-
1
-
-
84865757142
-
Landscape of transcription in human cells
-
Djebali S, Davis CA, Merkel A, Dobin A, Lassmann T, Mortazavi A, Tanzer A, Lagarde J, Lin W, Schlesinger F, Xue C, Marinov GK, Khatun J, Williams BA, Zaleski C, Rozowsky J, Roder M, Kokocinski F, Abdelhamid RF, Alioto T, Antoshechkin I, Baer MT, Bar NS, Batut P, Bell K, Bell I, Chakrabortty S, Chen X, Chrast J, Curado J, Derrien T, Drenkow J, Dumais E, Dumais J, Duttagupta R, Falconnet E, Fastuca M, Fejes-Toth K, Ferreira P, Foissac S, Fullwood MJ, Gao H, Gonzalez D, Gordon A, Gunawardena H, Howald C, Jha S, Johnson R, Kapranov P, King B, et al. 2012. Landscape of transcription in human cells. Nature 489:101-108. http://dx.doi.org/10.1038/nature11233.
-
(2012)
Nature
, vol.489
, pp. 101-108
-
-
Djebali, S.1
Davis, C.A.2
Merkel, A.3
Dobin, A.4
Lassmann, T.5
Mortazavi, A.6
Tanzer, A.7
Lagarde, J.8
Lin, W.9
Schlesinger, F.10
Xue, C.11
Marinov, G.K.12
Khatun, J.13
Williams, B.A.14
Zaleski, C.15
Rozowsky, J.16
Roder, M.17
Kokocinski, F.18
Abdelhamid, R.F.19
Alioto, T.20
Antoshechkin, I.21
Baer, M.T.22
Bar, N.S.23
Batut, P.24
Bell, K.25
Bell, I.26
Chakrabortty, S.27
Chen, X.28
Chrast, J.29
Curado, J.30
Derrien, T.31
Drenkow, J.32
Dumais, E.33
Dumais, J.34
Duttagupta, R.35
Falconnet, E.36
Fastuca, M.37
Fejes-Toth, K.38
Ferreira, P.39
Foissac, S.40
Fullwood, M.J.41
Gao, H.42
Gonzalez, D.43
Gordon, A.44
Gunawardena, H.45
Howald, C.46
Jha, S.47
Johnson, R.48
Kapranov, P.49
King, B.50
more..
-
2
-
-
84864462544
-
A map of the cis-regulatory sequences in the mouse genome
-
Shen Y, Yue F, McCleary DF, Ye Z, Edsall L, Kuan S, Wagner U, Dixon J, Lee L, Lobanenkov VV, Ren B. 2012. A map of the cis-regulatory sequences in the mouse genome. Nature 488:116-120. http://dx.doi.org/10.1038/nature11243.
-
(2012)
Nature
, vol.488
, pp. 116-120
-
-
Shen, Y.1
Yue, F.2
McCleary, D.F.3
Ye, Z.4
Edsall, L.5
Kuan, S.6
Wagner, U.7
Dixon, J.8
Lee, L.9
Lobanenkov, V.V.10
Ren, B.11
-
3
-
-
84865249952
-
Transcription factors: from enhancer binding to developmental control
-
Spitz F, Furlong EEM. 2012. Transcription factors: from enhancer binding to developmental control. Nat Rev Genet 13:613-626. http://dx.doi.org/10.1038/nrg3207.
-
(2012)
Nat Rev Genet
, vol.13
, pp. 613-626
-
-
Spitz, F.1
Furlong, E.E.M.2
-
4
-
-
40749104852
-
An extended transcriptional network for pluripotency of embryonic stem cells
-
Kim J, Chu J, Shen X, Wang J, Orkin SH. 2008. An extended transcriptional network for pluripotency of embryonic stem cells. Cell 132:1049-1061. http://dx.doi.org/10.1016/j.cell.2008.02.039.
-
(2008)
Cell
, vol.132
, pp. 1049-1061
-
-
Kim, J.1
Chu, J.2
Shen, X.3
Wang, J.4
Orkin, S.H.5
-
5
-
-
29744447772
-
Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells
-
Meshorer E, Yellajoshula D, George E, Scambler PJ, Brown DT, Misteli T. 2006. Hyperdynamic plasticity of chromatin proteins in pluripotent embryonic stem cells. Dev Cell 10:105-116. http://dx.doi.org/10.1016/j.devcel.2005.10.017.
-
(2006)
Dev Cell
, vol.10
, pp. 105-116
-
-
Meshorer, E.1
Yellajoshula, D.2
George, E.3
Scambler, P.J.4
Brown, D.T.5
Misteli, T.6
-
6
-
-
84902184462
-
Reorganization of enhancer patterns in transition from naive to primed pluripotency
-
Buecker C, Srinivasan R, Wu Z, Calo E, Acampora D, Faial T, Simeone A, Tan M, Swigut T, Wysocka J. 2014. Reorganization of enhancer patterns in transition from naive to primed pluripotency. Cell Stem Cell 14:838-853. http://dx.doi.org/10.1016/j.stem.2014.04.003.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 838-853
-
-
Buecker, C.1
Srinivasan, R.2
Wu, Z.3
Calo, E.4
Acampora, D.5
Faial, T.6
Simeone, A.7
Tan, M.8
Swigut, T.9
Wysocka, J.10
-
7
-
-
84902160341
-
Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency
-
Factor DC, Corradin O, Zentner GE, Saiakhova A, Song L, Chenoweth JG, McKay RD, Crawford GE, Scacheri PC, Tesar PJ. 2014. Epigenomic comparison reveals activation of "seed" enhancers during transition from naive to primed pluripotency. Cell Stem Cell 14:854-863. http://dx.doi.org/10.1016/j.stem.2014.05.005.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 854-863
-
-
Factor, D.C.1
Corradin, O.2
Zentner, G.E.3
Saiakhova, A.4
Song, L.5
Chenoweth, J.G.6
McKay, R.D.7
Crawford, G.E.8
Scacheri, P.C.9
Tesar, P.J.10
-
8
-
-
84876216563
-
Master transcription factors and mediator establish super-enhancers at key cell identity genes
-
Whyte WA, Orlando DA, Hnisz D, Abraham BJ, Lin CY, Kagey MH, Rahl PB, Lee TI, Young RA. 2013. Master transcription factors and mediator establish super-enhancers at key cell identity genes. Cell 153:307-319. http://dx.doi.org/10.1016/j.cell.2013.03.035.
-
(2013)
Cell
, vol.153
, pp. 307-319
-
-
Whyte, W.A.1
Orlando, D.A.2
Hnisz, D.3
Abraham, B.J.4
Lin, C.Y.5
Kagey, M.H.6
Rahl, P.B.7
Lee, T.I.8
Young, R.A.9
-
9
-
-
80052495940
-
Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA
-
He Y-F, Li B-Z, Li Z, Liu P, Wang Y, Tang Q, Ding J, Jia Y, Chen Z, Li L, Sun Y, Li X, Dai Q, Song C-X, Zhang K, He C, Xu G-L. 2011. Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA. Science 333:1303-1307. http://dx.doi.org/10.1126/science.1210944.
-
(2011)
Science
, vol.333
, pp. 1303-1307
-
-
He, Y.-F.1
Li, B.-Z.2
Li, Z.3
Liu, P.4
Wang, Y.5
Tang, Q.6
Ding, J.7
Jia, Y.8
Chen, Z.9
Li, L.10
Sun, Y.11
Li, X.12
Dai, Q.13
Song, C.-X.14
Zhang, K.15
He, C.16
Xu, G.-L.17
-
10
-
-
80052461558
-
Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine
-
Ito S, Shen L, Dai Q, Wu SC, Collins LB, Swenberg JA, He C, Zhang Y. 2011. Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine. Science 333:1300-1303. http://dx.doi.org/10.1126/science.1210597.
-
(2011)
Science
, vol.333
, pp. 1300-1303
-
-
Ito, S.1
Shen, L.2
Dai, Q.3
Wu, S.C.4
Collins, L.B.5
Swenberg, J.A.6
He, C.7
Zhang, Y.8
-
11
-
-
66149146320
-
Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1
-
Tahiliani M, Koh KP, Shen Y, Pastor WA, Bandukwala H, Brudno Y, Agarwal S, Iyer LM, Liu DR, Aravind L, Rao A. 2009. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1. Science 324:930-935. http://dx.doi.org/10.1126/science.1170116.
-
(2009)
Science
, vol.324
, pp. 930-935
-
-
Tahiliani, M.1
Koh, K.P.2
Shen, Y.3
Pastor, W.A.4
Bandukwala, H.5
Brudno, Y.6
Agarwal, S.7
Iyer, L.M.8
Liu, D.R.9
Aravind, L.10
Rao, A.11
-
12
-
-
34249279527
-
Stability and flexibility of epigenetic gene regulation in mammalian development
-
Reik W. 2007. Stability and flexibility of epigenetic gene regulation in mammalian development. Nature 447:425-432. http://dx.doi.org/10.1038/nature05918.
-
(2007)
Nature
, vol.447
, pp. 425-432
-
-
Reik, W.1
-
13
-
-
79551587102
-
Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells
-
Koh KP, Yabuuchi A, Rao S, Huang Y, Cunniff K, Nardone J, Laiho A, Tahiliani M, Sommer CA, Mostoslavsky G, Lahesmaa R, Orkin SH, Rodig SJ, Daley GQ, Rao A. 2011. Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells. Cell Stem Cell 8:200-213. http://dx.doi.org/10.1016/j.stem.2011.01.008.
-
(2011)
Cell Stem Cell
, vol.8
, pp. 200-213
-
-
Koh, K.P.1
Yabuuchi, A.2
Rao, S.3
Huang, Y.4
Cunniff, K.5
Nardone, J.6
Laiho, A.7
Tahiliani, M.8
Sommer, C.A.9
Mostoslavsky, G.10
Lahesmaa, R.11
Orkin, S.H.12
Rodig, S.J.13
Daley, G.Q.14
Rao, A.15
-
14
-
-
84904413135
-
TET2 deficiency inhibits mesoderm and hematopoietic differentiation in human embryonic stem cells
-
Langlois T, da Costa Reis Monte-Mor B, Lenglet G, Droin N, Marty C, Le Couedic JP, Almire C, Auger N, Mercher T, Delhommeau F, Christensen J, Helin K, Debili N, Fuks F, Bernard OA, Solary E, Vainchenker W, Plo I. 2014. TET2 deficiency inhibits mesoderm and hematopoietic differentiation in human embryonic stem cells. Stem Cells 32:2084-2097. http://dx.doi.org/10.1002/stem.1718.
-
(2014)
Stem Cells
, vol.32
, pp. 2084-2097
-
-
Langlois, T.1
da Costa Reis Monte-Mor, B.2
Lenglet, G.3
Droin, N.4
Marty, C.5
Le Couedic, J.P.6
Almire, C.7
Auger, N.8
Mercher, T.9
Delhommeau, F.10
Christensen, J.11
Helin, K.12
Debili, N.13
Fuks, F.14
Bernard, O.A.15
Solary, E.16
Vainchenker, W.17
Plo, I.18
-
15
-
-
84872770694
-
Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine
-
Hackett JA, Sengupta R, Zylicz JJ, Murakami K, Lee C, Down TA, Surani MA. 2013. Germline DNA demethylation dynamics and imprint erasure through 5-hydroxymethylcytosine. Science 339:448-452. http://dx.doi.org/10.1126/science.1229277.
-
(2013)
Science
, vol.339
, pp. 448-452
-
-
Hackett, J.A.1
Sengupta, R.2
Zylicz, J.J.3
Murakami, K.4
Lee, C.5
Down, T.A.6
Surani, M.A.7
-
16
-
-
84875949201
-
Stage-specific roles for Tet1 and Tet2 in DNA demethylation in primordial germ cells
-
Vincent JJ, Huang Y, Chen PY, Feng S, Calvopina JH, Nee K, Lee SA, Le T, Yoon AJ, Faull K, Fan G, Rao A, Jacobsen SE, Pellegrini M, Clark AT. 2013. Stage-specific roles for Tet1 and Tet2 in DNA demethylation in primordial germ cells. Cell Stem Cell 12:470-478. http://dx.doi.org/10.1016/j.stem.2013.01.016.
-
(2013)
Cell Stem Cell
, vol.12
, pp. 470-478
-
-
Vincent, J.J.1
Huang, Y.2
Chen, P.Y.3
Feng, S.4
Calvopina, J.H.5
Nee, K.6
Lee, S.A.7
Le, T.8
Yoon, A.J.9
Faull, K.10
Fan, G.11
Rao, A.12
Jacobsen, S.E.13
Pellegrini, M.14
Clark, A.T.15
-
17
-
-
84873707539
-
Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development
-
Dawlaty MM, Breiling A, Le T, Raddatz G, Barrasa MI, Cheng AW, Gao Q, Powell BE, Li Z, Xu M, Faull KF, Lyko F, Jaenisch R. 2013. Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development. Dev Cell 24:310-323. http://dx.doi.org/10.1016/j.devcel.2012.12.015.
-
(2013)
Dev Cell
, vol.24
, pp. 310-323
-
-
Dawlaty, M.M.1
Breiling, A.2
Le, T.3
Raddatz, G.4
Barrasa, M.I.5
Cheng, A.W.6
Gao, Q.7
Powell, B.E.8
Li, Z.9
Xu, M.10
Faull, K.F.11
Lyko, F.12
Jaenisch, R.13
-
18
-
-
84890568163
-
Role of Tet1 in erasure of genomic imprinting
-
Yamaguchi S, Shen L, Liu Y, Sendler D, Zhang Y. 2013. Role of Tet1 in erasure of genomic imprinting. Nature 504:460-464. http://dx.doi.org/10.1038/nature12805.
-
(2013)
Nature
, vol.504
, pp. 460-464
-
-
Yamaguchi, S.1
Shen, L.2
Liu, Y.3
Sendler, D.4
Zhang, Y.5
-
19
-
-
84875370281
-
NANOG-dependent function of TET1 and TET2 in establishment of pluripotency
-
Costa Y, Ding J, Theunissen TW, Faiola F, Hore TA, Shliaha PV, Fidalgo M, Saunders A, Lawrence M, Dietmann S, Das S, Levasseur DN, Li Z, Xu M, Reik W, Silva JC, Wang J. 2013. NANOG-dependent function of TET1 and TET2 in establishment of pluripotency. Nature 495:370-374. http://dx.doi.org/10.1038/nature11925.
-
(2013)
Nature
, vol.495
, pp. 370-374
-
-
Costa, Y.1
Ding, J.2
Theunissen, T.W.3
Faiola, F.4
Hore, T.A.5
Shliaha, P.V.6
Fidalgo, M.7
Saunders, A.8
Lawrence, M.9
Dietmann, S.10
Das, S.11
Levasseur, D.N.12
Li, Z.13
Xu, M.14
Reik, W.15
Silva, J.C.16
Wang, J.17
-
20
-
-
84897989106
-
Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming
-
Hu X, Zhang L, Mao SQ, Li Z, Chen J, Zhang RR, Wu HP, Gao J, Guo F, Liu W, Xu GF, Dai HQ, Shi YG, Li X, Hu B, Tang F, Pei D, Xu GL. 2014. Tet and TDG mediate DNA demethylation essential for mesenchymal-to-epithelial transition in somatic cell reprogramming. Cell Stem Cell 14:512-522. http://dx.doi.org/10.1016/j.stem.2014.01.001.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 512-522
-
-
Hu, X.1
Zhang, L.2
Mao, S.Q.3
Li, Z.4
Chen, J.5
Zhang, R.R.6
Wu, H.P.7
Gao, J.8
Guo, F.9
Liu, W.10
Xu, G.F.11
Dai, H.Q.12
Shi, Y.G.13
Li, X.14
Hu, B.15
Tang, F.16
Pei, D.17
Xu, G.L.18
-
21
-
-
0037350661
-
TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23)
-
Lorsbach RB, Moore J, Mathew S, Raimondi SC, Mukatira ST, Downing JR. 2003. TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23). Leukemia 17:637-641. http://dx.doi.org/10.1038/sj.leu.2402834.
-
(2003)
Leukemia
, vol.17
, pp. 637-641
-
-
Lorsbach, R.B.1
Moore, J.2
Mathew, S.3
Raimondi, S.C.4
Mukatira, S.T.5
Downing, J.R.6
-
22
-
-
80053348585
-
The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes
-
Gu TP, Guo F, Yang H, Wu HP, Xu GF, Liu W, Xie ZG, Shi L, He X, Jin SG, Iqbal K, Shi YG, Deng Z, Szabo PE, Pfeifer GP, Li J, Xu GL. 2011. The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes. Nature 477:606-610. http://dx.doi.org/10.1038/nature10443.
-
(2011)
Nature
, vol.477
, pp. 606-610
-
-
Gu, T.P.1
Guo, F.2
Yang, H.3
Wu, H.P.4
Xu, G.F.5
Liu, W.6
Xie, Z.G.7
Shi, L.8
He, X.9
Jin, S.G.10
Iqbal, K.11
Shi, Y.G.12
Deng, Z.13
Szabo, P.E.14
Pfeifer, G.P.15
Li, J.16
Xu, G.L.17
-
23
-
-
84866908544
-
TET1 suppresses cancer invasion by activating the tissue inhibitors of metalloproteinases
-
Hsu C-H, Peng K-L, Kang M-L, Chen Y-R, Yang Y-C, Tsai C-H, Chu C-S, Jeng Y-M, Chen Y-T, Lin F-M, Huang H-D, Lu Y-Y, Teng Y-C, Lin S-T, Lin R-K, Tang F-M, Lee S-B, Hsu HM, Yu J-C, Hsiao P-W, Juan L-J. 2012. TET1 suppresses cancer invasion by activating the tissue inhibitors of metalloproteinases. Cell Rep 2:568-579. http://dx.doi.org/10.1016/j.celrep.2012.08.030.
-
(2012)
Cell Rep
, vol.2
, pp. 568-579
-
-
Hsu, C.-H.1
Peng, K.-L.2
Kang, M.-L.3
Chen, Y.-R.4
Yang, Y.-C.5
Tsai, C.-H.6
Chu, C.-S.7
Jeng, Y.-M.8
Chen, Y.-T.9
Lin, F.-M.10
Huang, H.-D.11
Lu, Y.-Y.12
Teng, Y.-C.13
Lin, S.-T.14
Lin, R.-K.15
Tang, F.-M.16
Lee, S.-B.17
Hsu, H.M.18
Yu, J.-C.19
Hsiao, P.-W.20
Juan, L.-J.21
more..
-
24
-
-
84866419591
-
Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma
-
Lian CG, Xu Y, Ceol C, Wu F, Larson A, Dresser K, Xu W, Tan L, Hu Y, Zhan Q, Lee CW, Hu D, Lian BQ, Kleffel S, Yang Y, Neiswender J, Khorasani AJ, Fang R, Lezcano C, Duncan LM, Scolyer RA, Thompson JF, Kakavand H, Houvras Y, Zon LI, Mihm MC, Jr, Kaiser UB, Schatton T, Woda BA, Murphy GF, Shi YG. 2012. Loss of 5-hydroxymethylcytosine is an epigenetic hallmark of melanoma. Cell 150:1135-1146. http://dx.doi.org/10.1016/j.cell.2012.07.033.
-
(2012)
Cell
, vol.150
, pp. 1135-1146
-
-
Lian, C.G.1
Xu, Y.2
Ceol, C.3
Wu, F.4
Larson, A.5
Dresser, K.6
Xu, W.7
Tan, L.8
Hu, Y.9
Zhan, Q.10
Lee, C.W.11
Hu, D.12
Lian, B.Q.13
Kleffel, S.14
Yang, Y.15
Neiswender, J.16
Khorasani, A.J.17
Fang, R.18
Lezcano, C.19
Duncan, L.M.20
Scolyer, R.A.21
Thompson, J.F.22
Kakavand, H.23
Houvras, Y.24
Zon, L.I.25
Mihm Jr, M.C.26
Kaiser, U.B.27
Schatton, T.28
Woda, B.A.29
Murphy, G.F.30
Shi, Y.G.31
more..
-
25
-
-
84878388525
-
Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells
-
Wu Y, Guo Z, Liu Y, Tang B, Wang Y, Yang L, Du J, Zhang Y. 2013. Oct4 and the small molecule inhibitor, SC1, regulates Tet2 expression in mouse embryonic stem cells. Mol Biol Rep 40:2897-2906. http://dx.doi.org/10.1007/s11033-012-2305-5.
-
(2013)
Mol Biol Rep
, vol.40
, pp. 2897-2906
-
-
Wu, Y.1
Guo, Z.2
Liu, Y.3
Tang, B.4
Wang, Y.5
Yang, L.6
Du, J.7
Zhang, Y.8
-
26
-
-
77950981972
-
Nuclear transfer-derived epiblast stem cells are transcriptionally and epigenetically distinguishable from their fertilizedderived counterparts
-
Maruotti J, Dai XP, Brochard V, Jouneau L, Liu J, Bonnet-Garnier A, Jammes H, Vallier L, Brons IG, Pedersen R, Renard JP, Zhou Q, Jouneau A. 2010. Nuclear transfer-derived epiblast stem cells are transcriptionally and epigenetically distinguishable from their fertilizedderived counterparts. Stem Cells 28:743-752. http://dx.doi.org/10.1002/stem.400.
-
(2010)
Stem Cells
, vol.28
, pp. 743-752
-
-
Maruotti, J.1
Dai, X.P.2
Brochard, V.3
Jouneau, L.4
Liu, J.5
Bonnet-Garnier, A.6
Jammes, H.7
Vallier, L.8
Brons, I.G.9
Pedersen, R.10
Renard, J.P.11
Zhou, Q.12
Jouneau, A.13
-
27
-
-
84888790012
-
Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions
-
Pulakanti K, Pinello L, Stelloh C, Blinka S, Allred J, Milanovich S, Kiblawi S, Peterson J, Wang A, Yuan GC, Rao S. 2013. Enhancer transcribed RNAs arise from hypomethylated, Tet-occupied genomic regions. Epigenetics 8:1303-1320. http://dx.doi.org/10.4161/epi.26597.
-
(2013)
Epigenetics
, vol.8
, pp. 1303-1320
-
-
Pulakanti, K.1
Pinello, L.2
Stelloh, C.3
Blinka, S.4
Allred, J.5
Milanovich, S.6
Kiblawi, S.7
Peterson, J.8
Wang, A.9
Yuan, G.C.10
Rao, S.11
-
28
-
-
21744444920
-
Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4/Sox2 complex in embryonic stem cells
-
Chew JL, Loh YH, Zhang W, Chen X, Tam WL, Yeap LS, Li P, Ang YS, Lim B, Robson P, Ng HH. 2005. Reciprocal transcriptional regulation of Pou5f1 and Sox2 via the Oct4/Sox2 complex in embryonic stem cells. Mol Cell Biol 25:6031-6046. http://dx.doi.org/10.1128/MCB.25.14.6031-6046.2005.
-
(2005)
Mol Cell Biol
, vol.25
, pp. 6031-6046
-
-
Chew, J.L.1
Loh, Y.H.2
Zhang, W.3
Chen, X.4
Tam, W.L.5
Yeap, L.S.6
Li, P.7
Ang, Y.S.8
Lim, B.9
Robson, P.10
Ng, H.H.11
-
29
-
-
77951920690
-
c-Myc regulates transcriptional pause release
-
Rahl PB, Lin CY, Seila AC, Flynn RA, McCuine S, Burge CB, Sharp PA, Young RA. 2010. c-Myc regulates transcriptional pause release. Cell 141:432-445. http://dx.doi.org/10.1016/j.cell.2010.03.030.
-
(2010)
Cell
, vol.141
, pp. 432-445
-
-
Rahl, P.B.1
Lin, C.Y.2
Seila, A.C.3
Flynn, R.A.4
McCuine, S.5
Burge, C.B.6
Sharp, P.A.7
Young, R.A.8
-
30
-
-
34447098370
-
A chromatin landmark and transcription initiation at most promoters in human cells
-
Guenther MG, Levine SS, Boyer LA, Jaenisch R, Young RA. 2007. A chromatin landmark and transcription initiation at most promoters in human cells. Cell 130:77-88. http://dx.doi.org/10.1016/j.cell.2007.05.042.
-
(2007)
Cell
, vol.130
, pp. 77-88
-
-
Guenther, M.G.1
Levine, S.S.2
Boyer, L.A.3
Jaenisch, R.4
Young, R.A.5
-
31
-
-
44349170450
-
The ground state of embryonic stem cell selfrenewal
-
Ying QL, Wray J, Nichols J, Batlle-Morera L, Doble B, Woodgett J, Cohen P, Smith A. 2008. The ground state of embryonic stem cell selfrenewal. Nature 453:519-523. http://dx.doi.org/10.1038/nature06968.
-
(2008)
Nature
, vol.453
, pp. 519-523
-
-
Ying, Q.L.1
Wray, J.2
Nichols, J.3
Batlle-Morera, L.4
Doble, B.5
Woodgett, J.6
Cohen, P.7
Smith, A.8
-
32
-
-
84884164554
-
FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency
-
Ficz G, Hore TA, Santos F, Lee HJ, Dean W, Arand J, Krueger F, Oxley D, Paul Y-L, Walter J, Cook SJ, Andrews S, Branco MR, Reik W. 2013. FGF signaling inhibition in ESCs drives rapid genome-wide demethylation to the epigenetic ground state of pluripotency. Cell Stem Cell 13:351-359. http://dx.doi.org/10.1016/j.stem.2013.06.004.
-
(2013)
Cell Stem Cell
, vol.13
, pp. 351-359
-
-
Ficz, G.1
Hore, T.A.2
Santos, F.3
Lee, H.J.4
Dean, W.5
Arand, J.6
Krueger, F.7
Oxley, D.8
Paul, Y.-L.9
Walter, J.10
Cook, S.J.11
Andrews, S.12
Branco, M.R.13
Reik, W.14
-
33
-
-
84884133672
-
Wholegenome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells
-
Habibi E, Brinkman AB, Arand J, Kroeze LI, Kerstens HH, Matarese F, Lepikhov K, Gut M, Brun-Heath I, Hubner NC, Benedetti R, Altucci L, Jansen JH, Walter J, Gut IG, Marks H, Stunnenberg HG. 2013. Wholegenome bisulfite sequencing of two distinct interconvertible DNA methylomes of mouse embryonic stem cells. Cell Stem Cell 13:360-369. http://dx.doi.org/10.1016/j.stem.2013.06.002.
-
(2013)
Cell Stem Cell
, vol.13
, pp. 360-369
-
-
Habibi, E.1
Brinkman, A.B.2
Arand, J.3
Kroeze, L.I.4
Kerstens, H.H.5
Matarese, F.6
Lepikhov, K.7
Gut, M.8
Brun-Heath, I.9
Hubner, N.C.10
Benedetti, R.11
Altucci, L.12
Jansen, J.H.13
Walter, J.14
Gut, I.G.15
Marks, H.16
Stunnenberg, H.G.17
-
34
-
-
84890963403
-
Synergistic mechanisms of DNA demethylation during transition to ground-state pluripotency
-
Hackett JA, Dietmann S, Murakami K, Down TA, Leitch HG, Surani MA. 2013. Synergistic mechanisms of DNA demethylation during transition to ground-state pluripotency. Stem Cell Rep 1:518-531. http://dx.doi.org/10.1016/j.stemcr.2013.11.010.
-
(2013)
Stem Cell Rep
, vol.1
, pp. 518-531
-
-
Hackett, J.A.1
Dietmann, S.2
Murakami, K.3
Down, T.A.4
Leitch, H.G.5
Surani, M.A.6
-
35
-
-
80052022935
-
Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells
-
Hayashi K, Ohta H, Kurimoto K, Aramaki S, Saitou M. 2011. Reconstitution of the mouse germ cell specification pathway in culture by pluripotent stem cells. Cell 146:519-532. http://dx.doi.org/10.1016/j.cell.2011.06.052.
-
(2011)
Cell
, vol.146
, pp. 519-532
-
-
Hayashi, K.1
Ohta, H.2
Kurimoto, K.3
Aramaki, S.4
Saitou, M.5
-
36
-
-
84891747616
-
The transcriptional and functional properties of mouse epiblast stem cells resemble the anterior primitive streak
-
Kojima Y, Kaufman-Francis K, Studdert JB, Steiner KA, Power MD, Loebel DA, Jones V, Hor A, de Alencastro G, Logan GJ, Teber ET, Tam OH, Stutz MD, Alexander IE, Pickett HA, Tam PP. 2014. The transcriptional and functional properties of mouse epiblast stem cells resemble the anterior primitive streak. Cell Stem Cell 14:107-120. http://dx.doi.org/10.1016/j.stem.2013.09.014.
-
(2014)
Cell Stem Cell
, vol.14
, pp. 107-120
-
-
Kojima, Y.1
Kaufman-Francis, K.2
Studdert, J.B.3
Steiner, K.A.4
Power, M.D.5
Loebel, D.A.6
Jones, V.7
Hor, A.8
de Alencastro, G.9
Logan, G.J.10
Teber, E.T.11
Tam, O.H.12
Stutz, M.D.13
Alexander, I.E.14
Pickett, H.A.15
Tam, P.P.16
-
37
-
-
77956189495
-
Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification
-
Ito S, D'Alessio AC, Taranova OV, Hong K, Sowers LC, Zhang Y. 2010. Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification. Nature 466:1129-1133. http://dx.doi.org/10.1038/nature09303.
-
(2010)
Nature
, vol.466
, pp. 1129-1133
-
-
Ito, S.1
D'Alessio, A.C.2
Taranova, O.V.3
Hong, K.4
Sowers, L.C.5
Zhang, Y.6
-
38
-
-
78049401678
-
Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA
-
Szwagierczak A, Bultmann S, Schmidt CS, Spada F, Leonhardt H. 2010. Sensitive enzymatic quantification of 5-hydroxymethylcytosine in genomic DNA. Nucleic Acids Res 38:e181. http://dx.doi.org/10.1093/nar/gkq684.
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Szwagierczak, A.1
Bultmann, S.2
Schmidt, C.S.3
Spada, F.4
Leonhardt, H.5
-
39
-
-
78650758676
-
Histone H3K27ac separates active from poised enhancers and predicts developmental state
-
Creyghton MP, Cheng AW, Welstead GG, Kooistra T, Carey BW, Steine EJ, Hanna J, Lodato MA, Frampton GM, Sharp PA, Boyer LA, Young RA, Jaenisch R. 2010. Histone H3K27ac separates active from poised enhancers and predicts developmental state. Proc Natl Acad Sci U S A 107:21931-21936. http://dx.doi.org/10.1073/pnas.1016071107.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 21931-21936
-
-
Creyghton, M.P.1
Cheng, A.W.2
Welstead, G.G.3
Kooistra, T.4
Carey, B.W.5
Steine, E.J.6
Hanna, J.7
Lodato, M.A.8
Frampton, G.M.9
Sharp, P.A.10
Boyer, L.A.11
Young, R.A.12
Jaenisch, R.13
-
40
-
-
79951516056
-
A unique chromatin signature uncovers early developmental enhancers in humans
-
Rada-Iglesias A, Bajpai R, Swigut T, Brugmann SA, Flynn RA, Wysocka J. 2011. A unique chromatin signature uncovers early developmental enhancers in humans. Nature 470:279-283. http://dx.doi.org/10.1038/nature09692.
-
(2011)
Nature
, vol.470
, pp. 279-283
-
-
Rada-Iglesias, A.1
Bajpai, R.2
Swigut, T.3
Brugmann, S.A.4
Flynn, R.A.5
Wysocka, J.6
-
41
-
-
84868103289
-
Tet2 facilitates the derepression of myeloid target genes during CEBPalpha-induced transdifferentiation of pre-B cells
-
Kallin EM, Rodriguez-Ubreva J, Christensen J, Cimmino L, Aifantis I, Helin K, Ballestar E, Graf T. 2012. Tet2 facilitates the derepression of myeloid target genes during CEBPalpha-induced transdifferentiation of pre-B cells. Mol Cell 48:266-276. http://dx.doi.org/10.1016/j.molcel.2012.08.007.
-
(2012)
Mol Cell
, vol.48
, pp. 266-276
-
-
Kallin, E.M.1
Rodriguez-Ubreva, J.2
Christensen, J.3
Cimmino, L.4
Aifantis, I.5
Helin, K.6
Ballestar, E.7
Graf, T.8
-
42
-
-
0032797827
-
The gene for the embryonic stem cell coactivator UTF1 carries a regulatory element which selectively interacts with a complex composed of Oct-3/4 and Sox-2
-
Nishimoto M, Fukushima A, Okuda A, Muramatsu M. 1999. The gene for the embryonic stem cell coactivator UTF1 carries a regulatory element which selectively interacts with a complex composed of Oct-3/4 and Sox-2. Mol Cell Biol 19:5453-5465.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 5453-5465
-
-
Nishimoto, M.1
Fukushima, A.2
Okuda, A.3
Muramatsu, M.4
-
43
-
-
79956292024
-
Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells
-
Wu H, D'Alessio AC, Ito S, Xia K, Wang Z, Cui K, Zhao K, Sun YE, Zhang Y. 2011. Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells. Nature 473:389-393. http://dx.doi.org/10.1038/nature09934.
-
(2011)
Nature
, vol.473
, pp. 389-393
-
-
Wu, H.1
D'Alessio, A.C.2
Ito, S.3
Xia, K.4
Wang, Z.5
Cui, K.6
Zhao, K.7
Sun, Y.E.8
Zhang, Y.9
-
44
-
-
84865755978
-
The accessible chromatin landscape of the human genome
-
Thurman RE, Rynes E, Humbert R, Vierstra J, Maurano MT, Haugen E, Sheffield NC, Stergachis AB, Wang H, Vernot B, Garg K, John S, Sandstrom R, Bates D, Boatman L, Canfield TK, Diegel M, Dunn D, Ebersol AK, Frum T, Giste E, Johnson AK, Johnson EM, Kutyavin T, Lajoie B, Lee BK, Lee K, London D, Lotakis D, Neph S, Neri F, Nguyen ED, Qu H, Reynolds AP, Roach V, Safi A, Sanchez ME, Sanyal A, Shafer A, Simon JM, Song L, Vong S, Weaver M, Yan Y, Zhang Z, Lenhard B, Tewari M, Dorschner MO, Hansen RS, Navas PA, et al. 2012. The accessible chromatin landscape of the human genome. Nature 489:75-82. http://dx.doi.org/10.1038/nature11232.
-
(2012)
Nature
, vol.489
, pp. 75-82
-
-
Thurman, R.E.1
Rynes, E.2
Humbert, R.3
Vierstra, J.4
Maurano, M.T.5
Haugen, E.6
Sheffield, N.C.7
Stergachis, A.B.8
Wang, H.9
Vernot, B.10
Garg, K.11
John, S.12
Sandstrom, R.13
Bates, D.14
Boatman, L.15
Canfield, T.K.16
Diegel, M.17
Dunn, D.18
Ebersol, A.K.19
Frum, T.20
Giste, E.21
Johnson, A.K.22
Johnson, E.M.23
Kutyavin, T.24
Lajoie, B.25
Lee, B.K.26
Lee, K.27
London, D.28
Lotakis, D.29
Neph, S.30
Neri, F.31
Nguyen, E.D.32
Qu, H.33
Reynolds, A.P.34
Roach, V.35
Safi, A.36
Sanchez, M.E.37
Sanyal, A.38
Shafer, A.39
Simon, J.M.40
Song, L.41
Vong, S.42
Weaver, M.43
Yan, Y.44
Zhang, Z.45
Lenhard, B.46
Tewari, M.47
Dorschner, M.O.48
Hansen, R.S.49
Navas, P.A.50
more..
-
45
-
-
84355163093
-
DNA-binding factors shape the mouse methylome at distal regulatory regions
-
Stadler MB, Murr R, Burger L, Ivanek R, Lienert F, Scholer A, Wirbelauer C, Oakeley EJ, Gaidatzis D, Tiwari VK, Schubeler D. 2011. DNA-binding factors shape the mouse methylome at distal regulatory regions. Nature 480:490-495. http://dx.doi.org/10.1038/nature10716.
-
(2011)
Nature
, vol.480
, pp. 490-495
-
-
Stadler, M.B.1
Murr, R.2
Burger, L.3
Ivanek, R.4
Lienert, F.5
Scholer, A.6
Wirbelauer, C.7
Oakeley, E.J.8
Gaidatzis, D.9
Tiwari, V.K.10
Schubeler, D.11
-
46
-
-
77749277177
-
The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing
-
Huang Y, Pastor WA, Shen Y, Tahiliani M, Liu DR, Rao A. 2010. The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing. PLoS One 5:e8888. http://dx.doi.org/10.1371/journal.pone.0008888.
-
(2010)
PLoS One
, vol.5
-
-
Huang, Y.1
Pastor, W.A.2
Shen, Y.3
Tahiliani, M.4
Liu, D.R.5
Rao, A.6
-
47
-
-
84861990517
-
Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome
-
Yu M, Hon GC, Szulwach KE, Song CX, Zhang L, Kim A, Li X, Dai Q, Shen Y, Park B, Min JH, Jin P, Ren B, He C. 2012. Base-resolution analysis of 5-hydroxymethylcytosine in the mammalian genome. Cell 149:1368-1380. http://dx.doi.org/10.1016/j.cell.2012.04.027.
-
(2012)
Cell
, vol.149
, pp. 1368-1380
-
-
Yu, M.1
Hon, G.C.2
Szulwach, K.E.3
Song, C.X.4
Zhang, L.5
Kim, A.6
Li, X.7
Dai, Q.8
Shen, Y.9
Park, B.10
Min, J.H.11
Jin, P.12
Ren, B.13
He, C.14
-
48
-
-
49649125042
-
Genome-scale DNA methylation maps of pluripotent and differentiated cells
-
Meissner A, Mikkelsen TS, Gu H, Wernig M, Hanna J, Sivachenko A, Zhang X, Bernstein BE, Nusbaum C, Jaffe DB, Gnirke A, Jaenisch R, Lander ES. 2008. Genome-scale DNA methylation maps of pluripotent and differentiated cells. Nature 454:766-770. http://dx.doi.org/10.1038/nature07107.
-
(2008)
Nature
, vol.454
, pp. 766-770
-
-
Meissner, A.1
Mikkelsen, T.S.2
Gu, H.3
Wernig, M.4
Hanna, J.5
Sivachenko, A.6
Zhang, X.7
Bernstein, B.E.8
Nusbaum, C.9
Jaffe, D.B.10
Gnirke, A.11
Jaenisch, R.12
Lander, E.S.13
-
49
-
-
84904887535
-
TET proteins and 5-methylcytosine oxidation in the immune system
-
Tsagaratou A, Rao A. 2013. TET proteins and 5-methylcytosine oxidation in the immune system. Cold Spring Harb Symp Quant Biol 78:1-10. http://dx.doi.org/10.1101/sqb.2013.78.020248.
-
(2013)
Cold Spring Harb Symp Quant Biol
, vol.78
, pp. 1-10
-
-
Tsagaratou, A.1
Rao, A.2
-
50
-
-
34447528757
-
New cell lines from mouse epiblast share defining features with human embryonic stem cells
-
Tesar PJ, Chenoweth JG, Brook FA, Davies TJ, Evans EP, Mack DL, Gardner RL, McKay RDG. 2007. New cell lines from mouse epiblast share defining features with human embryonic stem cells. Nature 448:196-199. http://dx.doi.org/10.1038/nature05972.
-
(2007)
Nature
, vol.448
, pp. 196-199
-
-
Tesar, P.J.1
Chenoweth, J.G.2
Brook, F.A.3
Davies, T.J.4
Evans, E.P.5
Mack, D.L.6
Gardner, R.L.7
McKay, R.D.G.8
-
51
-
-
84908074395
-
Resetting transcription factor control circuitry toward ground-state pluripotency in human
-
Takashima Y, Guo G, Loos R, Nichols J, Ficz G, Krueger F, Oxley D, Santos F, Clarke J, Mansfield W, Reik W, Bertone P, Smith A. 2014. Resetting transcription factor control circuitry toward ground-state pluripotency in human. Cell 158:1254-1269. http://dx.doi.org/10.1016/j.cell.2014.08.029.
-
(2014)
Cell
, vol.158
, pp. 1254-1269
-
-
Takashima, Y.1
Guo, G.2
Loos, R.3
Nichols, J.4
Ficz, G.5
Krueger, F.6
Oxley, D.7
Santos, F.8
Clarke, J.9
Mansfield, W.10
Reik, W.11
Bertone, P.12
Smith, A.13
-
52
-
-
77956412152
-
Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis
-
Tang F, Barbacioru C, Bao S, Lee C, Nordman E, Wang X, Lao K, Surani MA. 2010. Tracing the derivation of embryonic stem cells from the inner cell mass by single-cell RNA-Seq analysis. Cell Stem Cell 6:468-478. http://dx.doi.org/10.1016/j.stem.2010.03.015.
-
(2010)
Cell Stem Cell
, vol.6
, pp. 468-478
-
-
Tang, F.1
Barbacioru, C.2
Bao, S.3
Lee, C.4
Nordman, E.5
Wang, X.6
Lao, K.7
Surani, M.A.8
-
53
-
-
84859910536
-
A unique regulatory phase of DNA methylation in the early mammalian embryo
-
Smith ZD, Chan MM, Mikkelsen TS, Gu H, Gnirke A, Regev A, Meissner A. 2012. A unique regulatory phase of DNA methylation in the early mammalian embryo. Nature 484:339-344. http://dx.doi.org/10.1038/nature10960.
-
(2012)
Nature
, vol.484
, pp. 339-344
-
-
Smith, Z.D.1
Chan, M.M.2
Mikkelsen, T.S.3
Gu, H.4
Gnirke, A.5
Regev, A.6
Meissner, A.7
-
54
-
-
84903182472
-
TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells
-
Jin C, Lu Y, Jelinek J, Liang S, Estecio MRH, Barton MC, Issa J-PJ. 2014. TET1 is a maintenance DNA demethylase that prevents methylation spreading in differentiated cells. Nucleic Acids Res 42:6956-6971. http://dx.doi.org/10.1093/nar/gku372.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. 6956-6971
-
-
Jin, C.1
Lu, Y.2
Jelinek, J.3
Liang, S.4
Estecio, M.R.H.5
Barton, M.C.6
Issa, J.-P.J.7
-
55
-
-
79956302047
-
TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity
-
Williams K, Christensen J, Pedersen MT, Johansen JV, Cloos PAC, Rappsilber J, Helin K. 2011. TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity. Nature 473:343-348. http://dx.doi.org/10.1038/nature10066.
-
(2011)
Nature
, vol.473
, pp. 343-348
-
-
Williams, K.1
Christensen, J.2
Pedersen, M.T.3
Johansen, J.V.4
Cloos, P.A.C.5
Rappsilber, J.6
Helin, K.7
-
56
-
-
44649117905
-
Integration of external signaling pathways with the core transcriptional network in embryonic stem cells
-
Chen X, Xu H, Yuan P, Fang F, Huss M, Vega VB, Wong E, Orlov YL, Zhang W, Jiang J, Loh YH, Yeo HC, Yeo ZX, Narang V, Govindarajan KR, Leong B, Shahab A, Ruan Y, Bourque G, Sung WK, Clarke ND, Wei CL, Ng HH. 2008. Integration of external signaling pathways with the core transcriptional network in embryonic stem cells. Cell 133:1106-1117. http://dx.doi.org/10.1016/j.cell.2008.04.043.
-
(2008)
Cell
, vol.133
, pp. 1106-1117
-
-
Chen, X.1
Xu, H.2
Yuan, P.3
Fang, F.4
Huss, M.5
Vega, V.B.6
Wong, E.7
Orlov, Y.L.8
Zhang, W.9
Jiang, J.10
Loh, Y.H.11
Yeo, H.C.12
Yeo, Z.X.13
Narang, V.14
Govindarajan, K.R.15
Leong, B.16
Shahab, A.17
Ruan, Y.18
Bourque, G.19
Sung, W.K.20
Clarke, N.D.21
Wei, C.L.22
Ng, H.H.23
more..
-
57
-
-
0029865895
-
Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells
-
Yeom YI, Fuhrmann G, Ovitt CE, Brehm A, Ohbo K, Gross M, Hubner K, Scholer HR. 1996. Germline regulatory element of Oct-4 specific for the totipotent cycle of embryonal cells. Development 122:881-894.
-
(1996)
Development
, vol.122
, pp. 881-894
-
-
Yeom, Y.I.1
Fuhrmann, G.2
Ovitt, C.E.3
Brehm, A.4
Ohbo, K.5
Gross, M.6
Hubner, K.7
Scholer, H.R.8
-
58
-
-
84874368349
-
Activating RNAs associate with Mediator to enhance chromatin architecture and transcription
-
Lai F, Orom UA, Cesaroni M, Beringer M, Taatjes DJ, Blobel GA, Shiekhattar R. 2013. Activating RNAs associate with Mediator to enhance chromatin architecture and transcription. Nature 494:497-501. http://dx.doi.org/10.1038/nature11884.
-
(2013)
Nature
, vol.494
, pp. 497-501
-
-
Lai, F.1
Orom, U.A.2
Cesaroni, M.3
Beringer, M.4
Taatjes, D.J.5
Blobel, G.A.6
Shiekhattar, R.7
-
59
-
-
79956323623
-
Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation
-
Ficz G, Branco MR, Seisenberger S, Santos F, Krueger F, Hore TA, Marques CJ, Andrews S, Reik W. 2011. Dynamic regulation of 5-hydroxymethylcytosine in mouse ES cells and during differentiation. Nature 473:398-402. http://dx.doi.org/10.1038/nature10008.
-
(2011)
Nature
, vol.473
, pp. 398-402
-
-
Ficz, G.1
Branco, M.R.2
Seisenberger, S.3
Santos, F.4
Krueger, F.5
Hore, T.A.6
Marques, C.J.7
Andrews, S.8
Reik, W.9
-
60
-
-
84885536234
-
Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines
-
Foley JW, Sidow A. 2013. Transcription-factor occupancy at HOT regions quantitatively predicts RNA polymerase recruitment in five human cell lines. BMC Genomics 14:720. http://dx.doi.org/10.1186/1471-2164-14-720.
-
(2013)
BMC Genomics
, vol.14
, pp. 720
-
-
Foley, J.W.1
Sidow, A.2
-
61
-
-
84860503075
-
HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature
-
Kvon EZ, Stampfel G, Yanez-Cuna JO, Dickson BJ, Stark A. 2012. HOT regions function as patterned developmental enhancers and have a distinct cis-regulatory signature. Genes Dev 26:908-913. http://dx.doi.org/10.1101/gad.188052.112.
-
(2012)
Genes Dev
, vol.26
, pp. 908-913
-
-
Kvon, E.Z.1
Stampfel, G.2
Yanez-Cuna, J.O.3
Dickson, B.J.4
Stark, A.5
-
62
-
-
84884241288
-
Tet1 is critical for neuronal activity-regulated gene expression and memory extinction
-
Rudenko A, Dawlaty MM, Seo J, Cheng AW, Meng J, Le T, Faull KF, Jaenisch R, Tsai L-H. 2013. Tet1 is critical for neuronal activity-regulated gene expression and memory extinction. Neuron 79:1109-1122. http://dx.doi.org/10.1016/j.neuron.2013.08.003.
-
(2013)
Neuron
, vol.79
, pp. 1109-1122
-
-
Rudenko, A.1
Dawlaty, M.M.2
Seo, J.3
Cheng, A.W.4
Meng, J.5
Le, T.6
Faull, K.F.7
Jaenisch, R.8
Tsai, L.-H.9
-
63
-
-
84881178902
-
Tet1 regulates adult hippocampal neurogenesis and cognition
-
Zhang RR, Cui QY, Murai K, Lim YC, Smith ZD, Jin S, Ye P, Rosa L, Lee YK, Wu HP, Liu W, Xu ZM, Yang L, Ding YQ, Tang F, Meissner A, Ding C, Shi Y, Xu GL. 2013. Tet1 regulates adult hippocampal neurogenesis and cognition. Cell Stem Cell 13:237-245. http://dx.doi.org/10.1016/j.stem.2013.05.006.
-
(2013)
Cell Stem Cell
, vol.13
, pp. 237-245
-
-
Zhang, R.R.1
Cui, Q.Y.2
Murai, K.3
Lim, Y.C.4
Smith, Z.D.5
Jin, S.6
Ye, P.7
Rosa, L.8
Lee, Y.K.9
Wu, H.P.10
Liu, W.11
Xu, Z.M.12
Yang, L.13
Ding, Y.Q.14
Tang, F.15
Meissner, A.16
Ding, C.17
Shi, Y.18
Xu, G.L.19
-
64
-
-
84875923762
-
Replacement of Oct4 by Tet1 during iPSC induction reveals an important role ofDNAmethylation and hydroxymethylation in reprogramming
-
Gao Y, Chen J, Li K, Wu T, Huang B, Liu W, Kou X, Zhang Y, Huang H, Jiang Y, Yao C, Liu X, Lu Z, Xu Z, Kang L, Chen J, Wang H, Cai T, Gao S. 2013. Replacement of Oct4 by Tet1 during iPSC induction reveals an important role ofDNAmethylation and hydroxymethylation in reprogramming. Cell Stem Cell 12:453-469. http://dx.doi.org/10.1016/j.stem.2013.02.005.
-
(2013)
Cell Stem Cell
, vol.12
, pp. 453-469
-
-
Gao, Y.1
Chen, J.2
Li, K.3
Wu, T.4
Huang, B.5
Liu, W.6
Kou, X.7
Zhang, Y.8
Huang, H.9
Jiang, Y.10
Yao, C.11
Liu, X.12
Lu, Z.13
Xu, Z.14
Kang, L.15
Chen, J.16
Wang, H.17
Cai, T.18
Gao, S.19
-
65
-
-
84867073340
-
Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage
-
Wamstad JA, Alexander JM, Truty RM, Shrikumar A, Li F, Eilertson KE, Ding H, Wylie JN, Pico AR, Capra JA, Erwin G, Kattman SJ, Keller GM, Srivastava D, Levine SS, Pollard KS, Holloway AK, Boyer LA, Bruneau BG. 2012. Dynamic and coordinated epigenetic regulation of developmental transitions in the cardiac lineage. Cell 151:206-220. http://dx.doi.org/10.1016/j.cell.2012.07.035.
-
(2012)
Cell
, vol.151
, pp. 206-220
-
-
Wamstad, J.A.1
Alexander, J.M.2
Truty, R.M.3
Shrikumar, A.4
Li, F.5
Eilertson, K.E.6
Ding, H.7
Wylie, J.N.8
Pico, A.R.9
Capra, J.A.10
Erwin, G.11
Kattman, S.J.12
Keller, G.M.13
Srivastava, D.14
Levine, S.S.15
Pollard, K.S.16
Holloway, A.K.17
Boyer, L.A.18
Bruneau, B.G.19
-
66
-
-
53849146020
-
Model-based analysis of ChIP-Seq (MACS)
-
Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. 2008. Model-based analysis of ChIP-Seq (MACS). Genome Biol 9:R137. http://dx.doi.org/10.1186/gb-2008-9-9-r137.
-
(2008)
Genome Biol
, vol.9
-
-
Zhang, Y.1
Liu, T.2
Meyer, C.A.3
Eeckhoute, J.4
Johnson, D.S.5
Bernstein, B.E.6
Nusbaum, C.7
Myers, R.M.8
Brown, M.9
Li, W.10
Liu, X.S.11
-
67
-
-
48449097251
-
QUMA: quantification tool for methylation analysis
-
Kumaki Y, Masaaki Oda M, Okano M. 2008. QUMA: quantification tool for methylation analysis. Nucleic Acids Res 36:W170-W175. http://dx.doi.org/10.1093/nar/gkn294.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. W170-W175
-
-
Kumaki, Y.1
Masaaki Oda, M.2
Okano, M.3
|