메뉴 건너뛰기




Volumn 89, Issue 5, 2015, Pages 2764-2776

RNase L targets distinct sites in influenza a virus RNAs

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 1; PROTEIN PA; PROTEIN PB1; PROTEIN PB2; RIBONUCLEASE L; RIBOSOME RNA; SHORT HAIRPIN RNA; UNCLASSIFIED DRUG; VIRUS PROTEIN; VIRUS RNA; 2-5A-DEPENDENT RIBONUCLEASE; RIBONUCLEASE;

EID: 84923016539     PISSN: 0022538X     EISSN: 10985514     Source Type: Journal    
DOI: 10.1128/JVI.02953-14     Document Type: Article
Times cited : (41)

References (54)
  • 2
    • 79960384534 scopus 로고    scopus 로고
    • Influenza A viruses: new research developments
    • Medina RA, García-Sastre A. 2011. Influenza A viruses: new research developments. Nat Rev Microbiol 9:590-603. http://dx.doi.org/10.1038/nrmicro2613.
    • (2011) Nat Rev Microbiol , vol.9 , pp. 590-603
    • Medina, R.A.1    García-Sastre, A.2
  • 5
    • 84899711659 scopus 로고    scopus 로고
    • North American triple reassortant and Eurasian H1N1 swine influenza viruses do not readily reassort to generate a 2009 pandemic H1N1-like virus
    • Ma W, Liu Q, Qiao C, Del Real G, García-Sastre A, Webby RJ, Richt JA. 2014. North American triple reassortant and Eurasian H1N1 swine influenza viruses do not readily reassort to generate a 2009 pandemic H1N1-like virus. mBio 5:e00919-13. http://dx.doi.org/10.1128/mBio.00919-13.
    • (2014) mBio , vol.5 , pp. e00913-e00919
    • Ma, W.1    Liu, Q.2    Qiao, C.3    Del Real, G.4    García-Sastre, A.5    Webby, R.J.6    Richt, J.A.7
  • 6
    • 22944457912 scopus 로고    scopus 로고
    • Influenza: lessons from past pandemics, warnings from current incidents
    • Horimoto T, Kawaoka Y. 2005. Influenza: lessons from past pandemics, warnings from current incidents. Nat Rev Microbiol 3:591-600. http://dx.doi.org/10.1038/nrmicro1208.
    • (2005) Nat Rev Microbiol , vol.3 , pp. 591-600
    • Horimoto, T.1    Kawaoka, Y.2
  • 8
    • 0036210827 scopus 로고    scopus 로고
    • The influenza virus nucleoprotein: a multifunctional RNA-binding protein pivotal to virus replication
    • Portela A, Digard P. 2002. The influenza virus nucleoprotein: a multifunctional RNA-binding protein pivotal to virus replication. J Gen Virol 83:723-734. http://dx.doi.org/10.1099/vir.0.18133-0.
    • (2002) J Gen Virol , vol.83 , pp. 723-734
    • Portela, A.1    Digard, P.2
  • 9
    • 84882328506 scopus 로고    scopus 로고
    • The influenza virus NS1 protein as a therapeutic target
    • Engel DA. 2013. The influenza virus NS1 protein as a therapeutic target. Antiviral Res 99:409-416. http://dx.doi.org/10.1016/j.antiviral.2013.06.005.
    • (2013) Antiviral Res , vol.99 , pp. 409-416
    • Engel, D.A.1
  • 11
    • 33646478272 scopus 로고    scopus 로고
    • The primary function of RNA binding by the influenza A virus NS1 protein in infected cells: inhibiting the 2'-5' oligo(A) synthetase/RNase L pathway
    • Min JY, Krug RM. 2006. The primary function of RNA binding by the influenza A virus NS1 protein in infected cells: inhibiting the 2'-5' oligo( A) synthetase/RNase L pathway. Proc Natl Acad Sci USA 103:7100-7105. http://dx.doi.org/10.1073/pnas.0602184103.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 7100-7105
    • Min, J.Y.1    Krug, R.M.2
  • 12
    • 78651227626 scopus 로고    scopus 로고
    • Novel inhibitor of influenza non-structural protein 1 blocks multi-cycle replication in an RNase L-dependent manner
    • Walkiewicz MP, Basu D, Jablonski JJ, Geysen HM, Engel DA. 2011. Novel inhibitor of influenza non-structural protein 1 blocks multi-cycle replication in an RNase L-dependent manner. J Gen Virol 92:60-70. http://dx.doi.org/10.1099/vir.0.025015-0.
    • (2011) J Gen Virol , vol.92 , pp. 60-70
    • Walkiewicz, M.P.1    Basu, D.2    Jablonski, J.J.3    Geysen, H.M.4    Engel, D.A.5
  • 13
    • 84883319412 scopus 로고    scopus 로고
    • Role of ribonuclease L in viral pathogen-associated molecular pattern/influenza virus and cigarette smoke-induced inflammation and remodeling
    • Zhou Y, Kang MJ, Jha BK, Silverman RH, Lee CG, Elias JA. 2013. Role of ribonuclease L in viral pathogen-associated molecular pattern/influenza virus and cigarette smoke-induced inflammation and remodeling. J Immunol 191: 2637-2646. http://dx.doi.org/10.4049/jimmunol.1300082.
    • (2013) J Immunol , vol.191 , pp. 2637-2646
    • Zhou, Y.1    Kang, M.J.2    Jha, B.K.3    Silverman, R.H.4    Lee, C.G.5    Elias, J.A.6
  • 14
    • 84899862908 scopus 로고    scopus 로고
    • Ribonuclease L and metal ion-independent endoribonuclease cleavage sites in host and viral RNAs
    • Cooper DA, Jha BK, Silverman RH, Hesselberth JR, Barton DJ. 2014. Ribonuclease L and metal ion-independent endoribonuclease cleavage sites in host and viral RNAs. Nucleic Acids Res 42:5202-5216. http://dx.doi.org/10.1093/nar/gku118.
    • (2014) Nucleic Acids Res , vol.42 , pp. 5202-5216
    • Cooper, D.A.1    Jha, B.K.2    Silverman, R.H.3    Hesselberth, J.R.4    Barton, D.J.5
  • 15
    • 0019423024 scopus 로고
    • Interferon action-sequence specificity of the ppp(A2' p)nA-dependent ribonuclease
    • Wreschner DH, McCauley JW, Skehel JJ, Kerr IM. 1981. Interferon action-sequence specificity of the ppp(A2' p)nA-dependent ribonuclease. Nature 289:414-417. http://dx.doi.org/10.1038/289414a0.
    • (1981) Nature , vol.289 , pp. 414-417
    • Wreschner, D.H.1    McCauley, J.W.2    Skehel, J.J.3    Kerr, I.M.4
  • 16
    • 84896045262 scopus 로고    scopus 로고
    • Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response
    • Han Y, Donovan J, Rath S, Whitney G, Chitrakar A, Korennykh A. 2014. Structure of human RNase L reveals the basis for regulated RNA decay in the IFN response. Science 343:1244-1248. http://dx.doi.org/10.1126/science.1249845.
    • (2014) Science , vol.343 , pp. 1244-1248
    • Han, Y.1    Donovan, J.2    Rath, S.3    Whitney, G.4    Chitrakar, A.5    Korennykh, A.6
  • 23
    • 0028909072 scopus 로고
    • 2-5A-dependent RNase molecules dimerize during activation by 2-5A
    • Dong B, Silverman RH. 1995. 2-5A-dependent RNase molecules dimerize during activation by 2-5A. J Biol Chem 270:4133-4137. http://dx.doi.org/10.1074/jbc.270.8.4133.
    • (1995) J Biol Chem , vol.270 , pp. 4133-4137
    • Dong, B.1    Silverman, R.H.2
  • 25
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B, Trapnell C, Pop M, Salzberg SL. 2009. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25. http://dx.doi.org/10.1186/gb-2009-10-3-r25.
    • (2009) Genome Biol , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 26
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26:841-842. http://dx.doi.org/10.1093/bioinformatics/btq033.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 28
    • 84907095419 scopus 로고    scopus 로고
    • R: a language and environment for statistical computing
    • Vienna, Austria
    • R Development Core Team. 2012. R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2012) R Foundation for Statistical Computing
  • 29
    • 84919730261 scopus 로고    scopus 로고
    • Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses
    • Firth AE. 2014. Mapping overlapping functional elements embedded within the protein-coding regions of RNA viruses. Nucleic Acids Res 42: 12425-12439. http://dx.doi.org/10.1093/nar/gku981.
    • (2014) Nucleic Acids Res , vol.42 , pp. 12425-12439
    • Firth, A.E.1
  • 31
    • 0020535757 scopus 로고
    • rRNA cleavage as an index of ppp(A2'p)nA activity in interferon-treated encephalomyocarditis virus-infected cells
    • Silverman RH, Skehel JJ, James TC, Wreschner DH, Kerr IM. 1983. rRNA cleavage as an index of ppp(A2'p)nA activity in interferon-treated encephalomyocarditis virus-infected cells. J Virol 46:1051-1055.
    • (1983) J Virol , vol.46 , pp. 1051-1055
    • Silverman, R.H.1    Skehel, J.J.2    James, T.C.3    Wreschner, D.H.4    Kerr, I.M.5
  • 32
    • 0019389403 scopus 로고
    • Ribosomal RNA cleavage, nuclease activation and 2-5A(ppp(A2'p)nA) in interferontreated cells
    • Wreschner DH, James TC, Silverman RH, Kerr IM. 1981. Ribosomal RNA cleavage, nuclease activation and 2-5A(ppp(A2'p)nA) in interferontreated cells. Nucleic Acids Res 9:1571-1581. http://dx.doi.org/10.1093/nar/9.7.1571.
    • (1981) Nucleic Acids Res , vol.9 , pp. 1571-1581
    • Wreschner, D.H.1    James, T.C.2    Silverman, R.H.3    Kerr, I.M.4
  • 33
    • 77956030336 scopus 로고    scopus 로고
    • Mutational and metal binding analysis of the endonuclease domain of the influenza virus polymerase PA subunit
    • Crépin T, Dias A, Palencia A, Swale C, Cusack S, Ruigrok RWH. 2010. Mutational and metal binding analysis of the endonuclease domain of the influenza virus polymerase PA subunit. J Virol 84:9096-9104. http://dx.doi.org/10.1128/JVI.00995-10.
    • (2010) J Virol , vol.84 , pp. 9096-9104
    • Crépin, T.1    Dias, A.2    Palencia, A.3    Swale, C.4    Cusack, S.5    Ruigrok, R.W.H.6
  • 35
    • 0032580998 scopus 로고    scopus 로고
    • A single amino acid substitution changes ribonuclease 4 from a uridine-specific to a cytidine-specific enzyme
    • Hofsteenge J, Moldow C, Vicentini AM, Zelenko O, Jarai-Kote Z, Neumann U. 1998. A single amino acid substitution changes ribonuclease 4 from a uridine-specific to a cytidine-specific enzyme. Biochemistry 37: 9250-9257. http://dx.doi.org/10.1021/bi9803832.
    • (1998) Biochemistry , vol.37 , pp. 9250-9257
    • Hofsteenge, J.1    Moldow, C.2    Vicentini, A.M.3    Zelenko, O.4    Jarai-Kote, Z.5    Neumann, U.6
  • 37
    • 13944277097 scopus 로고    scopus 로고
    • Angiogenin is translocated to the nucleus of HeLa cells and is involved in ribosomal RNA transcription and cell proliferation
    • Tsuji T, Sun Y, Kishimoto K, Olson KA, Liu S, Hirukawa S, Hu GF. 2005. Angiogenin is translocated to the nucleus of HeLa cells and is involved in ribosomal RNA transcription and cell proliferation. Cancer Res 65:1352-1360. http://dx.doi.org/10.1158/0008-5472.CAN-04-2058.
    • (2005) Cancer Res , vol.65 , pp. 1352-1360
    • Tsuji, T.1    Sun, Y.2    Kishimoto, K.3    Olson, K.A.4    Liu, S.5    Hirukawa, S.6    Hu, G.F.7
  • 38
    • 79956225207 scopus 로고    scopus 로고
    • Identification of potential conserved RNA secondary structure throughout influenza A coding regions
    • Moss WN, Priore SF, Turner DH. 2011. Identification of potential conserved RNA secondary structure throughout influenza A coding regions. RNA 17:991-1011. http://dx.doi.org/10.1261/rna.2619511.
    • (2011) RNA , vol.17 , pp. 991-1011
    • Moss, W.N.1    Priore, S.F.2    Turner, D.H.3
  • 39
    • 36348987303 scopus 로고    scopus 로고
    • Viral encounters with 2',5'-oligoadenylate synthetase and RNase L during the interferon antiviral response
    • Silverman RH. 2007. Viral encounters with 2',5'-oligoadenylate synthetase and RNase L during the interferon antiviral response. J Virol 81: 12720-12729. http://dx.doi.org/10.1128/JVI.01471-07.
    • (2007) J Virol , vol.81 , pp. 12720-12729
    • Silverman, R.H.1
  • 40
    • 34249828988 scopus 로고    scopus 로고
    • A phylogenetically conserved RNA structure in the poliovirus open reading frame inhibits the antiviral endoribonuclease RNase L
    • Han JQ, Townsend HL, Jha BK, Paranjape JM, Silverman RH, Barton DJ. 2007. A phylogenetically conserved RNA structure in the poliovirus open reading frame inhibits the antiviral endoribonuclease RNase L. J Virol 81:5561-5572. http://dx.doi.org/10.1128/JVI.01857-06.
    • (2007) J Virol , vol.81 , pp. 5561-5572
    • Han, J.Q.1    Townsend, H.L.2    Jha, B.K.3    Paranjape, J.M.4    Silverman, R.H.5    Barton, D.J.6
  • 41
    • 84879534664 scopus 로고    scopus 로고
    • Evasion of antiviral innate immunity by Theiler's virus L* protein through direct inhibition of RNase L
    • Sorgeloos F, Jha BK, Silverman RH, Michiels T. 2013. Evasion of antiviral innate immunity by Theiler's virus L* protein through direct inhibition of RNase L. PLoS Pathog 9:e1003474. http://dx.doi.org/10.1371/journal.ppat.1003474.
    • (2013) PLoS Pathog , vol.9
    • Sorgeloos, F.1    Jha, B.K.2    Silverman, R.H.3    Michiels, T.4
  • 42
    • 84862297105 scopus 로고    scopus 로고
    • Antagonism of the interferon-induced OAS-RNase L pathway by murine coronavirus ns2 protein is required for virus replication and liver pathology
    • Zhao L, Jha BK, Wu A, Elliott R, Ziebuhr J, Gorbalenya AE, Silverman RH, Weiss SR. 2012. Antagonism of the interferon-induced OAS-RNase L pathway by murine coronavirus ns2 protein is required for virus replication and liver pathology. Cell Host Microbe 11:607-616. http://dx.doi.org/10.1016/j.chom.2012.04.011.
    • (2012) Cell Host Microbe , vol.11 , pp. 607-616
    • Zhao, L.1    Jha, B.K.2    Wu, A.3    Elliott, R.4    Ziebuhr, J.5    Gorbalenya, A.E.6    Silverman, R.H.7    Weiss, S.R.8
  • 44
    • 84861548193 scopus 로고    scopus 로고
    • Summarizing and correcting the GC content bias in high-throughput sequencing
    • Benjamini Y, Speed TP. 2012. Summarizing and correcting the GC content bias in high-throughput sequencing. Nucleic Acids Res 40:e72. http://dx.doi.org/10.1093/nar/gks001.
    • (2012) Nucleic Acids Res , vol.40
    • Benjamini, Y.1    Speed, T.P.2
  • 45
    • 77149132138 scopus 로고    scopus 로고
    • Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates
    • Schutz K, Hesselberth JR, Fields S. 2010. Capture and sequence analysis of RNAs with terminal 2',3'-cyclic phosphates. RNA 16:621-631. http://dx.doi.org/10.1261/rna.1934910.
    • (2010) RNA , vol.16 , pp. 621-631
    • Schutz, K.1    Hesselberth, J.R.2    Fields, S.3
  • 46
    • 33646826348 scopus 로고    scopus 로고
    • Parallels among positive-strand RNA viruses, reversetranscribing viruses and double-strandedRNAviruses
    • Ahlquist P. 2006. Parallels among positive-strand RNA viruses, reversetranscribing viruses and double-strandedRNAviruses. Nat Rev Microbiol 4:371-382. http://dx.doi.org/10.1038/nrmicro1389.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 371-382
    • Ahlquist, P.1
  • 47
    • 44149099332 scopus 로고    scopus 로고
    • A viral RNA competitively inhibits the antiviral endoribonuclease domain of RNase L
    • Townsend HL, Jha BK, Han JQ, Maluf NK, Silverman RH, Barton DJ. 2008. A viral RNA competitively inhibits the antiviral endoribonuclease domain of RNase L. RNA 14:1026-1036. http://dx.doi.org/10.1261/rna.958908.
    • (2008) RNA , vol.14 , pp. 1026-1036
    • Townsend, H.L.1    Jha, B.K.2    Han, J.Q.3    Maluf, N.K.4    Silverman, R.H.5    Barton, D.J.6
  • 48
    • 57349158422 scopus 로고    scopus 로고
    • A putative loop E motif and an H-H kissing loop interaction are conserved and functional features in a group C enterovirus RNA that inhibits ribonuclease L
    • Townsend HL, Jha BK, Silverman RH, Barton DJ. 2008. A putative loop E motif and an H-H kissing loop interaction are conserved and functional features in a group C enterovirus RNA that inhibits ribonuclease L. RNA Biol 5:263-272. http://dx.doi.org/10.4161/rna.7165.
    • (2008) RNA Biol , vol.5 , pp. 263-272
    • Townsend, H.L.1    Jha, B.K.2    Silverman, R.H.3    Barton, D.J.4
  • 49
    • 84894501374 scopus 로고    scopus 로고
    • Evidence for a crucial role of a host non-coding RNA in influenza A virus replication
    • Winterling C, Koch M, Koeppel M, García-Alcalde F, Karlas A, Meyer TF. 2014. Evidence for a crucial role of a host non-coding RNA in influenza A virus replication. RNA Biol 11:66-75. http://dx.doi.org/10.4161/rna.27504.
    • (2014) RNA Biol , vol.11 , pp. 66-75
    • Winterling, C.1    Koch, M.2    Koeppel, M.3    García-Alcalde, F.4    Karlas, A.5    Meyer, T.F.6
  • 50
    • 34547960175 scopus 로고    scopus 로고
    • Small self-RNA generated by RNase L amplifies antiviral innate immunity
    • Malathi K, Dong B, Gale M, Jr, Silverman RH. 2007. Small self-RNA generated by RNase L amplifies antiviral innate immunity. Nature 448: 816-819. http://dx.doi.org/10.1038/nature06042.
    • (2007) Nature , vol.448 , pp. 816-819
    • Malathi, K.1    Dong, B.2    Gale, M.3    Silverman, R.H.4
  • 51
    • 84874515523 scopus 로고    scopus 로고
    • Causes and implications of codon usage bias in RNA viruses
    • Belalov IS, Lukashev AN. 2013. Causes and implications of codon usage bias in RNA viruses. PLoS One 8:e56642. http://dx.doi.org/10.1371/journal.pone.0056642.
    • (2013) PLoS One , vol.8
    • Belalov, I.S.1    Lukashev, A.N.2
  • 52
    • 84906337251 scopus 로고    scopus 로고
    • Influenza A virus attenuation by codon deoptimization of the NS gene for vaccine development
    • Nogales A, Baker SF, Ortiz-Riano E, Dewhurst S, Topham DJ, Martinez-Sobrido L. 2014. Influenza A virus attenuation by codon deoptimization of the NS gene for vaccine development. J Virol 88:10525-10540. http://dx.doi.org/10.1128/JVI.01565-14.
    • (2014) J Virol , vol.88 , pp. 10525-10540
    • Nogales, A.1    Baker, S.F.2    Ortiz-Riano, E.3    Dewhurst, S.4    Topham, D.J.5    Martinez-Sobrido, L.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.