-
1
-
-
0042470456
-
Positive and negative selection of T cells
-
Starr, T. K., Jameson, S. C. & Hogquist, K. A. Positive and negative selection of T cells. Annu. Rev. Immunol. 21, 139-176 (2003).
-
(2003)
Annu. Rev. Immunol.
, vol.21
, pp. 139-176
-
-
Starr, T.K.1
Jameson, S.C.2
Hogquist, K.A.3
-
2
-
-
0035122708
-
The shaping of the T cell repertoire
-
Correia-Neves, M., Waltzinger, C., Mathis, D. & Benoist, C. The shaping of the T cell repertoire. Immunity 14, 21-32 (2001).
-
(2001)
Immunity
, vol.14
, pp. 21-32
-
-
Correia-Neves, M.1
Waltzinger, C.2
Mathis, D.3
Benoist, C.4
-
3
-
-
33646181088
-
How TCRs bind MHCs, peptides, and coreceptors
-
Rudolph, M. G., Stanfield, R. L. & Wilson, I. A. How TCRs bind MHCs, peptides, and coreceptors. Annu. Rev. Immunol. 24, 419-466 (2006).
-
(2006)
Annu. Rev. Immunol.
, vol.24
, pp. 419-466
-
-
Rudolph, M.G.1
Stanfield, R.L.2
Wilson, I.A.3
-
4
-
-
58649114309
-
The molecular basis of TCR germline bias for MHC is surprisingly simple
-
Garcia, K. C., Adams, J. J., Feng, D. & Ely, L. K. The molecular basis of TCR germline bias for MHC is surprisingly simple. Nat. Immunol. 10, 143-147 (2009).
-
(2009)
Nat. Immunol.
, vol.10
, pp. 143-147
-
-
Garcia, K.C.1
Adams, J.J.2
Feng, D.3
Ely, L.K.4
-
5
-
-
0027215148
-
Transfer of putative complementarity-determining region loops of T cell receptor v domains confers toxin reactivity but not peptide/MHC specificity
-
Patten, P. A. et al. Transfer of putative complementarity-determining region loops of T cell receptor V domains confers toxin reactivity but not peptide/MHC specificity. J. Immunol. 150, 2281-2294 (1993).
-
(1993)
J. Immunol.
, vol.150
, pp. 2281-2294
-
-
Patten, P.A.1
-
6
-
-
80052677601
-
TCRs used in cancer gene therapy cross-react with MART-1/Melan-A tumor antigens via distinct mechanisms
-
Borbulevych, O. Y., Santhanagopolan, S. M., Hossain, M. & Baker, B. M. TCRs used in cancer gene therapy cross-react with MART-1/Melan-A tumor antigens via distinct mechanisms. J. Immunol. 187, 2453-2463 (2011).
-
(2011)
J. Immunol.
, vol.187
, pp. 2453-2463
-
-
Borbulevych, O.Y.1
Santhanagopolan, S.M.2
Hossain, M.3
Baker, B.M.4
-
7
-
-
70350438026
-
Germ line-governed recognition of a cancer epitope by an immunodominant human T-cell receptor
-
Cole, D. K. et al. Germ line-governed recognition of a cancer epitope by an immunodominant human T-cell receptor. J. Biol. Chem. 284, 27281-27289 (2009).
-
(2009)
J. Biol. Chem.
, vol.284
, pp. 27281-27289
-
-
Cole, D.K.1
-
8
-
-
0029855347
-
Structure of the complex between human T-cell receptor, viral peptide and HLA-A2
-
Garboczi, D. N. et al. Structure of the complex between human T-cell receptor, viral peptide and HLA-A2. Nature 384, 134-141 (1996).
-
(1996)
Nature
, vol.384
, pp. 134-141
-
-
Garboczi, D.N.1
-
9
-
-
77953742968
-
Hard wiring of T cell receptor specificity for the major histocompatibility complex is underpinned by TCR adaptability
-
Burrows, S. R. et al. Hard wiring of T cell receptor specificity for the major histocompatibility complex is underpinned by TCR adaptability. Proc. Natl Acad. Sci. USA 107, 10608-10613 (2010).
-
(2010)
Proc. Natl Acad. Sci. USA
, vol.107
, pp. 10608-10613
-
-
Burrows, S.R.1
-
10
-
-
34247346627
-
How much can a T-cell antigen receptor adapt to structurally distinct antigenic peptides?
-
Mazza, C. et al. How much can a T-cell antigen receptor adapt to structurally distinct antigenic peptides? EMBO J. 26, 1972-1983 (2007).
-
(2007)
EMBO J.
, vol.26
, pp. 1972-1983
-
-
Mazza, C.1
-
11
-
-
34548128306
-
Structural evidence for a germline-encoded T cell receptor-major histocompatibility complex interaction 'codon'
-
Feng, D., Bond, C. J., Ely, L. K., Maynard, J. & Garcia, K. C. Structural evidence for a germline-encoded T cell receptor-major histocompatibility complex interaction 'codon'. Nat. Immunol. 8, 975-983 (2007).
-
(2007)
Nat. Immunol.
, vol.8
, pp. 975-983
-
-
Feng, D.1
Bond, C.J.2
Ely, L.K.3
Maynard, J.4
Garcia, K.C.5
-
12
-
-
84866277299
-
Structural insights into the editing of germ-line-encoded interactions between T-cell receptor and MHC class II by v CDR3
-
Deng, L., Langley, R. J., Wang, Q., Topalian, S. L. & Mariuzza, R. A. Structural insights into the editing of germ-line-encoded interactions between T-cell receptor and MHC class II by V CDR3. Proc. Natl Acad. Sci. USA 109, 14960-14965 (2012).
-
(2012)
Proc. Natl Acad. Sci. USA
, vol.109
, pp. 14960-14965
-
-
Deng, L.1
Langley, R.J.2
Wang, Q.3
Topalian, S.L.4
Mariuzza, R.A.5
-
13
-
-
33947726614
-
How a single T cell receptor recognizes both self and foreign MHC
-
Colf, L. A. et al. How a single T cell receptor recognizes both self and foreign MHC. Cell 129, 135-146 (2007).
-
(2007)
Cell
, vol.129
, pp. 135-146
-
-
Colf, L.A.1
-
14
-
-
84905112393
-
T cell receptor bias for MHC: Co-evolution or co-receptors?
-
Rangarajan, S. & Mariuzza, R. A. T cell receptor bias for MHC: co-evolution or co-receptors? Cell. Mol. Life Sci. 71, 3059-3068 (2014).
-
(2014)
Cell. Mol. Life Sci.
, vol.71
, pp. 3059-3068
-
-
Rangarajan, S.1
Mariuzza, R.A.2
-
15
-
-
71749112218
-
T cell receptor cross-reactivity directed by antigendependent tuning of peptide-MHC molecular flexibility
-
Borbulevych, O. Y. et al. T cell receptor cross-reactivity directed by antigendependent tuning of peptide-MHC molecular flexibility. Immunity 31, 885-896 (2009).
-
(2009)
Immunity
, vol.31
, pp. 885-896
-
-
Borbulevych, O.Y.1
-
16
-
-
84886724138
-
The basis for limited specificity and MHC restriction in a T cell receptor interface
-
Piepenbrink, K. H., Blevins, S. J., Scott, D. R. & Baker, B. M. The basis for limited specificity and MHC restriction in a T cell receptor interface. Nat. Commun. 4, 1948 (2013).
-
(2013)
Nat. Commun.
, vol.4
, pp. 1948
-
-
Piepenbrink, K.H.1
Blevins, S.J.2
Scott, D.R.3
Baker, B.M.4
-
17
-
-
84897556607
-
TCR scanning of peptide/MHC through complementary matching of receptor and ligand molecular flexibility
-
Hawse, W. F. et al. TCR scanning of peptide/MHC through complementary matching of receptor and ligand molecular flexibility. J. Immunol. 192, 2885-2891 (2014).
-
(2014)
J. Immunol.
, vol.192
, pp. 2885-2891
-
-
Hawse, W.F.1
-
18
-
-
0034687706
-
Changing T cell specificity by retroviral T cell receptor display
-
Kessels, H. W., van Den Boom, M. D., Spits, H., Hooijberg, E. & Schumacher, T. N. Changing T cell specificity by retroviral T cell receptor display. Proc. Natl Acad. Sci. USA 97, 14578-14583 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 14578-14583
-
-
Kessels, H.W.1
Van Den-Boom, M.D.2
Spits, H.3
Hooijberg, E.4
Schumacher, T.N.5
-
19
-
-
0034624983
-
In vitro evolution of a T cell receptor with high affinity for peptide/MHC
-
Holler, P. et al. In vitro evolution of a T cell receptor with high affinity for peptide/MHC. Proc. Natl Acad. Sci. USA 97, 5387-5392 (2000).
-
(2000)
Proc. Natl Acad. Sci. USA
, vol.97
, pp. 5387-5392
-
-
Holler, P.1
-
20
-
-
0037234768
-
TCRs with high affinity for foreign pMHC show self-reactivity
-
Holler, P. D., Chlewicki, L. K. & Kranz, D. M. TCRs with high affinity for foreign pMHC show self-reactivity. Nat. Immunol. 4, 55-62 (2003).
-
(2003)
Nat. Immunol.
, vol.4
, pp. 55-62
-
-
Holler, P.D.1
Chlewicki, L.K.2
Kranz, D.M.3
-
21
-
-
21444445173
-
Directed evolution of human T-cell receptors with picomolar affinities by phage display
-
Li, Y. et al. Directed evolution of human T-cell receptors with picomolar affinities by phage display. Nat. Biotechnol. 23, 349-354 (2005).
-
(2005)
Nat. Biotechnol.
, vol.23
, pp. 349-354
-
-
Li, Y.1
-
22
-
-
33645498495
-
Directed evolution of human T cell receptor CDR2 residues by phage display dramatically enhances affinity for cognate peptide-MHC without increasing apparent cross-reactivity
-
Dunn, S. M. et al. Directed evolution of human T cell receptor CDR2 residues by phage display dramatically enhances affinity for cognate peptide-MHC without increasing apparent cross-reactivity. Protein Sci. 15, 710-721 (2006).
-
(2006)
Protein Sci.
, vol.15
, pp. 710-721
-
-
Dunn, S.M.1
-
23
-
-
57349118383
-
Control of HIV-1 immune escape by CD8 T cells expressing enhanced T-cell receptor
-
Varela-Rohena, A. et al. Control of HIV-1 immune escape by CD8 T cells expressing enhanced T-cell receptor. Nat. Med. 14, 1390-1395 (2008).
-
(2008)
Nat. Med.
, vol.14
, pp. 1390-1395
-
-
Varela-Rohena, A.1
-
24
-
-
84886728346
-
Plasticity in the contribution of T cell receptor variable region residues to binding of peptide-HLA-A2 complexes
-
Smith, S. N. et al. Plasticity in the contribution of T cell receptor variable region residues to binding of peptide-HLA-A2 complexes. J. Mol. Biol. 425, 4496-4507 (2013).
-
(2013)
J. Mol. Biol.
, vol.425
, pp. 4496-4507
-
-
Smith, S.N.1
-
25
-
-
84879588325
-
T-cell receptor specificity maintained by altered thermodynamics
-
Madura, F. et al. T-cell receptor specificity maintained by altered thermodynamics. J. Biol. Chem. 288, 18766-18775 (2013).
-
(2013)
J. Biol. Chem.
, vol.288
, pp. 18766-18775
-
-
Madura, F.1
-
26
-
-
12344322695
-
High-affinity, peptide-specific T cell receptors can be generated by mutations in CDR1, CDR2 or CDR3
-
Chlewicki, L. K., Holler, P. D., Monti, B. C., Clutter, M. R. & Kranz, D. M. High-affinity, peptide-specific T cell receptors can be generated by mutations in CDR1, CDR2 or CDR3. J. Mol. Biol. 346, 223-239 (2005).
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 223-239
-
-
Chlewicki, L.K.1
Holler, P.D.2
Monti, B.C.3
Clutter, M.R.4
Kranz, D.M.5
-
27
-
-
61449234107
-
Structure-based design of a T-cell receptor leads to nearly 100-fold improvement in binding affinity for pepMHC
-
Haidar, J. N. et al. Structure-based design of a T-cell receptor leads to nearly 100-fold improvement in binding affinity for pepMHC. Proteins 74, 948-960 (2009).
-
(2009)
Proteins
, vol.74
, pp. 948-960
-
-
Haidar, J.N.1
-
28
-
-
84862589122
-
Cutting edge: Evidence for a dynamically driven T cell signaling mechanism
-
Hawse, W. F. et al. Cutting edge: evidence for a dynamically driven T cell signaling mechanism. J. Immunol. 188, 5819-5823 (2012).
-
(2012)
J. Immunol.
, vol.188
, pp. 5819-5823
-
-
Hawse, W.F.1
-
29
-
-
84886003861
-
Structurebased, rational design of T cell receptors
-
Zoete, V., Irving, M., Ferber, M., Cuendet, M. A. & Michielin, O. Structurebased, rational design of T cell receptors. Front. Immunol. 4, 268 (2013).
-
(2013)
Front. Immunol.
, vol.4
, pp. 268
-
-
Zoete, V.1
Irving, M.2
Ferber, M.3
Cuendet, M.A.4
Michielin, O.5
-
30
-
-
84895758316
-
Computational design of the affinity and specificity of a therapeutic T cell receptor
-
Pierce, B. G. et al. Computational design of the affinity and specificity of a therapeutic T cell receptor. PLoS Comput. Biol. 10, e1003478 (2014).
-
(2014)
PLoS Comput. Biol.
, vol.10
, pp. e1003478
-
-
Pierce, B.G.1
-
31
-
-
0030033451
-
Analysis of the T-cell receptor repertoire of human T-cell leukemia virus type 1 (HTLV-1) Tax-specific CD8+ cytotoxic T lymphocytes from patients with HTLV-1-associated disease: Evidence for oligoclonal expansion
-
Utz, U., Banks, D., Jacobson, S. & Biddison, W. E. Analysis of the T-cell receptor repertoire of human T-cell leukemia virus type 1 (HTLV-1) Tax-specific CD8+ cytotoxic T lymphocytes from patients with HTLV-1-associated disease: evidence for oligoclonal expansion. J. Virol. 70, 843-851 (1996).
-
(1996)
J. Virol.
, vol.70
, pp. 843-851
-
-
Utz, U.1
Banks, D.2
Jacobson, S.3
Biddison, W.E.4
-
32
-
-
0033165928
-
Four A6-TCR/peptide/HLA-A2 structures that generate very different T cell signals are nearly identical
-
Ding, Y. H., Baker, B. M., Garboczi, D. N., Biddison, W. E. & Wiley, D. C. Four A6-TCR/peptide/HLA-A2 structures that generate very different T cell signals are nearly identical. Immunity 11, 45-56 (1999).
-
(1999)
Immunity
, vol.11
, pp. 45-56
-
-
Ding, Y.H.1
Baker, B.M.2
Garboczi, D.N.3
Biddison, W.E.4
Wiley, D.C.5
-
33
-
-
0035809315
-
Identification of a crucial energetic footprint on the alpha1 helix of human histocompatibility leukocyte antigen (HLA)-A2 that provides functional interactions for recognition by tax peptide/HLA-A2-specific T cell receptors
-
Baker, B. M., Turner, R. V., Gagnon, S. J., Wiley, D. C. & Biddison, W. E. Identification of a crucial energetic footprint on the alpha1 helix of human histocompatibility leukocyte antigen (HLA)-A2 that provides functional interactions for recognition by tax peptide/HLA-A2-specific T cell receptors. J. Exp. Med. 193, 551-562 (2001).
-
(2001)
J. Exp. Med.
, vol.193
, pp. 551-562
-
-
Baker, B.M.1
Turner, R.V.2
Gagnon, S.J.3
Wiley, D.C.4
Biddison, W.E.5
-
34
-
-
79952654605
-
Identification and engineering of human variable regions that allow expression of stable single-chain T cell receptors
-
Aggen, D. H. et al. Identification and engineering of human variable regions that allow expression of stable single-chain T cell receptors. Protein Eng. Des. Sel. 24, 361-372 (2011).
-
(2011)
Protein Eng. Des. Sel.
, vol.24
, pp. 361-372
-
-
Aggen, D.H.1
-
35
-
-
0028302028
-
Identification of the immunodominant peptides of the MART-1 human melanoma antigen recognized by the majority of HLA-A2-restricted tumor infiltrating lymphocytes
-
Kawakami, Y. et al. Identification of the immunodominant peptides of the MART-1 human melanoma antigen recognized by the majority of HLA-A2-restricted tumor infiltrating lymphocytes. J. Exp. Med. 180, 347-352 (1994).
-
(1994)
J. Exp. Med.
, vol.180
, pp. 347-352
-
-
Kawakami, Y.1
-
36
-
-
0031225690
-
Cytolytic T lymphocyte recognition of the immunodominant HLA-A∗0201-restricted Melan-A/MART-1 antigenic peptide in melanoma
-
Romero, P. et al. Cytolytic T lymphocyte recognition of the immunodominant HLA-A∗0201-restricted Melan-A/MART-1 antigenic peptide in melanoma. J. Immunol. 159, 2366-2374 (1997).
-
(1997)
J. Immunol.
, vol.159
, pp. 2366-2374
-
-
Romero, P.1
-
37
-
-
44749084527
-
WT1 peptide vaccine for the treatment of cancer
-
Oka, Y., Tsuboi, A., Oji, Y., Kawase, I. & Sugiyama, H. WT1 peptide vaccine for the treatment of cancer. Curr. Opin. Immunol. 20, 211-220 (2008).
-
(2008)
Curr. Opin. Immunol.
, vol.20
, pp. 211-220
-
-
Oka, Y.1
Tsuboi, A.2
Oji, Y.3
Kawase, I.4
Sugiyama, H.5
-
38
-
-
0037546979
-
Prevalent role of TCR alpha-chain in the selection of the preimmune repertoire specific for a human tumor-associated self-antigen
-
Dietrich, P.-Y. et al. Prevalent role of TCR alpha-chain in the selection of the preimmune repertoire specific for a human tumor-associated self-antigen. J. Immunol. 170, 5103-5109 (2003).
-
(2003)
J. Immunol.
, vol.170
, pp. 5103-5109
-
-
Dietrich, P.-Y.1
-
39
-
-
34548493428
-
Structures of MART-126/27-35 Peptide/HLA-A2 complexes reveal a remarkable disconnect between antigen structural homology and T cell recognition
-
Borbulevych, O. Y. et al. Structures of MART-126/27-35 Peptide/HLA-A2 complexes reveal a remarkable disconnect between antigen structural homology and T cell recognition. J. Mol. Biol. 372, 1123-1136 (2007).
-
(2007)
J. Mol. Biol.
, vol.372
, pp. 1123-1136
-
-
Borbulevych, O.Y.1
-
40
-
-
0032534581
-
Diversity of the fine specificity displayed by HLA-A∗0201-restricted CTL specific for the immunodominant Melan-A/MART-1 antigenic peptide
-
Valmori, D. et al. Diversity of the fine specificity displayed by HLA-A∗0201-restricted CTL specific for the immunodominant Melan-A/MART-1 antigenic peptide. J. Immunol. 161, 6956-6962 (1998).
-
(1998)
J. Immunol.
, vol.161
, pp. 6956-6962
-
-
Valmori, D.1
-
41
-
-
0033555613
-
A superagonist variant of peptide MART1/Melan A27-35 elicits anti-melanoma CD8+ T cells with enhanced functional characteristics: Implication for more effective immunotherapy
-
Rivoltini, L. et al. A superagonist variant of peptide MART1/Melan A27-35 elicits anti-melanoma CD8+ T cells with enhanced functional characteristics: implication for more effective immunotherapy. Cancer Res. 59, 301-306 (1999).
-
(1999)
Cancer Res.
, vol.59
, pp. 301-306
-
-
Rivoltini, L.1
-
42
-
-
0033545862
-
Selection of functional T cell receptor mutants from a yeast surface-display library
-
Kieke, M. C. et al. Selection of functional T cell receptor mutants from a yeast surface-display library. Proc. Natl Acad. Sci. USA 96, 5651-5656 (1999).
-
(1999)
Proc. Natl Acad. Sci. USA
, vol.96
, pp. 5651-5656
-
-
Kieke, M.C.1
-
43
-
-
30044449525
-
Class II-restricted T cell receptor engineered in vitro for higher affinity retains peptide specificity and function
-
Weber, K. S., Donermeyer, D. L., Allen, P. M. & Kranz, D. M. Class II-restricted T cell receptor engineered in vitro for higher affinity retains peptide specificity and function. Proc. Natl Acad. Sci. USA 102, 19033-19038 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 19033-19038
-
-
Weber, K.S.1
Donermeyer, D.L.2
Allen, P.M.3
Kranz, D.M.4
-
44
-
-
59249094502
-
Structural features of T cell receptor variable regions that enhance domain stability and enable expression as single-chain ValphaVbeta fragments
-
Richman, S. A. et al. Structural features of T cell receptor variable regions that enhance domain stability and enable expression as single-chain ValphaVbeta fragments. Mol. Immunol. 46, 902-916 (2009).
-
(2009)
Mol. Immunol.
, vol.46
, pp. 902-916
-
-
Richman, S.A.1
-
45
-
-
0037318058
-
Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library
-
Feldhaus, M. J. et al. Flow-cytometric isolation of human antibodies from a nonimmune Saccharomyces cerevisiae surface display library. Nat. Biotechnol. 21, 163-170 (2003).
-
(2003)
Nat. Biotechnol.
, vol.21
, pp. 163-170
-
-
Feldhaus, M.J.1
-
46
-
-
34648832245
-
Yeast surface display for protein engineering and characterization
-
Gai, S. A. & Wittrup, K. D. Yeast surface display for protein engineering and characterization. Curr. Opin. Struct. Biol. 17, 467-473 (2007).
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 467-473
-
-
Gai, S.A.1
Wittrup, K.D.2
-
47
-
-
84883761452
-
Increased peptide contacts govern high affinity binding of a modified TCR whilst maintaining a native pMHC docking mode
-
Cole, D. K. et al. Increased peptide contacts govern high affinity binding of a modified TCR whilst maintaining a native pMHC docking mode. Front. Immunol. 4, 168 (2013).
-
(2013)
Front. Immunol.
, vol.4
, pp. 168
-
-
Cole, D.K.1
-
48
-
-
42649112362
-
Evolutionarily conserved amino acids that control TCR-MHC interaction
-
Marrack, P., Scott-Browne, J. P., Dai, S., Gapin, L. & Kappler, J. W. Evolutionarily conserved amino acids that control TCR-MHC interaction. Annu. Rev. Immunol. 26, 171-203 (2008).
-
(2008)
Annu. Rev. Immunol.
, vol.26
, pp. 171-203
-
-
Marrack, P.1
Scott-Browne, J.P.2
Dai, S.3
Gapin, L.4
Kappler, J.W.5
-
49
-
-
0033136726
-
Peptide recognition by two HLA-A2/Tax11-19-specific T cell clones in relationship to their MHC/peptide/TCR crystal structures
-
Hausmann, S. et al. Peptide recognition by two HLA-A2/Tax11-19-specific T cell clones in relationship to their MHC/peptide/TCR crystal structures. J. Immunol. 162, 5389-5397 (1999).
-
(1999)
J. Immunol.
, vol.162
, pp. 5389-5397
-
-
Hausmann, S.1
-
50
-
-
82555168290
-
Disparate degrees of hypervariable loop flexibility control T-cell receptor cross-reactivity, specificity, and binding mechanism
-
Scott, D. R., Borbulevych, O. Y., Piepenbrink, K. H., Corcelli, S. A. & Baker, B. M. Disparate degrees of hypervariable loop flexibility control T-cell receptor cross-reactivity, specificity, and binding mechanism. J. Mol. Biol. 414, 385-400 (2011).
-
(2011)
J. Mol. Biol.
, vol.414
, pp. 385-400
-
-
Scott, D.R.1
Borbulevych, O.Y.2
Piepenbrink, K.H.3
Corcelli, S.A.4
Baker, B.M.5
-
51
-
-
33748809527
-
T cell receptor recognition via cooperative conformational plasticity
-
Gagnon, S. J. et al. T cell receptor recognition via cooperative conformational plasticity. J. Mol. Biol. 363, 228-243 (2006).
-
(2006)
J. Mol. Biol.
, vol.363
, pp. 228-243
-
-
Gagnon, S.J.1
-
52
-
-
84861128851
-
Epitope flexibility and dynamic footprint revealed by molecular dynamics of a pMHC-TCR complex
-
Reboul, C. F., Meyer, G. R., Porebski, B. T., Borg, N. A. & Buckle, A. M. Epitope flexibility and dynamic footprint revealed by molecular dynamics of a pMHC-TCR complex. PLoS Comput. Biol. 8, e1002404 (2012).
-
(2012)
PLoS Comput. Biol.
, vol.8
, pp. e1002404
-
-
Reboul, C.F.1
Meyer, G.R.2
Porebski, B.T.3
Borg, N.A.4
Buckle, A.M.5
-
53
-
-
22744441535
-
How the T cell repertoire becomes peptide and MHC specific
-
Huseby, E. S. et al. How the T cell repertoire becomes peptide and MHC specific. Cell 122, 247-260 (2005).
-
(2005)
Cell
, vol.122
, pp. 247-260
-
-
Huseby, E.S.1
-
54
-
-
84892621959
-
T cell immunodominance is dictated by the positively selecting self-peptide
-
Lo, W. L., Solomon, B. D., Donermeyer, D. L., Hsieh, C. S. & Allen, P. M. T cell immunodominance is dictated by the positively selecting self-peptide. Elife 3, e01457 (2014).
-
(2014)
Elife
, vol.3
, pp. e01457
-
-
Lo, W.L.1
Solomon, B.D.2
Donermeyer, D.L.3
Hsieh, C.S.4
Allen, P.M.5
-
55
-
-
34347266953
-
Generation of peptide-MHC class I complexes through UV-mediated ligand exchange
-
Rodenko, B. et al. Generation of peptide-MHC class I complexes through UV-mediated ligand exchange. Nat. Protoc. 1, 1120-1132 (2006).
-
(2006)
Nat. Protoc.
, vol.1
, pp. 1120-1132
-
-
Rodenko, B.1
-
56
-
-
32244442535
-
Design and use of conditional MHC class I ligands
-
Toebes, M. et al. Design and use of conditional MHC class I ligands. Nat. Med. 12, 246-251 (2006).
-
(2006)
Nat. Med.
, vol.12
, pp. 246-251
-
-
Toebes, M.1
-
57
-
-
0030589221
-
Assembly, specific binding, and crystallization of a human TCR-alphabeta with an antigenic Tax peptide from human T lymphotropic virus type 1 and the class I MHC molecule HLA-A2
-
Garboczi, D. N. et al. Assembly, specific binding, and crystallization of a human TCR-alphabeta with an antigenic Tax peptide from human T lymphotropic virus type 1 and the class I MHC molecule HLA-A2. J. Immunol. 157, 5403-5410 (1996).
-
(1996)
J. Immunol.
, vol.157
, pp. 5403-5410
-
-
Garboczi, D.N.1
-
58
-
-
77954289978
-
Rosetta Backrub-A web server for flexible backbone protein structure modeling and design
-
Lauck, F., Smith, C. A., Friedland, G. F., Humphris, E. L. & Kortemme, T. Rosetta Backrub-a web server for flexible backbone protein structure modeling and design. Nucleic Acids Res. 38, W569-W575 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. W569-W575
-
-
Lauck, F.1
Smith, C.A.2
Friedland, G.F.3
Humphris, E.L.4
Kortemme, T.5
-
59
-
-
45649084560
-
Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction
-
Smith, C. A. & Kortemme, T. Backrub-like backbone simulation recapitulates natural protein conformational variability and improves mutant side-chain prediction. J. Mol. Biol. 380, 742-756 (2008).
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 742-756
-
-
Smith, C.A.1
Kortemme, T.2
-
61
-
-
0030994634
-
Yeast surface display for screening combinatorial polypeptide libraries
-
Boder, E. T. & Wittrup, K. D. Yeast surface display for screening combinatorial polypeptide libraries. Nat. Biotechnol. 15, 553-557 (1997).
-
(1997)
Nat. Biotechnol.
, vol.15
, pp. 553-557
-
-
Boder, E.T.1
Wittrup, K.D.2
-
62
-
-
0033748716
-
Yeast surface display for directed evolution of protein expression, affinity, and stability
-
Boder, E. T. & Wittrup, K. D. Yeast surface display for directed evolution of protein expression, affinity, and stability. Methods Enzymol. 328, 430-444 (2000).
-
(2000)
Methods Enzymol.
, vol.328
, pp. 430-444
-
-
Boder, E.T.1
Wittrup, K.D.2
-
63
-
-
0024520745
-
Site-directed mutagenesis by overlap extension using the polymerase chain reaction
-
Ho, S. N., Hunt, H. D., Horton, R. M., Pullen, J. K. & Pease, L. R. Site-directed mutagenesis by overlap extension using the polymerase chain reaction. Gene 77, 51-59 (1989).
-
(1989)
Gene
, vol.77
, pp. 51-59
-
-
Ho, S.N.1
Hunt, H.D.2
Horton, R.M.3
Pullen, J.K.4
Pease, L.R.5
-
64
-
-
0035811034
-
Kinetics and thermodynamics of T cell receptor-autoantigen interactions in murine experimental autoimmune encephalomyelitis
-
Garcia, K. C., Radu, C. G., Ho, J., Ober, R. J. & Ward, E. S. Kinetics and thermodynamics of T cell receptor-autoantigen interactions in murine experimental autoimmune encephalomyelitis. Proc. Natl Acad. Sci. USA 98, 6818-6823 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 6818-6823
-
-
Garcia, K.C.1
Radu, C.G.2
Ho, J.3
Ober, R.J.4
Ward, E.S.5
-
65
-
-
12544253697
-
Two different T cell receptors use different thermodynamic strategies to recognize the same peptide/MHC ligand
-
Davis-Harrison, R. L., Armstrong, K. M. & Baker, B. M. Two different T cell receptors use different thermodynamic strategies to recognize the same peptide/MHC ligand. J. Mol. Biol. 346, 533-550 (2005).
-
(2005)
J. Mol. Biol.
, vol.346
, pp. 533-550
-
-
Davis-Harrison, R.L.1
Armstrong, K.M.2
Baker, B.M.3
-
66
-
-
0034660206
-
The structure and stability of an HLA-A∗0201/octameric tax peptide complex with an empty conserved peptide-N-terminal binding site
-
Khan, A. R., Baker, B. M., Ghosh, P., Biddison, W. E. & Wiley, D. C. The structure and stability of an HLA-A∗0201/octameric tax peptide complex with an empty conserved peptide-N-terminal binding site. J. Immunol. 164, 6398-6405 (2000).
-
(2000)
J. Immunol.
, vol.164
, pp. 6398-6405
-
-
Khan, A.R.1
Baker, B.M.2
Ghosh, P.3
Biddison, W.E.4
Wiley, D.C.5
-
67
-
-
0035884987
-
Crystal structures of two closely related but antigenically distinct HLA-A2/melanocyte-melanoma tumor-antigen peptide complexes
-
Sliz, P. et al. Crystal structures of two closely related but antigenically distinct HLA-A2/melanocyte-melanoma tumor-antigen peptide complexes. J. Immunol. 167, 3276-3284 (2001).
-
(2001)
J. Immunol.
, vol.167
, pp. 3276-3284
-
-
Sliz, P.1
-
68
-
-
77955516739
-
Structures of native and affinityenhanced WT1 epitopes bound to HLA-A∗0201: Implications for WT1-based cancer therapeutics
-
Borbulevych, O. Y., Do, P. & Baker, B. M. Structures of native and affinityenhanced WT1 epitopes bound to HLA-A∗0201: implications for WT1-based cancer therapeutics. Mol. Immunol. 47, 2519-2524 (2010).
-
(2010)
Mol. Immunol.
, vol.47
, pp. 2519-2524
-
-
Borbulevych, O.Y.1
Do, P.2
Baker, B.M.3
|