer, M.4    Doudna, J.A.5    Charpentier, E.6
  • 8
    • 55249095625 scopus 로고    scopus 로고
    • Myeloproliferative disorders
    • Levine, RL and Gilliland, DG (2008). Myeloproliferative disorders. Blood 112: 2190-2198.
    • (2008) Blood , vol.112 , pp. 2190-2198
    • Levine, R.L.1    Gilliland, D.G.2
  • 9
    • 0037011795 scopus 로고    scopus 로고
    • Alpha1-antitrypsin deficiency-a model for conformational diseases
    • Carrell, RW and Lomas, DA (2002). Alpha1-antitrypsin deficiency-a model for conformational diseases. N Engl J Med 346: 45-53.
    • (2002) N Engl J Med , vol.346 , pp. 45-53
    • Carrell, R.W.1    Lomas, D.A.2
  • 10
    • 40949126488 scopus 로고    scopus 로고
    • Robust, persistent transgene expression in human embryonic stem cells is achieved with AAVS1-targeted integration
    • Smith, JR, Maguire, S, Davis, LA, Alexander, M, Yang, F, Chandran, S et al. (2008). Robust, persistent transgene expression in human embryonic stem cells is achieved with AAVS1-targeted integration. Stem Cells 26: 496-504.
    • (2008) Stem Cells , vol.26 , pp. 496-504
    • Smith, J.R.1    Maguire, S.2    Davis, L.A.3    Alexander, M.4    Yang, F.5    Chandran, S.6
  • 11
    • 80053350622 scopus 로고    scopus 로고
    • Site-specific integration and tailoring of cassette design for sustainable gene transfer
    • Lombardo, A, Cesana, D, Genovese, P, Di Stefano, B, Provasi, E, Colombo, DF et al. (2011). Site-specific integration and tailoring of cassette design for sustainable gene transfer. Nat Methods 8: 861-869.
    • (2011) Nat Methods , vol.8 , pp. 861-869
    • Lombardo, A.1    Cesana, D.2    Genovese, P.3    Di Stefano, B.4    Provasi, E.5    Colombo, D.F.6
  • 12
    • 79957587075 scopus 로고    scopus 로고
    • Oxidase-deficient neutrophils from X-linked chronic granulomatous disease iPS cells: Functional correction by zinc finger nuclease-mediated safe harbor targeting
    • Zou, J, Sweeney, CL, Chou, BK, Choi, U, Pan, J, Wang, H et al. (2011). Oxidase-deficient neutrophils from X-linked chronic granulomatous disease iPS cells: functional correction by zinc finger nuclease-mediated safe harbor targeting. Blood 117: 5561-5572.
    • (2011) Blood , vol.117 , pp. 5561-5572
    • Zou, J.1    Sweeney, C.L.2    Chou, B.K.3    Choi, U.4    Pan, J.5    Wang, H.6
  • 13
    • 84864710348 scopus 로고    scopus 로고
    • Efficient derivation and genetic modifications of human pluripotent stem cells on engineered human feeder cell lines
    • Zou, C, Chou, BK, Dowey, SN, Tsang, K, Huang, X, Liu, CF et al. (2012). Efficient derivation and genetic modifications of human pluripotent stem cells on engineered human feeder cell lines. Stem Cells Dev 21: 2298-2311.
    • (2012) Stem Cells Dev , vol.21 , pp. 2298-2311
    • Zou, C.1    Chou, B.K.2    Dowey, S.N.3    Tsang, K.4    Huang, X.5    Liu, C.F.6
  • 15
    • 84880570576 scopus 로고    scopus 로고
    • High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells
    • Fu, Y, Foden, JA, Khayter, C, Maeder, ML, Reyon, D, Joung, JK et al. (2013). High-frequency off-target mutagenesis induced by CRISPR-Cas nucleases in human cells. Nat Biotechnol 31: 822-826.
    • (2013) Nat Biotechnol , vol.31 , pp. 822-826
    • Fu, Y.1    Foden, J.A.2    Khayter, C.3    Maeder, M.L.4    Reyon, D.5    Joung, J.K.6
  • 16
    • 84894081986 scopus 로고    scopus 로고
    • Generation of gene-modified cynomolgus monkey via Cas9/RNA-mediated gene targeting in one-cell embryos
    • Niu, Y, Shen, B, Cui, Y, Chen, Y, Wang, J, Wang, L et al. (2014). Generation of gene-modified cynomolgus monkey via Cas9/RNA-mediated gene targeting in one-cell embryos. Cell 156: 836-843.
    • (2014) Cell , vol.156 , pp. 836-843
    • Niu, Y.1    Shen, B.2    Cui, Y.3    Chen, Y.4    Wang, J.5    Wang, L.6
  • 17
    • 84890050551 scopus 로고    scopus 로고
    • Correction of a genetic disease in mouse via use of CRISPR-Cas9
    • Wu, Y, Liang, D, Wang, Y, Bai, M, Tang, W, Bao, S et al. (2013). Correction of a genetic disease in mouse via use of CRISPR-Cas9. Cell Stem Cell 13: 659-662.
    • (2013) Cell Stem Cell , vol.13 , pp. 659-662
    • Wu, Y.1    Liang, D.2    Wang, Y.3    Bai, M.4    Tang, W.5    Bao, S.6
  • 18
    • 84890033064 scopus 로고    scopus 로고
    • Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients
    • Schwank, G, Koo, BK, Sasselli, V, Dekkers, JF, Heo, I, Demircan, T et al. (2013). Functional repair of CFTR by CRISPR/Cas9 in intestinal stem cell organoids of cystic fibrosis patients. Cell Stem Cell 13: 653-658.
    • (2013) Cell Stem Cell , vol.13 , pp. 653-658
    • Schwank, G.1    Koo, B.K.2    Sasselli, V.3    Dekkers, J.F.4    Heo, I.5    Demircan, T.6
  • 19
    • 84902095352 scopus 로고    scopus 로고
    • Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells
    • Wu, X, Scott, DA, Kriz, AJ, Chiu, AC, Hsu, PD, Dadon, DB et al. (2014). Genome-wide binding of the CRISPR endonuclease Cas9 in mammalian cells. Nat Biotechnol 32: 670-676.
    • (2014) Nat Biotechnol , vol.32 , pp. 670-676
    • Wu, X.1    Scott, D.A.2    Kriz, A.J.3    Chiu, A.C.4    Hsu, P.D.5    Dadon, D.B.6
  • 20
    • 84884289608 scopus 로고    scopus 로고
    • One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering
    • Yang, H, Wang, H, Shivalila, CS, Cheng, AW, Shi, L and Jaenisch, R (2013). One-step generation of mice carrying reporter and conditional alleles by CRISPR/Cas-mediated genome engineering. Cell 154: 1370-1379.
    • (2013) Cell , vol.154 , pp. 1370-1379
    • Yang, H.1    Wang, H.2    Shivalila, C.S.3    Cheng, A.W.4    Shi, L.5    Jaenisch, R.6
  • 22
    • 84902095353 scopus 로고    scopus 로고
    • Genome editing with Cas9 in adult mice corrects a disease mutation and phenotype
    • Yin, H, Xue, W, Chen, S, Bogorad, RL, Benedetti, E, Grompe, M et al. (2014). Genome editing with Cas9 in adult mice corrects a disease mutation and phenotype. Nat Biotechnol 32: 551-553.
    • (2014) Nat Biotechnol , vol.32 , pp. 551-553
    • Yin, H.1    Xue, W.2    Chen, S.3    Bogorad, R.L.4    Benedetti, E.5    Grompe, M.6
  • 23
    • 84903943282 scopus 로고    scopus 로고
    • Whole-genome sequencing analysis reveals high specificity of CRISPR/Cas9 and TALEN-based genome editing in human iPSCs
    • Smith, C, Gore, A, Yan, W, Abalde-Atristain, L, Li, Z, He, C et al. (2014). Whole-genome sequencing analysis reveals high specificity of CRISPR/Cas9 and TALEN-based genome editing in human iPSCs. Cell Stem Cell 15: 12-13.
    • (2014) Cell Stem Cell , vol.15 , pp. 12-13
    • Smith, C.1    Gore, A.2    Yan, W.3    Abalde-Atristain, L.4    Li, Z.5    He, C.6
  • 24
    • 84904010334 scopus 로고    scopus 로고
    • Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing
    • Veres, A, Gosis, BS, Ding, Q, Collins, R, Ragavendran, A, Brand, H et al. (2014). Low incidence of off-target mutations in individual CRISPR-Cas9 and TALEN targeted human stem cell clones detected by whole-genome sequencing. Cell Stem Cell 15: 27-30.
    • (2014) Cell Stem Cell , vol.15 , pp. 27-30
    • Veres, A.1    Gosis, B.S.2    Ding, Q.3    Collins, R.4    Ragavendran, A.5    Brand, H.6
  • 25
    • 84903942097 scopus 로고    scopus 로고
    • Targeted gene correction minimally impacts whole-genome mutational load in human-disease-specific induced pluripotent stem cell clones
    • Suzuki, K, Yu, C, Qu, J, Li, M, Yao, X, Yuan, T et al. (2014). Targeted gene correction minimally impacts whole-genome mutational load in human-disease-specific induced pluripotent stem cell clones. Cell Stem Cell 15: 31-36.
    • (2014) Cell Stem Cell , vol.15 , pp. 31-36
    • Suzuki, K.1    Yu, C.2    Qu, J.3    Li, M.4    Yao, X.5    Yuan, T.6
  • 26
    • 79952536226 scopus 로고    scopus 로고
    • Efficient human iPS cell derivation by a non-integrating plasmid from blood cells with unique epigenetic and gene expression signatures
    • Chou, BK, Mali, P, Huang, X, Ye, Z, Dowey, SN, Resar, LM et al. (2011). Efficient human iPS cell derivation by a non-integrating plasmid from blood cells with unique epigenetic and gene expression signatures. Cell Res 21: 518-529.
    • (2011) Cell Res , vol.21 , pp. 518-529
    • Chou, B.K.1    Mali, P.2    Huang, X.3    Ye, Z.4    Dowey, S.N.5    Resar, L.M.6
  • 27
    • 84863229606 scopus 로고    scopus 로고
    • Low incidence of DNA sequence variation in human induced pluripotent stem cells generated by nonintegrating plasmid expression
    • NISC Comparative Sequencing Program.
    • Cheng, L, Hansen, NF, Zhao, L, Du, Y, Zou, C, Donovan, FX et al.; NISC Comparative Sequencing Program. (2012). Low incidence of DNA sequence variation in human induced pluripotent stem cells generated by nonintegrating plasmid expression. Cell Stem Cell 10: 337-344.
    • (2012) Cell Stem Cell , vol.10 , pp. 337-344
    • Cheng, L.1    Hansen, N.F.2    Zhao, L.3    Du, Y.4    Zou, C.5    Donovan, F.X.6
  • 28
    • 84879116702 scopus 로고    scopus 로고
    • Efficient drug screening and gene correction for treating liver disease using patient-specific stem cells
    • Choi, SM, Kim, Y, Shim, JS, Park, JT, Wang, RH, Leach, SD et al. (2013). Efficient drug screening and gene correction for treating liver disease using patient-specific stem cells. Hepatology 57: 2458-2468.
    • (2013) Hepatology , vol.57 , pp. 2458-2468
    • Choi, S.M.1    Kim, Y.2    Shim, J.S.3    Park, J.T.4    Wang, R.H.5    Leach, S.D.6
  • 29
    • 84881460875 scopus 로고    scopus 로고
    • Expanded activity of dimer nucleases by combining ZFN and TALEN for genome editing
    • Yan, W, Smith, C and Cheng, L (2013). Expanded activity of dimer nucleases by combining ZFN and TALEN for genome editing. Sci Rep 3: 2376.
    • (2013) Sci Rep , vol.3 , pp. 2376
    • Yan, W.1    Smith, C.2    Cheng, L.3
  • 30
    • 30344473645 scopus 로고    scopus 로고
    • Mammalian gene targeting with designed zinc finger nucleases
    • Porteus, MH (2006). Mammalian gene targeting with designed zinc finger nucleases. Mol Ther 13: 438-446.
    • (2006) Mol Ther , vol.13 , pp. 438-446
    • Porteus, M.H.1
  • 31
    • 80054987997 scopus 로고    scopus 로고
    • Targeted gene correction of a1-antitrypsin deficiency in induced pluripotent stem cells
    • Yusa, K, Rashid, ST, Strick-Marchand, H, Varela, I, Liu, PQ, Paschon, DE et al. (2011). Targeted gene correction of a1-antitrypsin deficiency in induced pluripotent stem cells. Nature 478: 391-394.
    • (2011) Nature , vol.478 , pp. 391-394
    • Yusa, K.1    Rashid, S.T.2    Strick-Marchand, H.3    Varela, I.4    Liu, P.Q.5    Paschon, D.E.6
  • 32
    • 70450247528 scopus 로고    scopus 로고
    • Human-induced pluripotent stem cells from blood cells of healthy donors and patients with acquired blood disorders
    • Ye, Z, Zhan, H, Mali, P, Dowey, S, Williams, DM, Jang, YY et al. (2009). Human-induced pluripotent stem cells from blood cells of healthy donors and patients with acquired blood disorders. Blood 114: 5473-5480.
    • (2009) Blood , vol.114 , pp. 5473-5480
    • Ye, Z.1    Zhan, H.2    Mali, P.3    Dowey, S.4    Williams, D.M.5    Jang, Y.Y.6
  • 33
    • 80051899099 scopus 로고    scopus 로고
    • Reprogramming of EBV-immortalized B-lymphocyte cell lines into induced pluripotent stem cells
    • Choi, SM, Liu, H, Chaudhari, P, Kim, Y, Cheng, L, Feng, J et al. (2011). Reprogramming of EBV-immortalized B-lymphocyte cell lines into induced pluripotent stem cells. Blood 118: 1801-1805.
    • (2011) Blood , vol.118 , pp. 1801-1805
    • Choi, S.M.1    Liu, H.2    Chaudhari, P.3    Kim, Y.4    Cheng, L.5    Feng, J.6
  • 34
    • 84891820810 scopus 로고    scopus 로고
    • Differential sensitivity to JAK inhibitory drugs by isogenic human erythroblasts and hematopoietic progenitors generated from patient-specific induced pluripotent stem cells
    • Ye, Z, Liu, CF, Lanikova, L, Dowey, SN, He, C, Huang, X et al. (2014). Differential sensitivity to JAK inhibitory drugs by isogenic human erythroblasts and hematopoietic progenitors generated from patient-specific induced pluripotent stem cells. Stem Cells 32: 269-278.
    • (2014) Stem Cells , vol.32 , pp. 269-278
    • Ye, Z.1    Liu, C.F.2    Lanikova, L.3    Dowey, S.N.4    He, C.5    Huang, X.6
  • 35
    • 84875963894 scopus 로고    scopus 로고
    • Enhanced efficiency of human pluripotent stem cell genome editing through replacing TALENs with CRISPRs
    • Ding, Q, Regan, SN, Xia, Y, Oostrom, LA, Cowan, CA and Musunuru, K (2013). Enhanced efficiency of human pluripotent stem cell genome editing through replacing TALENs with CRISPRs. Cell Stem Cell 12: 393-394.
    • (2013) Cell Stem Cell , vol.12 , pp. 393-394
    • Ding, Q.1    Regan, S.N.2    Xia, Y.3    Oostrom, L.A.4    Cowan, C.A.5    Musunuru, K.6
  • 37
    • 79960833952 scopus 로고    scopus 로고
    • Generation of isogenic pluripotent stem cells differing exclusively at two early onset Parkinson point mutations
    • Soldner, F, Laganière, J, Cheng, AW, Hockemeyer, D, Gao, Q, Alagappan, R et al. (2011). Generation of isogenic pluripotent stem cells differing exclusively at two early onset Parkinson point mutations. Cell 146: 318-331.
    • (2011) Cell , vol.146 , pp. 318-331
    • Soldner, F.1    Laganière, J.2    Cheng, A.W.3    Hockemeyer, D.4    Gao, Q.5    Alagappan, R.6
  • 39
    • 84884288934 scopus 로고    scopus 로고
    • Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity
    • Ran, FA, Hsu, PD, Lin, CY, Gootenberg, JS, Konermann, S, Trevino, AE et al. (2013). Double nicking by RNA-guided CRISPR Cas9 for enhanced genome editing specificity. Cell 154: 1380-1389.
    • (2013) Cell , vol.154 , pp. 1380-1389
    • Ran, F.A.1    Hsu, P.D.2    Lin, C.Y.3    Gootenberg, J.S.4    Konermann, S.5    Trevino, A.E.6
  • 40
    • 84897954175 scopus 로고    scopus 로고
    • Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects
    • Shen, B, Zhang, W, Zhang, J, Zhou, J, Wang, J, Chen, L et al. (2014). Efficient genome modification by CRISPR-Cas9 nickase with minimal off-target effects. Nat Methods 11: 399-402.
    • (2014) Nat Methods , vol.11 , pp. 399-402
    • Shen, B.1    Zhang, W.2    Zhang, J.3    Zhou, J.4    Wang, J.5    Chen, L.6
  • 41
    • 84874613680 scopus 로고    scopus 로고
    • Obligate ligation-gated recombination (ObLiGaRe): Custom-designed nuclease-mediated targeted integration through nonhomologous end joining
    • Maresca, M, Lin, VG, Guo, N and Yang, Y (2013). Obligate ligation-gated recombination (ObLiGaRe): custom-designed nuclease-mediated targeted integration through nonhomologous end joining. Genome Res 23: 539-546.
    • (2013) Genome Res , vol.23 , pp. 539-546
    • Maresca, M.1    Lin, V.G.2    Guo, N.3    Yang, Y.4
  • 44
    • 84882993448 scopus 로고    scopus 로고
    • Scalable expansion of human induced pluripotent stem cells in the defined xeno-free E8 medium under adherent and suspension culture conditions
    • Wang, Y, Chou, BK, Dowey, S, He, C, Gerecht, S and Cheng, L (2013). Scalable expansion of human induced pluripotent stem cells in the defined xeno-free E8 medium under adherent and suspension culture conditions. Stem Cell Res 11: 1103-1116.
    • (2013) Stem Cell Res , vol.11 , pp. 1103-1116
    • Wang, Y.1    Chou, B.K.2    Dowey, S.3    He, C.4    Gerecht, S.5    Cheng, L.6
  • 45
    • 84873493550 scopus 로고    scopus 로고
    • Reyon, D, Khayter, C, Regan, MR, Joung, JK and Sander, JD (2012). Engineering designer transcription activator-like effector nucleases (TALENs) by REAL or REAL-Fast assembly. Curr Protoc Mol Biol Chapter 12: Unit 12.15.
    • (2012)
    • Reyon, D.1    Khayter, C.2    Regan, M.R.3    Joung, J.K.4    Sander, J.D.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.